mRNA_E-fasciculatus_F_contig102.190.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig102.190.1
Unique NamemRNA_E-fasciculatus_F_contig102.190.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig102.190.1 vs. uniprot
Match: D7FKT0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKT0_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 4.820e-12
Identity = 49/87 (56.32%), Postives = 58/87 (66.67%), Query Frame = 1 
Query:    1 DSRSASPLLHHRIRIAMARAMPRTRAMKTTSHTANFDL------YREWAERQQLESELESAYKSKMAVYEVAFV---LGMALGVAML 234
            DSR AS LLHHRI IA  RA+PRT AM      A + L       R+ AE Q+LES+LESAYKSKMAV+ + F+   LGM LG+AML
Sbjct:    3 DSRPASRLLHHRISIA--RAVPRTNAMNLL---AFYQLPESRWATRKLAEPQKLESDLESAYKSKMAVWGIIFMSSALGMVLGMAML 84
[Close]
BLAST of mRNA_E-fasciculatus_F_contig102.190.1 vs. uniprot
Match: D7FHM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHM7_ECTSI)

HSP 1 Score: 47.8 bits (112), Expect = 4.400e-5
Identity = 31/49 (63.27%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:   97 TANFDLYREWAERQQLESELESAYKSKMAVYEVAFV---LGMALGVAML 234
            TA+    R+ AERQ+LESELESAYKS MAV+ V F+   LGMAL +AML
Sbjct:   33 TASRRTARQLAERQKLESELESAYKSTMAVWGVIFMASDLGMALVMAML 81
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig102.190.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FKT0_ECTSI4.820e-1256.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHM7_ECTSI4.400e-563.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig102contigE-fasciculatus_F_contig102:22609..23647 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_002410.1
Exons2
Model size292
Cds size240
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig102.190.1prot_E-fasciculatus_F_contig102.190.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig102 22661..23647 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927520.3246088-UTR-E-fasciculatus_F_contig102:22608..226601622927520.3246088-UTR-E-fasciculatus_F_contig102:22608..22660Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig102 22609..22660 -
1695995577.1326854-UTR-E-fasciculatus_F_contig102:22608..226601695995577.1326854-UTR-E-fasciculatus_F_contig102:22608..22660Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig102 22609..22660 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927520.3372524-CDS-E-fasciculatus_F_contig102:22660..227871622927520.3372524-CDS-E-fasciculatus_F_contig102:22660..22787Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig102 22661..22787 -
1695995577.1408246-CDS-E-fasciculatus_F_contig102:22660..227871695995577.1408246-CDS-E-fasciculatus_F_contig102:22660..22787Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig102 22661..22787 -
1622927520.3482575-CDS-E-fasciculatus_F_contig102:23534..236471622927520.3482575-CDS-E-fasciculatus_F_contig102:23534..23647Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig102 23535..23647 -
1695995577.1488678-CDS-E-fasciculatus_F_contig102:23534..236471695995577.1488678-CDS-E-fasciculatus_F_contig102:23534..23647Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig102 23535..23647 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig102.190.1

>prot_E-fasciculatus_F_contig102.190.1 ID=prot_E-fasciculatus_F_contig102.190.1|Name=mRNA_E-fasciculatus_F_contig102.190.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=80bp
DSRSASPLLHHRIRIAMARAMPRTRAMKTTSHTANFDLYREWAERQQLES
ELESAYKSKMAVYEVAFVLGMALGVAMLE*
back to top

mRNA from alignment at E-fasciculatus_F_contig102:22609..23647-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig102.190.1 ID=mRNA_E-fasciculatus_F_contig102.190.1|Name=mRNA_E-fasciculatus_F_contig102.190.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1039bp|location=Sequence derived from alignment at E-fasciculatus_F_contig102:22609..23647- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GACTCGCGGTCCGCTTCGCCCTTACTCCACCACCGCATCAGAATCGCCAT
GGCCAGGGCCATGCCCAGGACAAGGGCCATGAAGACGACGTCCCATACGG
CCAACTTCGACTTGTAGGCCGACTCCAACTCTGATTCAAGCTTCTTGCGT
TCCACCAATTCCCGGCATCCCGGGTGTTGACAAAACATTGCTAACATCCG
CGGAATGCCGGGGGTTGCAAAACGCCACAAGCTGGAATCAGAGTTGGCCG
TGTGGGGCGTCATCTTTGTGGCCTTCGTCCTGGGCATGTCCCTGGCTATG
GCAATGCTGGAGAAAGCCCCAAGCGGACCGTGAGTCCGCCCTGGTCCACG
CTCTCGAGGAACCTCGAGAGGGCGGACTCACCGTCCGCTTGGCGCTTACT
CCATCATCGCCACGGCCAGGGCAATGCCCAGGACGTAGGCCATGAAGATG
ACGCCCCAAACGGCCAACTCGACTTGTAAGCGGACGCCAACTCTGAGTCT
AGCTTCTTGTGTTCTGCCAACTCCCGCCATCCCGGATGTTCACAAAACAT
TGCTAACCTCCGCGGGATGCCTCGAGTTGGCAGAACGCCACAAGCTGGGA
TGAGAGATGGCCTTGTGGGGCGCCATCTTCATGGCCCTCGTTCTGGGCAT
GGCCCTGGCTACAGCGATGCTCGAGTAAGCGCCAAGCAGACGCTGAGTCC
GCCCTGGCTTAACCTCTCGAGGTATCGAGACCACGAGCAGCGGTGGCCGC
GGAAGCGACCATGCTTGACTTGTAGGCGGACTCTAACTCTGATTCCGGCT
TCTGCCTCTCTGCCAAATCTCGGCATTTCGGATGTTCACAAAACTTTGCT
AACATCCGAGATACCGGGAGTGGGCAGAACGCCAGCAGCTGGAATCAGAG
TTAGAGTCGGCCTACAAGTCGAAGATGGCCGTATATGAGGTGGCCTTCGT
CCTGGGCATGGCCCTGGGCGTGGCGATGCTGGAGTAAGCGCCAAGCGGAC
CGCGAGTCCGCCCTGGTTCACGCTGTCGAGGGATCGAGA
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig102:22609..23647-

>mRNA_E-fasciculatus_F_contig102.190.1 ID=mRNA_E-fasciculatus_F_contig102.190.1|Name=mRNA_E-fasciculatus_F_contig102.190.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=480bp|location=Sequence derived from alignment at E-fasciculatus_F_contig102:22609..23647- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GACTCGCGGTCCGCTTCGCCCTTACTCCACCACCGCATCAGAATCGCCAT
GGCCAGGGCCATGCCCAGGACAAGGGCCATGAAGACGACGTCCCATACGG
CCAACTTCGACTTGACTCGCGGTCCGCTTCGCCCTTACTCCACCACCGCA
TCAGAATCGCCATGGCCAGGGCCATGCCCAGGACAAGGGCCATGAAGACG
ACGTCCCATACGGCCAACTTCGACTTATACCGGGAGTGGGCAGAACGCCA
GCAGCTGGAATCAGAGTTAGAGTCGGCCTACAAGTCGAAGATGGCCGTAT
ATGAGGTGGCCTTCGTCCTGGGCATGGCCCTGGGCGTGGCGATGCTGGAG
TAAATACCGGGAGTGGGCAGAACGCCAGCAGCTGGAATCAGAGTTAGAGT
CGGCCTACAAGTCGAAGATGGCCGTATATGAGGTGGCCTTCGTCCTGGGC
ATGGCCCTGGGCGTGGCGATGCTGGAGTAA
back to top