mRNA_E-fasciculatus_F_contig10032.47.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig10032.47.1 vs. uniprot
Match: A0A6H5L316_9PHAE (SHSP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L316_9PHAE) HSP 1 Score: 162 bits (410), Expect = 1.100e-45 Identity = 85/93 (91.40%), Postives = 90/93 (96.77%), Query Frame = 1 Query: 1 PAVMQETDDLYTLAFDLPAGVDHDGLEVSISGRLLTVKASITREQEADPFTSRGGWVTRSSRVDSVSRSFVLPEGLVESSATASLAEGKAEVR 279
PAV+ ET+DLYTLAFDLPAGVDHDGLEVS+S RLLTVKASITREQEADPF +RGGWVTRSSRVDSVSRSFVLPEGLVESSATASL+EGKAEVR
Sbjct: 122 PAVILETNDLYTLAFDLPAGVDHDGLEVSVSDRLLTVKASITREQEADPFITRGGWVTRSSRVDSVSRSFVLPEGLVESSATASLSEGKAEVR 214
BLAST of mRNA_E-fasciculatus_F_contig10032.47.1 vs. uniprot
Match: D8LP10_ECTSI (SHSP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP10_ECTSI) HSP 1 Score: 160 bits (405), Expect = 6.170e-45 Identity = 83/93 (89.25%), Postives = 88/93 (94.62%), Query Frame = 1 Query: 1 PAVMQETDDLYTLAFDLPAGVDHDGLEVSISGRLLTVKASITREQEADPFTSRGGWVTRSSRVDSVSRSFVLPEGLVESSATASLAEGKAEVR 279
P ++ ETDDLY LAFDLPAGVDHDGL+VS+S RLLTVKASITREQEADPFT+RGGWVTRSSRVDSVSRSFVLPEGLVESSATASLAE KAEVR
Sbjct: 118 PVIILETDDLYALAFDLPAGVDHDGLDVSVSDRLLTVKASITREQEADPFTTRGGWVTRSSRVDSVSRSFVLPEGLVESSATASLAESKAEVR 210
BLAST of mRNA_E-fasciculatus_F_contig10032.47.1 vs. uniprot
Match: D7FTP7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTP7_ECTSI) HSP 1 Score: 61.2 bits (147), Expect = 7.480e-9 Identity = 38/83 (45.78%), Postives = 55/83 (66.27%), Query Frame = 1 Query: 10 MQETDDLYTLAFDLPAGVDHDGLEVSISGRLLTVKASITREQEADPFT------SRG--GWV-TR-SSRVDSVSRSFVLPEGL 228
++ETD Y L F+LP+G+ GLEVS+SGRLLTV+A TRE+ D + S G GWV TR +++ ++ +RSF LP+ +
Sbjct: 111 VRETDAGYALTFNLPSGISDTGLEVSVSGRLLTVEARTTREENHDVISKSADKGSEGSKGWVMTRCTTKTNAAARSFTLPDSV 193
BLAST of mRNA_E-fasciculatus_F_contig10032.47.1 vs. uniprot
Match: E4NTY4_HALBP (Heat shock protein Hsp20 n=2 Tax=Halogeometricum borinquense TaxID=60847 RepID=E4NTY4_HALBP) HSP 1 Score: 53.9 bits (128), Expect = 5.660e-7 Identity = 35/85 (41.18%), Postives = 50/85 (58.82%), Query Frame = 1 Query: 10 MQETDDLYTLAFDLPAGVDHDGLEVSISGRLLTVKASITREQEADPFTSRGGWVTRSSRVDSVSRSFVLPEGLVESSATASLAEG 264
+ ETDD +T+ DLP G + D +E+S SGR LT++A EQ A+ S +V R R +V RS LP+ +VE A+A+ G
Sbjct: 36 VSETDDEFTVVADLP-GYEKDDIEISASGRELTIRA----EQTAETEESGDRYVRRERRQSNVRRSLTLPQEVVEEEASATYKNG 115 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10032.47.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10032.47.1 >prot_E-fasciculatus_F_contig10032.47.1 ID=prot_E-fasciculatus_F_contig10032.47.1|Name=mRNA_E-fasciculatus_F_contig10032.47.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=94bp MQETDDLYTLAFDLPAGVDHDGLEVSISGRLLTVKASITREQEADPFTSRback to top mRNA from alignment at E-fasciculatus_F_contig10032:4438..4728+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig10032.47.1 ID=mRNA_E-fasciculatus_F_contig10032.47.1|Name=mRNA_E-fasciculatus_F_contig10032.47.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=291bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10032:4438..4728+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10032:4438..4728+ >mRNA_E-fasciculatus_F_contig10032.47.1 ID=mRNA_E-fasciculatus_F_contig10032.47.1|Name=mRNA_E-fasciculatus_F_contig10032.47.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=564bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10032:4438..4728+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |