Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10009.3.1 vs. uniprot
Match:
D8LB97_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB97_ECTSI)
HSP 1 Score: 80.9 bits (198), Expect = 6.670e-17
Identity = 35/39 (89.74%), Postives = 38/39 (97.44%), Query Frame = 1
Query: 4 AGGQQTDHRVIVTGLPPSASWQDLKDHMRKAGDPTYTDV 120
AG QQT++RVIVTGLPPSASWQDLKDHMRKAG+PTYTDV
Sbjct: 110 AGFQQTEYRVIVTGLPPSASWQDLKDHMRKAGEPTYTDV 148
BLAST of mRNA_D-mesarthrocarpus_Contig10009.3.1 vs. uniprot
Match:
A0A835YQ88_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ88_9STRA)
HSP 1 Score: 77.8 bits (190), Expect = 5.920e-16
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 1
Query: 1 MAGGQQTDHRVIVTGLPPSASWQDLKDHMRKAGDPTYTDV 120
M GG+QT+ RVIVTGLPPSASWQDLKDHMRKAGD YTDV
Sbjct: 95 MGGGRQTEWRVIVTGLPPSASWQDLKDHMRKAGDVVYTDV 134
BLAST of mRNA_D-mesarthrocarpus_Contig10009.3.1 vs. uniprot
Match:
A0A836CC30_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC30_9STRA)
HSP 1 Score: 77.8 bits (190), Expect = 1.010e-15
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 1
Query: 1 MAGGQQTDHRVIVTGLPPSASWQDLKDHMRKAGDPTYTDV 120
M GG+QT+ RVIVTGLPPSASWQDLKDHMRKAGD YTDV
Sbjct: 114 MGGGRQTEWRVIVTGLPPSASWQDLKDHMRKAGDVVYTDV 153
BLAST of mRNA_D-mesarthrocarpus_Contig10009.3.1 vs. uniprot
Match:
A0A2A6CR05_PRIPA (Rsp-3 n=2 Tax=Pristionchus pacificus TaxID=54126 RepID=A0A2A6CR05_PRIPA)
HSP 1 Score: 72.8 bits (177), Expect = 3.900e-14
Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = 1
Query: 7 GGQQTDHRVIVTGLPPSASWQDLKDHMRKAGDPTYTDV 120
GG++T HRVIVTGLPP+ SWQDLKDHMR+AGD YTDV
Sbjct: 123 GGRRTSHRVIVTGLPPTGSWQDLKDHMREAGDVCYTDV 160
BLAST of mRNA_D-mesarthrocarpus_Contig10009.3.1 vs. uniprot
Match:
D8LPT5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPT5_ECTSI)
HSP 1 Score: 70.5 bits (171), Expect = 3.980e-13
Identity = 29/38 (76.32%), Postives = 33/38 (86.84%), Query Frame = 1
Query: 7 GGQQTDHRVIVTGLPPSASWQDLKDHMRKAGDPTYTDV 120
GG+QT++R +VTGLP SASWQDLKDHMRKAGD Y DV
Sbjct: 188 GGRQTEYRAVVTGLPQSASWQDLKDHMRKAGDVNYADV 225
BLAST of mRNA_D-mesarthrocarpus_Contig10009.3.1 vs. uniprot
Match:
A0A821HWE8_9NEOB ((mimic poison frog) hypothetical protein n=1 Tax=Ranitomeya imitator TaxID=111125 RepID=A0A821HWE8_9NEOB)
HSP 1 Score: 66.2 bits (160), Expect = 1.020e-12
Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = 1
Query: 16 QTDHRVIVTGLPPSASWQDLKDHMRKAGDPTYTDV 120
QT++RV+V+GLPPS SWQDLKDHMRKAGD Y DV
Sbjct: 68 QTEYRVLVSGLPPSGSWQDLKDHMRKAGDVCYADV 102
BLAST of mRNA_D-mesarthrocarpus_Contig10009.3.1 vs. uniprot
Match:
A0A0N5AVR9_9BILA (Uncharacterized protein n=1 Tax=Syphacia muris TaxID=451379 RepID=A0A0N5AVR9_9BILA)
HSP 1 Score: 68.2 bits (165), Expect = 1.440e-12
Identity = 27/39 (69.23%), Postives = 34/39 (87.18%), Query Frame = 1
Query: 7 GGQQTDHRVIVTGLPPSASWQDLKDHMRKAGDPTYTDVV 123
G ++T++RVI+TGLPPS SWQDLKDHMR+AGD Y+DV
Sbjct: 112 GSRRTNYRVIITGLPPSGSWQDLKDHMREAGDVCYSDVT 150
BLAST of mRNA_D-mesarthrocarpus_Contig10009.3.1 vs. uniprot
Match:
A0A7S0RPW5_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0RPW5_9CHLO)
HSP 1 Score: 67.8 bits (164), Expect = 1.540e-12
Identity = 29/37 (78.38%), Postives = 34/37 (91.89%), Query Frame = 1
Query: 13 QQTDHRVIVTGLPPSASWQDLKDHMRKAGDPTYTDVV 123
++TD+RVIVTGLP SASWQDLKDHMRKAGD T+T V+
Sbjct: 110 RRTDYRVIVTGLPLSASWQDLKDHMRKAGDVTFTQVM 146
BLAST of mRNA_D-mesarthrocarpus_Contig10009.3.1 vs. uniprot
Match:
F1KVJ6_ASCSU (Serine/arginine-rich splicing factor 1 n=2 Tax=Ascaris suum TaxID=6253 RepID=F1KVJ6_ASCSU)
HSP 1 Score: 67.4 bits (163), Expect = 2.640e-12
Identity = 27/40 (67.50%), Postives = 34/40 (85.00%), Query Frame = 1
Query: 4 AGGQQTDHRVIVTGLPPSASWQDLKDHMRKAGDPTYTDVV 123
+GG++T++RVIVTGLP S SWQDLKDHMR+AGD Y D+
Sbjct: 115 SGGRRTNYRVIVTGLPTSGSWQDLKDHMREAGDVCYADIT 154
BLAST of mRNA_D-mesarthrocarpus_Contig10009.3.1 vs. uniprot
Match:
UPI0009A265F1 (serine/arginine-rich splicing factor 1-like n=1 Tax=Rhincodon typus TaxID=259920 RepID=UPI0009A265F1)
HSP 1 Score: 66.2 bits (160), Expect = 3.340e-12
Identity = 27/38 (71.05%), Postives = 33/38 (86.84%), Query Frame = 1
Query: 13 QQTDHRVIVTGLPPSASWQDLKDHMRKAGDPTYTDVVG 126
+++D RVIV+GLPPS SWQDLKDHMR+AGD Y DV+G
Sbjct: 110 RRSDFRVIVSGLPPSGSWQDLKDHMREAGDVCYADVLG 147
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10009.3.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 25
0 1 Expect = 6.67e-17 / Id = 89.74 Expect = 5.92e-16 / Id = 85.00 Expect = 1.01e-15 / Id = 85.00 Expect = 3.90e-14 / Id = 78.95 Expect = 3.98e-13 / Id = 76.32 Expect = 1.02e-12 / Id = 77.14 Expect = 1.44e-12 / Id = 69.23 Expect = 1.54e-12 / Id = 78.38 Expect = 2.64e-12 / Id = 67.50 Expect = 3.34e-12 / Id = 71.05 Sequence D8LB97_ECTSI A0A835YQ88_9STRA A0A836CC30_9STRA A0A2A6CR05_PRIPA D8LPT5_ECTSI A0A821HWE8_9NEOB A0A0N5AVR9_9BILA A0A7S0RPW5_9CHLO F1KVJ6_ASCSU UPI0009A265F1 Pages
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1 Start 1 Seed ortholog 2880.D8LB97 Preferred name SR30 PFAMs RRM_1 Model size 144 Max annot lvl 2759|Eukaryota KEGG ko ko:K12890 KEGG Pathway ko03040,ko04657,ko05168,map03040,map04657,map05168 Hectar predicted targeting category no signal peptide or anchor GOs GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016604,GO:0016607,GO:0031974,GO:0031981,GO:0034641,GO:0035061,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363 Exons 1 Evalue 1.09e-17 EggNOG OGs COG0724@1|root,KOG0105@2759|Eukaryota Description RNA splicing Cds size 144 COG category L BRITE ko00000,ko00001,ko03041
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1680789146.8122258-CDS-D-mesarthrocarpus_Contig10009:4057..4201 1680789146.8122258-CDS-D-mesarthrocarpus_Contig10009:4057..4201 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig10009 4058..4201 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig10009.3.1
>prot_D-mesarthrocarpus_Contig10009.3.1 ID=prot_D-mesarthrocarpus_Contig10009.3.1|Name=mRNA_D-mesarthrocarpus_Contig10009.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=48bp
MAGGQQTDHRVIVTGLPPSASWQDLKDHMRKAGDPTYTDVVGLNSWG* back to top mRNA from alignment at D-mesarthrocarpus_Contig10009:4058..4201+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10009.3.1 ID=mRNA_D-mesarthrocarpus_Contig10009.3.1|Name=mRNA_D-mesarthrocarpus_Contig10009.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=144bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10009:4058..4201+ (Discosporangium mesarthrocarpum MT17_79)ATGGCAGGTGGCCAGCAGACAGACCACCGTGTCATTGTCACAGGTCTTCC
CCCCAGTGCCAGCTGGCAGGATCTCAAGGACCACATGCGCAAGGCAGGCG
ATCCCACATACACAGACGTGGTGGGTTTGAACTCTTGGGGTTAG back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10009:4058..4201+
>mRNA_D-mesarthrocarpus_Contig10009.3.1 ID=mRNA_D-mesarthrocarpus_Contig10009.3.1|Name=mRNA_D-mesarthrocarpus_Contig10009.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=144bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10009:4058..4201+ (Discosporangium mesarthrocarpum MT17_79) back to top