Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10009.2.1 vs. uniprot
Match:
D8LB97_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB97_ECTSI)
HSP 1 Score: 152 bits (383), Expect = 4.720e-43
Identity = 74/92 (80.43%), Postives = 85/92 (92.39%), Query Frame = 1
Query: 1 MSRVYVGNLPMDVTEKDLEDVFYKYGKIYDIDLKTPARPPAFGFVTFEDSRDAEEAVRARDGYEMDGSRLRVEISRGRRDRGDFGMGYGMRG 276
M+R+Y+GNLPMDVTEKD++DVFYK+G+I DIDLKTPARPPAFGF+TF+D+RDAEEAVRARDGY+MDGSRLRVEISRGRRD FGMG G G
Sbjct: 1 MARIYIGNLPMDVTEKDMDDVFYKFGRIVDIDLKTPARPPAFGFITFQDARDAEEAVRARDGYDMDGSRLRVEISRGRRD--PFGMGGGGHG 90
BLAST of mRNA_D-mesarthrocarpus_Contig10009.2.1 vs. uniprot
Match:
D8LPT5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPT5_ECTSI)
HSP 1 Score: 137 bits (344), Expect = 2.140e-37
Identity = 67/89 (75.28%), Postives = 78/89 (87.64%), Query Frame = 1
Query: 1 MSRVYVGNLPMDVTEKDLEDVFYKYGKIYDIDLKTPARPPAFGFVTFEDSRDAEEAVRARDGYEMDGSRLRVEISRGRRDRGDFGMGYG 267
MSR+Y+GNLPMD+ EKDLED+FYKYGKI D+ LK P RPPAFGFVTFEDSRDA+EAVRARDGY+ DG RLRVE+SRG+R+ FG G+G
Sbjct: 53 MSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDSRDADEAVRARDGYDFDGYRLRVEMSRGKRE---FGGGFG 138
BLAST of mRNA_D-mesarthrocarpus_Contig10009.2.1 vs. uniprot
Match:
A0A6H5KN34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN34_9PHAE)
HSP 1 Score: 135 bits (339), Expect = 4.050e-36
Identity = 66/89 (74.16%), Postives = 77/89 (86.52%), Query Frame = 1
Query: 1 MSRVYVGNLPMDVTEKDLEDVFYKYGKIYDIDLKTPARPPAFGFVTFEDSRDAEEAVRARDGYEMDGSRLRVEISRGRRDRGDFGMGYG 267
MSR+Y+GNLPMD+ EKDLED+FYKYGKI D+ LK P RPPAFGFVTFED RDA+EAVRARDGY+ DG RLRVE+SRG+R+ FG G+G
Sbjct: 61 MSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDPRDADEAVRARDGYDFDGYRLRVEMSRGKRE---FGGGFG 146
BLAST of mRNA_D-mesarthrocarpus_Contig10009.2.1 vs. uniprot
Match:
A0A836CC30_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC30_9STRA)
HSP 1 Score: 132 bits (332), Expect = 2.460e-35
Identity = 63/82 (76.83%), Postives = 73/82 (89.02%), Query Frame = 1
Query: 1 MSRVYVGNLPMDVTEKDLEDVFYKYGKIYDIDLKTPARPPAFGFVTFEDSRDAEEAVRARDGYEMDGSRLRVEISRGRRDRG 246
M+RVYVGNLPM+V EKD+ED+FYKYG+I DIDLKTPARPP+F FV FED RDAE+AV RDGYEMDG RLRVE++RG R+RG
Sbjct: 1 MARVYVGNLPMNVREKDVEDLFYKYGRIRDIDLKTPARPPSFAFVAFEDVRDAEDAVSGRDGYEMDGQRLRVELARGARERG 82
BLAST of mRNA_D-mesarthrocarpus_Contig10009.2.1 vs. uniprot
Match:
A0A835YQ88_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ88_9STRA)
HSP 1 Score: 130 bits (326), Expect = 5.390e-35
Identity = 62/79 (78.48%), Postives = 72/79 (91.14%), Query Frame = 1
Query: 1 MSRVYVGNLPMDVTEKDLEDVFYKYGKIYDIDLKTPARPPAFGFVTFEDSRDAEEAVRARDGYEMDGSRLRVEISRGRR 237
M+RVYVGNLPM+V EKD+ED+FYK+G+I DIDLKTPARPPAF FV F+D RDAE+AVRARDGYEMDG RLRVE++RG R
Sbjct: 1 MARVYVGNLPMNVREKDVEDLFYKFGRIRDIDLKTPARPPAFAFVAFDDVRDAEDAVRARDGYEMDGERLRVELARGAR 79
BLAST of mRNA_D-mesarthrocarpus_Contig10009.2.1 vs. uniprot
Match:
A0A7S3UTA7_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTA7_HETAK)
HSP 1 Score: 119 bits (299), Expect = 2.540e-32
Identity = 55/82 (67.07%), Postives = 70/82 (85.37%), Query Frame = 1
Query: 1 MSRVYVGNLPMDVTEKDLEDVFYKYGKIYDIDLKTPARPPAFGFVTFEDSRDAEEAVRARDGYEMDGSRLRVEISRGRRDRG 246
MSR+Y+GNLP+D+TE+++ED+FYKYG+I I +K P+RPPAF FV FED+RDAE+AV RDGY+ DG R+RVEIS GR DRG
Sbjct: 22 MSRIYIGNLPIDITEREIEDLFYKYGRIIQISVKNPSRPPAFAFVEFEDARDAEDAVYGRDGYDFDGERIRVEISHGR-DRG 102
BLAST of mRNA_D-mesarthrocarpus_Contig10009.2.1 vs. uniprot
Match:
A0A7S2B3I3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B3I3_9STRA)
HSP 1 Score: 118 bits (296), Expect = 3.330e-32
Identity = 53/77 (68.83%), Postives = 67/77 (87.01%), Query Frame = 1
Query: 7 RVYVGNLPMDVTEKDLEDVFYKYGKIYDIDLKTPARPPAFGFVTFEDSRDAEEAVRARDGYEMDGSRLRVEISRGRR 237
R++VGNLPMD+ E+D+ED+FYKYG++ DI LKTP+RPPAF F+TF+D RDA++AVR RDGY + G RLRVEI RGRR
Sbjct: 8 RIFVGNLPMDIRERDIEDLFYKYGRMSDIHLKTPSRPPAFAFITFDDRRDADDAVRGRDGYSLGGERLRVEIVRGRR 84
BLAST of mRNA_D-mesarthrocarpus_Contig10009.2.1 vs. uniprot
Match:
T0QQQ1_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QQQ1_SAPDV)
HSP 1 Score: 116 bits (291), Expect = 5.630e-31
Identity = 54/82 (65.85%), Postives = 69/82 (84.15%), Query Frame = 1
Query: 7 RVYVGNLPMDVTEKDLEDVFYKYGKIYDIDLKTPARPPAFGFVTFEDSRDAEEAVRARDGYEMDGSRLRVEISRGR-RDRGD 249
R+YVGNLPMDV ++++D+FYKYG+I DID+K P+RPPAF FV FED RDA++A+R RDGY DG+RLRVE ++G RDRGD
Sbjct: 4 RIYVGNLPMDVRTREIDDLFYKYGRIVDIDIKLPSRPPAFAFVEFEDERDADDAIRGRDGYRFDGARLRVEPTKGGYRDRGD 85
BLAST of mRNA_D-mesarthrocarpus_Contig10009.2.1 vs. uniprot
Match:
A0A6A3MJN0_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3MJN0_9STRA)
HSP 1 Score: 120 bits (301), Expect = 5.720e-31
Identity = 60/89 (67.42%), Postives = 74/89 (83.15%), Query Frame = 1
Query: 1 MSRVYVGNLPMDVTEKDLEDVFYKYGKIYDIDLKTPARPPAFGFVTFEDSRDAEEAVRARDGYEMDGSRLRVEISRG-RRDRG-DFGMG 261
MSRVYVGNLPMD+ +++ED+FYKYG+I DID+K P+RPPAF FV FED+RDAE+A+R RDGY+ DG+RLRVE + G RRD G D G G
Sbjct: 1 MSRVYVGNLPMDIRTREVEDIFYKYGRIRDIDVKFPSRPPAFAFVDFEDARDAEDAIRGRDGYDYDGARLRVEPANGGRRDSGRDAGRG 89
BLAST of mRNA_D-mesarthrocarpus_Contig10009.2.1 vs. uniprot
Match:
A0A3L6UTM2_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6UTM2_9STRA)
HSP 1 Score: 115 bits (289), Expect = 1.040e-30
Identity = 60/98 (61.22%), Postives = 74/98 (75.51%), Query Frame = 1
Query: 4 SRVYVGNLPMDVTEKDLEDVFYKYGKIYDIDLKTPARPPAFGFVTFEDSRDAEEAVRARDGYEMDGSRLRVEIS------RGRRDRG-DFGMGYGMRG 276
+RVYVGNLPMDV ++L+D+FYKYG+I DID+K P+RPPAF FV FE SRDA++A+R RDGY+ DG RLRVE + RG RDRG D G G + G
Sbjct: 3 TRVYVGNLPMDVRTRELDDLFYKYGRIRDIDIKQPSRPPAFAFVEFEHSRDADDAIRGRDGYQFDGQRLRVERTNGGGGGRGDRDRGGDKGFGRNLMG 100
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10009.2.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 25
0 1 Expect = 4.72e-43 / Id = 80.43 Expect = 2.14e-37 / Id = 75.28 Expect = 4.05e-36 / Id = 74.16 Expect = 2.46e-35 / Id = 76.83 Expect = 5.39e-35 / Id = 78.48 Expect = 2.54e-32 / Id = 67.07 Expect = 3.33e-32 / Id = 68.83 Expect = 5.63e-31 / Id = 65.85 Expect = 5.72e-31 / Id = 67.42 Expect = 1.04e-30 / Id = 61.22 Sequence D8LB97_ECTSI D8LPT5_ECTSI A0A6H5KN34_9PHAE A0A836CC30_9STRA A0A835YQ88_9STRA A0A7S3UTA7_HETAK A0A7S2B3I3_9STRA T0QQQ1_SAPDV A0A6A3MJN0_9STRA A0A3L6UTM2_9STRA
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 0
Start 1
Seed ortholog 2880.D8LB97
Preferred name SR30
PFAMs RRM_1
Model size 318
Max annot lvl 2759|Eukaryota
KEGG ko ko:K12890
KEGG Pathway ko03040,ko04657,ko05168,map03040,map04657,map05168
Hectar predicted targeting category other localisation
GOs GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016604,GO:0016607,GO:0031974,GO:0031981,GO:0034641,GO:0035061,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363
Exons 2
Evalue 7.74e-44
EggNOG OGs COG0724@1|root,KOG0105@2759|Eukaryota
Description RNA splicing
Cds size 318
COG category L
BRITE ko00000,ko00001,ko03041
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1680789146.7649996-CDS-D-mesarthrocarpus_Contig10009:2485..2664 1680789146.7649996-CDS-D-mesarthrocarpus_Contig10009:2485..2664 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig10009 2486..2664 +
1680789146.7796392-CDS-D-mesarthrocarpus_Contig10009:3132..3271 1680789146.7796392-CDS-D-mesarthrocarpus_Contig10009:3132..3271 Discosporangium mesarthrocarpum MT17_79 CDS D-mesarthrocarpus_Contig10009 3133..3271 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig10009.2.1
>prot_D-mesarthrocarpus_Contig10009.2.1 ID=prot_D-mesarthrocarpus_Contig10009.2.1|Name=mRNA_D-mesarthrocarpus_Contig10009.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=106bp
MSRVYVGNLPMDVTEKDLEDVFYKYGKIYDIDLKTPARPPAFGFVTFEDS RDAEEAVRARDGYEMDGSRLRVEISRGRRDRGDFGMGYGMRGMGRGMGGR GGGGIG back to top mRNA from alignment at D-mesarthrocarpus_Contig10009:2486..3271+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10009.2.1 ID=mRNA_D-mesarthrocarpus_Contig10009.2.1|Name=mRNA_D-mesarthrocarpus_Contig10009.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=786bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10009:2486..3271+ (Discosporangium mesarthrocarpum MT17_79)ATGTCTCGCGTGTACGTGGGAAACCTTCCCATGGATGTGACCGAGAAGGA
CCTGGAAGATGTGTTCTATAAATACGGGAAGATATATGACATTGACCTCA
AGACTCCAGCCAGGCCCCCGGCGTTTGGCTTTGTCACTTTCGAGGATTCC
CGCGACGCCGAGGAAGCCGTGAGGGCAAG GTCCGCCTTAGTGTGACTGGG
AATTGGGGGGTGAAGGGTGTGGCTTAAGTACTTGTTACTCCAATCCTTTA
TCTTAACTTCTTTGATTTGCCGAGTACCGACTGACCCTAACCTTTTCTCT
TCATAGTGAAGCACAAACCTCGATACTTCTAACCGAAAGCCAGAAGAAGA
CAGGGTTATATGTGTTGAAATTGACCACATTTTTTTTTATGGAGTGCGTT
TCCATTCTTCCTAAGAATTTGCCTGTAGTTGTCTAACGGTGTAACCGGTA
TGTGAAGATGCTACTAAAGTACCTTGCAAAGGCGATCCCCGTTGCGCAAC
CAAGCGACTGCCCATGCGCAACCAACACAAGCCTCCCCGCACTCCTCAAG
CTTAACCTGGGATTTAACGGTACCGCCACGATTTCACCCCACCTCTGGTG
CTCTATATATCTCAACACGGAAACGGGTTATTGGAAACTGGGCGCAGGGA
TGGGTATGAGATGGATGGGAGCCGACTGCGTGTTGAGATCTCGCGTGGCC
GGCGGGACCGGGGAGACTTTGGCATGGGATACGGAATGCGAGGGATGGGC
AGAGGCATGGGTGGGCGGGGTGGTGGCGGAATTGGT back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10009:2486..3271+
>mRNA_D-mesarthrocarpus_Contig10009.2.1 ID=mRNA_D-mesarthrocarpus_Contig10009.2.1|Name=mRNA_D-mesarthrocarpus_Contig10009.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=318bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10009:2486..3271+ (Discosporangium mesarthrocarpum MT17_79) ATGTCTCGCGTGTACGTGGGAAACCTTCCCATGGATGTGACCGAGAAGGA CCTGGAAGATGTGTTCTATAAATACGGGAAGATATATGACATTGACCTCA AGACTCCAGCCAGGCCCCCGGCGTTTGGCTTTGTCACTTTCGAGGATTCC CGCGACGCCGAGGAAGCCGTGAGGGCAAGGGATGGGTATGAGATGGATGG GAGCCGACTGCGTGTTGAGATCTCGCGTGGCCGGCGGGACCGGGGAGACT TTGGCATGGGATACGGAATGCGAGGGATGGGCAGAGGCATGGGTGGGCGG GGTGGTGGCGGAATTGGT back to top