mRNA_D-mesarthrocarpus_Contig10317.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10317.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10317.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10317.1.1 vs. uniprot
Match: D8LAZ1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAZ1_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 7.390e-23
Identity = 50/80 (62.50%), Postives = 60/80 (75.00%), Query Frame = 1 
Query:   67 LLFGLRRKGSPGMPSASVLDHASMRFRDRVRGEFLPSRVLETQLYIFARQCALYFDLQRPSEVARCAGRFMPAYYSEIMG 306
            LLFGL     P    ASVLD+  MRFR+R+ G+ L S VLETQLYIFARQCAL  +L++P+EVAR  GRFMPAYY E++G
Sbjct:  479 LLFGLAIPSQPQRLPASVLDYGQMRFRERLNGDGLHSLVLETQLYIFARQCALNLELKKPAEVARMGGRFMPAYYHELVG 558
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BLAST of mRNA_D-mesarthrocarpus_Contig10317.1.1 vs. uniprot
Match: A0A835YQQ4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQQ4_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.360e-12
Identity = 39/79 (49.37%), Postives = 51/79 (64.56%), Query Frame = 1 
Query:   67 LLFGLRRKGSPGMPSASVLDHASMRFRDRVRGEFLPSRVLETQLYIFARQCALYFDLQRPSEVARCAGRFMPAYYSEIM 303
            LLFGL    S    + SVLD+  M+ R RV    L S VL+TQLYIFARQC LY D+ RP E+A+C   F+ A++ E++
Sbjct:  535 LLFGLP-SASGTAQACSVLDYRKMKLRQRVYPGSLFSFVLDTQLYIFARQCHLYLDMGRPDELAKCGIAFIRAFHQELL 612
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10317.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LAZ1_ECTSI7.390e-2362.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YQQ4_9STRA1.360e-1249.37Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10317contigD-mesarthrocarpus_Contig10317:318..2138 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LAZ1
PFAMsFoie-gras_1
Model size320
Max annot lvl2759|Eukaryota
KEGG koko:K20307,ko:K20476
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.21e-23
EggNOG OGsKOG1931@1|root,KOG1931@2759|Eukaryota
Descriptionearly endosome to Golgi transport
Cds size318
COG categoryS
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789172.4862068-CDS-D-mesarthrocarpus_Contig10317:317..4291680789172.4862068-CDS-D-mesarthrocarpus_Contig10317:317..429Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10317 318..429 +
1680789172.4983494-CDS-D-mesarthrocarpus_Contig10317:1096..12441680789172.4983494-CDS-D-mesarthrocarpus_Contig10317:1096..1244Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10317 1097..1244 +
1680789172.5099752-CDS-D-mesarthrocarpus_Contig10317:2080..21381680789172.5099752-CDS-D-mesarthrocarpus_Contig10317:2080..2138Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10317 2081..2138 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10317.1.1prot_D-mesarthrocarpus_Contig10317.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10317 318..2138 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10317.1.1

>prot_D-mesarthrocarpus_Contig10317.1.1 ID=prot_D-mesarthrocarpus_Contig10317.1.1|Name=mRNA_D-mesarthrocarpus_Contig10317.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=106bp
KGKGSTRGGVGGEGKEEELTPFLLFGLRRKGSPGMPSASVLDHASMRFRD
RVRGEFLPSRVLETQLYIFARQCALYFDLQRPSEVARCAGRFMPAYYSEI
MGLIGG
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mRNA from alignment at D-mesarthrocarpus_Contig10317:318..2138+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10317.1.1 ID=mRNA_D-mesarthrocarpus_Contig10317.1.1|Name=mRNA_D-mesarthrocarpus_Contig10317.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1821bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10317:318..2138+ (Discosporangium mesarthrocarpum MT17_79)
AAGGGGAAGGGGTCTACCAGGGGGGGGGTGGGGGGGGAGGGGAAGGAAGA
GGAGCTGACCCCTTTCCTGCTCTTTGGCTTGAGGAGGAAGGGTTCCCCAG
GGATGCCGTCAGGTTTGTTTTACCTGTTCTATTCGTTTTAACTGCTTTAT
GTGTGCTTATGTGCTTTATGTGCTTTATGTGCTTTATGTGCTTTATGTAC
TTTATGTGCTTTTATGTGCTTCGTGTGCTTTGTGTGCTTTATGTGCTTTG
TGTGCTGTGTTTTGTGTGTTTAAGTGTATTTTTGTGTGATGTGTTTTGTG
TGTTTAAATGTGTTTTTGTGTGATGTGTTTTGTGTGTTGAATATATTTTC
GTGTTTAAAATATGTTTATGTGCTTTAAATATGTTTATGTGCTGTATATA
TGTTAATGTGCTGTAAATATATTTATGTGCTGTAAACGTGTTTATGTGCT
GTAAACATATTTATGTGCTTTATACATGTTTGTGTGCTGTAAACATGTTT
ATGTGCTGTAAACATATTTATGTGCTTTATATATGTTTGTGTGCTGTAAA
CGTGTTTATGTGCTGTAAACATATTTATGTGCTTTTATACATGTTTGTGT
GCCGTAAACGTTCTTTTCTTTTTTTCATGTGTTGCGCGTGTTACGGGGGG
TGTTAGGTCCAGGCGCGTTCCTTGCTCTACTGCCGAGGTGGACCTCTACC
CCCGGACGCGCACCCACCCTCTCCCCCGTACCCCTAAAAACCCATTCTCC
CTGACCTTGCTGCTGCTATTGATGCTCAGCTTCGGTTCTGGACCATGCCA
GCATGCGCTTCCGGGACCGGGTCCGGGGGGAGTTCCTACCCAGTCGCGTG
CTTGAGACGCAGCTATACATCTTTGCCCGGCAGTGCGCCCTTTACTTTGA
CCTCCAACGGCCATCTGAGGTGGCAAGGTCGGCAAGAGGGGGGGTGGGGG
GGCAGGAGGGGAAGGAGGGGTGGCAGGAGGGGAAGGAAGGAGGGGGGGCA
CACACGCTATGCTATTGTCTTTTCTTTTTTTTTTTTTCCTGGGATGGCGA
AGAGTTCACGGATTAGGGTTAGGGCTAGGCTCACTTGGTGGCGTGCATAG
TTTATTTTTGCTGCAAGTATGAGGCAGTGGACGGCGCTTGGAATCACTTT
CTTCGGTCTACCGTTCAGTATACTGTTCAATACGCAGTTCAGTATTTGTT
ACCACGGCTTATTCTAATGTTCACAGGAAACAGGGGAAACTGATACTAAT
TGGGAGGGGTGCATGACAATGGCGGGGCTGTCTCAGGGTGACAAAGGCCG
CAGGGTCAGGGCAGAAACTCGGTTGCTCATGCCCACGGATTTCAGGGTTC
ATATTGGAAAGGAGGTGTGATCTCGAAATCCTCTGTTGGATGGACTGCAG
TTCACATGCTGTGATGCTTTTCATGTGGAACTCAGTGTTTTCAAATATGT
GGTGTCTCGGTGACACACCTTCAAGGCATTATTCTCTCTCTCTTTCCCTC
CCTCTCTCCTTCAACCCCTCCCTTATAGCATTCAATGGCATGAGCTACCA
CTCCTGCTACTCCTACTACTACTTCTACTTCTACTTCTACTACCTACTAC
TACTACTACTACTACTACTACTACTACTACTACTACTACCTACTACTACT
ACTACTACTACTACTACTACCTACTACTACTACTACTACAACAACAACTA
CTACTACGACAACAACTAGGACAGCCAATGTATCTGACATGAACAATGCG
ACCAATAACGCAGGTGTGCTGGGCGCTTCATGCCTGCCTACTACTCGGAG
ATCATGGGGCTGATAGGTGGC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10317:318..2138+

>mRNA_D-mesarthrocarpus_Contig10317.1.1 ID=mRNA_D-mesarthrocarpus_Contig10317.1.1|Name=mRNA_D-mesarthrocarpus_Contig10317.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=318bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10317:318..2138+ (Discosporangium mesarthrocarpum MT17_79)
AAGGGGAAGGGGTCTACCAGGGGGGGGGTGGGGGGGGAGGGGAAGGAAGA
GGAGCTGACCCCTTTCCTGCTCTTTGGCTTGAGGAGGAAGGGTTCCCCAG
GGATGCCGTCAGCTTCGGTTCTGGACCATGCCAGCATGCGCTTCCGGGAC
CGGGTCCGGGGGGAGTTCCTACCCAGTCGCGTGCTTGAGACGCAGCTATA
CATCTTTGCCCGGCAGTGCGCCCTTTACTTTGACCTCCAACGGCCATCTG
AGGTGGCAAGGTGTGCTGGGCGCTTCATGCCTGCCTACTACTCGGAGATC
ATGGGGCTGATAGGTGGC
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