Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10003.1.2 vs. uniprot
Match:
D7G5S1_ECTSI (Putaive LSm10 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5S1_ECTSI)
HSP 1 Score: 110 bits (275), Expect = 8.820e-28
Identity = 59/117 (50.43%), Postives = 79/117 (67.52%), Query Frame = 3
Query: 159 RAKRVPQLEKTLAILVQGMRGHTVVVEMKNDVEITGVLEETDKDMKLVIDFFLCIRLLLSASLPSDCQTMR--KKTWEQGGVKTMEMAFVQGKMVRYVHIPDDVDAIKTLHKHVSTV 503
R K+ LEKTLAIL+Q MRG+ +VVEMKND EI+G+LEETD++MK + L S + P+ +M ++T G V+ M++ VQGKM+RYVHIPD VDAI L KH+ T+
Sbjct: 12 RQKKTSPLEKTLAILIQSMRGNKIVVEMKNDAEISGILEETDRNMKAATVWLAAYGLTCSRAGPAPSLSMVDVRQTNPDGSVRKMDVVLVQGKMIRYVHIPDKVDAISNLQKHMRTM 128
BLAST of mRNA_D-mesarthrocarpus_Contig10003.1.2 vs. uniprot
Match:
A0A6H5JYY5_9PHAE (Sm domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYY5_9PHAE)
HSP 1 Score: 70.9 bits (172), Expect = 4.840e-13
Identity = 39/89 (43.82%), Postives = 53/89 (59.55%), Query Frame = 3
Query: 240 MKNDVEITGVLEETDKDMKL-VIDFFLCIRLLLSASLPSDCQTMRKKTWEQGGVKTMEMAFVQGKMVRYVHIPDDVDAIKTLHKHVSTV 503
MKND EI+G+LEETD++M L ++D ++T G V+ M++ VQGKM+RYVHIPD VDAI L KH+ T+
Sbjct: 1 MKNDAEISGILEETDRNMNLSMVDV--------------------RQTNPDGSVRKMDVVLVQGKMIRYVHIPDKVDAISNLQKHMRTM 69
BLAST of mRNA_D-mesarthrocarpus_Contig10003.1.2 vs. uniprot
Match:
UPI000E456FA5 (U7 snRNA-associated Sm-like protein LSm10 n=1 Tax=Mastacembelus armatus TaxID=205130 RepID=UPI000E456FA5)
HSP 1 Score: 58.2 bits (139), Expect = 1.100e-7
Identity = 33/108 (30.56%), Postives = 59/108 (54.63%), Query Frame = 3
Query: 183 EKTLAILVQGMRGHTVVVEMKNDVEITGVLEETDKDMKLVIDFFLCIRLLLSASLPSDCQTMRKKTWEQGGVKTMEMAFVQGKMVRYVHIPDDVDAIKTLHKHVSTVH 506
E ++ +L+QG++G V+++N E T + + +D F+ IRL + + + W +G + ++ FV G+ VRYVHIPD VD +KT+H ++ +H
Sbjct: 29 ENSMVLLLQGLQGEVTTVDLRN--------ESTAQGRVVNVDAFMNIRL----------EEVLYRDW-RGNLTQLQDLFVTGRNVRYVHIPDHVDIMKTMHNQLAKIH 117
BLAST of mRNA_D-mesarthrocarpus_Contig10003.1.2 vs. uniprot
Match:
A0A131X8Y5_9ACAR (Putative small nuclear ribonucleoprotein smd1 n=1 Tax=Hyalomma excavatum TaxID=257692 RepID=A0A131X8Y5_9ACAR)
HSP 1 Score: 55.8 bits (133), Expect = 7.800e-7
Identity = 31/101 (30.69%), Postives = 51/101 (50.50%), Query Frame = 3
Query: 180 LEKTLAILVQGMRGHTVVVEMKNDVEITGVLEETDKDMKLVIDFFLCIRLLLSASLPSDCQTMRKKTWEQGGVKTMEMAFVQGKMVRYVHIPDDVDAIKTL 482
+ K+L +++Q +RG +E++N++ I G +E D M + + SD + G +T FVQG+ VRYVHIPDD+D + +L
Sbjct: 10 ISKSLVLMLQSLRGRQTTIELRNELSIYGTVENVDAFMNVDL---------------SDATVVGPN-----GEETYASFFVQGRQVRYVHIPDDIDMVASL 90
BLAST of mRNA_D-mesarthrocarpus_Contig10003.1.2 vs. uniprot
Match:
A0A6I9PRP2_9TELE (U7 snRNA-associated Sm-like protein LSm10 n=3 Tax=Notothenioidei TaxID=8205 RepID=A0A6I9PRP2_9TELE)
HSP 1 Score: 55.8 bits (133), Expect = 8.260e-7
Identity = 32/108 (29.63%), Postives = 57/108 (52.78%), Query Frame = 3
Query: 183 EKTLAILVQGMRGHTVVVEMKNDVEITGVLEETDKDMKLVIDFFLCIRLLLSASLPSDCQTMRKKTWEQGGVKTMEMAFVQGKMVRYVHIPDDVDAIKTLHKHVSTVH 506
E ++ +L+QG++G VE++N+ G + +D F+ +RL D T + + + +K M F+ G+ +RYVHIPD VD +KT+ H++ +H
Sbjct: 30 ENSMVVLLQGLQGEVTTVELRNESSARGRVVN--------VDAFMNVRL--------DDVTYKDRRGKSSQLKDM---FITGRNIRYVHIPDHVDIMKTIEGHLAKIH 118
BLAST of mRNA_D-mesarthrocarpus_Contig10003.1.2 vs. uniprot
Match:
A0A7I4A3P4_PHYPA (Sm domain-containing protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4A3P4_PHYPA)
HSP 1 Score: 57.0 bits (136), Expect = 8.850e-7
Identity = 32/107 (29.91%), Postives = 58/107 (54.21%), Query Frame = 3
Query: 183 EKTLAILVQGMRGHTVVVEMKNDVEITGVLEETDKDMKLVIDFFLCIRLLLSASLPSDCQTMRKKTWE--QGGVKTMEMAFVQGKMVRYVHIPDDVDAIKTLHKHVS 497
E+TL ++Q + G ++VE++ND+ I G+L++ D M ++I + T E +G K + + F++G +R+VHIPD+VD +K + + VS
Sbjct: 81 ERTLVCVIQALMGLELLVELRNDLSIRGILDDCDNAMNVII---------------------KDATVEDVEGVQKQLPLVFLRGSNIRFVHIPDNVDIMKLVEERVS 166
BLAST of mRNA_D-mesarthrocarpus_Contig10003.1.2 vs. uniprot
Match:
UPI00140222DA (U7 snRNA-associated Sm-like protein LSm10 n=1 Tax=Amblyraja radiata TaxID=386614 RepID=UPI00140222DA)
HSP 1 Score: 55.1 bits (131), Expect = 1.140e-6
Identity = 34/108 (31.48%), Postives = 55/108 (50.93%), Query Frame = 3
Query: 183 EKTLAILVQGMRGHTVVVEMKNDVEITGVLEETDKDMKLVIDFFLCIRLLLSASLPSDCQTMRKKTWEQGGVKTMEMAFVQGKMVRYVHIPDDVDAIKTLHKHVSTVH 506
E +L IL+QG+ GH VE++++ + G + +D F+ +RL S L +D G ++ FV G+ VRYVHIPD++ I T+H + +H
Sbjct: 14 ENSLIILLQGIHGHVTTVELRDESSVRGRIVN--------VDAFMNVRL--SEVLYTD---------RAGKALQLDDFFVTGRNVRYVHIPDEISIIDTIHSQLQKIH 102
BLAST of mRNA_D-mesarthrocarpus_Contig10003.1.2 vs. uniprot
Match:
A0A4W6CCR8_LATCA (Organic solute carrier partner 1a n=2 Tax=Lates calcarifer TaxID=8187 RepID=A0A4W6CCR8_LATCA)
HSP 1 Score: 55.1 bits (131), Expect = 1.220e-6
Identity = 30/108 (27.78%), Postives = 58/108 (53.70%), Query Frame = 3
Query: 183 EKTLAILVQGMRGHTVVVEMKNDVEITGVLEETDKDMKLVIDFFLCIRLLLSASLPSDCQTMRKKTWEQGGVKTMEMAFVQGKMVRYVHIPDDVDAIKTLHKHVSTVH 506
E ++ +L+QG++G V+++N E T + + +D F+ +RL + + + W +G V ++ F+ G+ +RYVHIPD VD +KT+ ++ +H
Sbjct: 16 ENSMVVLLQGLQGEVTTVDLRN--------ESTARGRVVNVDAFMNVRL----------EDVLYRDW-RGQVTRLQDLFITGRNIRYVHIPDHVDIMKTIQSQLAKIH 104
BLAST of mRNA_D-mesarthrocarpus_Contig10003.1.2 vs. uniprot
Match:
A0A8C4DJ85_DICLA (Organic solute carrier partner 1a n=2 Tax=Moronidae TaxID=42148 RepID=A0A8C4DJ85_DICLA)
HSP 1 Score: 54.7 bits (130), Expect = 1.410e-6
Identity = 33/108 (30.56%), Postives = 58/108 (53.70%), Query Frame = 3
Query: 183 EKTLAILVQGMRGHTVVVEMKNDVEITGVLEETDKDMKLVIDFFLCIRLLLSASLPSDCQTMRKKTWEQGGVKTMEMAFVQGKMVRYVHIPDDVDAIKTLHKHVSTVH 506
E ++ +L+QG++G V++KN E T + + +D F+ IRL D R + +G + ++ F+ G+ VRYVHIPD+VD +KT+ ++ +H
Sbjct: 7 ENSMVVLLQGLQGQVTTVDLKN--------ESTARGRVVNVDAFMNIRL--------DNVLYRDR---RGQLTQLQDLFITGRNVRYVHIPDNVDIMKTIQSQLARIH 95
BLAST of mRNA_D-mesarthrocarpus_Contig10003.1.2 vs. uniprot
Match:
UPI001B3A82A0 (U7 snRNA-associated Sm-like protein LSm10 n=1 Tax=Toxotes jaculatrix TaxID=941984 RepID=UPI001B3A82A0)
HSP 1 Score: 55.1 bits (131), Expect = 1.570e-6
Identity = 30/108 (27.78%), Postives = 58/108 (53.70%), Query Frame = 3
Query: 183 EKTLAILVQGMRGHTVVVEMKNDVEITGVLEETDKDMKLVIDFFLCIRLLLSASLPSDCQTMRKKTWEQGGVKTMEMAFVQGKMVRYVHIPDDVDAIKTLHKHVSTVH 506
E ++ +L+QG++G V+M+N E T + + +D F+ IR+ + + + W +G + ++ F+ G+ VRY+HIPD VD +KT+ ++ +H
Sbjct: 29 ENSMVVLLQGLQGEVTTVDMRN--------ESTARGRVVSVDAFMNIRM----------EEVLYRDW-RGQLTQLQDMFITGRNVRYIHIPDHVDIMKTIQSQLAKIH 117
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10003.1.2 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 25
0 1 Expect = 8.82e-28 / Id = 50.43 Expect = 4.84e-13 / Id = 43.82 Expect = 1.10e-7 / Id = 30.56 Expect = 7.80e-7 / Id = 30.69 Expect = 8.26e-7 / Id = 29.63 Expect = 8.85e-7 / Id = 29.91 Expect = 1.14e-6 / Id = 31.48 Expect = 1.22e-6 / Id = 27.78 Expect = 1.41e-6 / Id = 30.56 Expect = 1.57e-6 / Id = 27.78 Sequence D7G5S1_ECTSI A0A6H5JYY5_9PHAE UPI000E456FA5 A0A131X8Y5_9ACAR A0A6I9PRP2_9TELE A0A7I4A3P4_PHYPA UPI00140222DA A0A4W6CCR8_LATCA A0A8C4DJ85_DICLA UPI001B3A82A0 Pages
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Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig10003.1.2
>prot_D-mesarthrocarpus_Contig10003.1.2 ID=prot_D-mesarthrocarpus_Contig10003.1.2|Name=mRNA_D-mesarthrocarpus_Contig10003.1.2|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=167bp
MSEERLPLRPARNSPLPPLAEEREGSGKGTETSTGERIERTKRRRAKRVP back to top mRNA from alignment at D-mesarthrocarpus_Contig10003:345..3119-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10003.1.2 ID=mRNA_D-mesarthrocarpus_Contig10003.1.2|Name=mRNA_D-mesarthrocarpus_Contig10003.1.2|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2775bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10003:345..3119- (Discosporangium mesarthrocarpum MT17_79)GAAGGGGTAGGACTATTGCGGCATGG ATGTCCGAGGAACGACTTCCCTTA
CGACCCGCGCGAAATTCACCACTCCCTCCGTTAG GTGAGAGTTTAAATTT
ATTCCCGTGGACGGCTCTTTTCTTATGCCAGTGGTAATACGTTAACATAC
ATGTGATTTTGAATTGTCTGCCATATTTCAGCAGAAGAGAGAGAGGGATC
AGGGAAAGGGACAGAGACCTCAACTGGGGAGCGTATAGAGAGGACAAAAC
GAAGGCGGGCAAAACGAGTCCCTCAGCTAGAGAAAACCCTTGCCATCCTG
GTTCAG GTGAGGTGGAGTCGTCTCGTTGGTCACGAATGCCAGTTGCAGGG
TTTGTTCAGATAGTCGACTACCCCATTGTGTCCACGGCATGTGCATTGGG
TGTGATCAATACGGTCAACTCTGTTCCTTTGAAGGTACGACCTGCAGTGC
GATGCGGTGAACGGGGGGACGGAGCACGAAAGTCAAGACACGAGGAATTC
TACGTTGCCCAAGCCCCAGTAGTTGAAATTGTTATTATGGCCCATAATGC
AGCATGACGATCCGCAACCCAGGGCAAAAAATCTACTTCTACGAATCCCC
CATAGCGCACTGCCCCTGGACCTAGGTACCTTATTGGGTACGATGCTAAT
GCCAGAGGAATTTGTAGATCGTTGTTTGGCTAGAAACTTCCTCAAATTAG
CCGACTCTCAATCGATACTTCTGCTGAGATTGCGACTCAGATAATCATCT
GTGGACTGAATTTTGGCCCACGGAGTGCAGTACCGGATTTACAAACATGA
GAGTGATAGTTGCCGAGAAGAAAAGGATGCCTTGGCTGCCTGGCATCACG
AAGTTAAGCCACCTTTCCTCACGTGTTCATTCTCAAAACTTATCTCTTGT
GACTTACCAGGCAGGGGGAGGGGAGGAGGGGGTGCTACTTGCAGCGCAAT
TAAGCCTCTTACAGTTACAACAGTTTCAATAGTTCTGTGTTAATGCAGGT
TCTCAGTTCTCCTGGTCTGACCCCCCTCCTGTACCACTGGTGCCACTGCC
TGCCTACTCCATCTGCTTGCTCTTGTTCCAGGGCATGAGGGGGCATACGG
TGGTGGTTGAGATGAAGAACGACGTGGAGATCACGGGGGTGCTTGAGGAG
ACAGACAAAGATATGAAGTTAGTTATTGACTTTTTCCTATGCATTCGACT
CTTGCTGTCAGCAAGTCTGCCGTCAGACTGCCAAACTATGCGGAAAAAAA
CCTGGGAACAG GTTTTTGGTTGAGGATTTCGTGCAGCAAATTGGCTTCTG
AGGGCAAGTGTCTTGCGATTGGGGTGTACCATATTTTCATATGGGTGCCC
ATAAGAATGGTTTCTCAGTCGCTGATTCTGGTTGACCACAAGAAATTGGA
TCAACGACAGAATGGATGTTGACTTCAGGGAGTGGTTGTAAGGTAGCACA
TCAAGCATGGGTTGTATCAGTTAGCTTGTTCAATTGTTGTGTGTTGTAGT
GCCACCTGCACAACCCCCCAGCGATGAGGGCTTGACAAAAACTCTCTCCA
CACAGAATATATCACTCACAAGGCAGTGGCAGGAAGAGGCCCCACCAACC
CATGCGCCTGTTCTCCCCATCTCTTGCATCTCCCAGCCTCATCATGGTCG
GTGTTCGGCAGGTCACCCCTCAGGTACGGTGCCAATATGAATGGCAAATA
TGAGACCGCAGGGTCTAAGCTTGGGGGCATAGACTGTCTGCAGAGAGTTA
GAATACAAGATCCTTGGTTCTGTGTACCAGGACCAAGAGGCCCAGACCCT
CCGTCTATGAGACAGGGCGTCTTGGTGTCAACTTGCGGTTTATGGCACCT
AGTGTGGGTTTGGGATTTATGGTTTGGGTTTGGGTTGGGGTTAGGGTTAG
GGAATGACTTGGCACCGCAACTTTGTGTGTATTCACAACTGGCTTTGTGC
AATGACCGCTTCATCATGCTGGCATTTGACTTCAACAGAAGAAACAGATT
GTCACTGGAAATTGGGGAGCACACAATTTCTGAGCTGTGCCCCGGCAAGA
GATAGCACATCACTTGCTTTGTTTGATGGTCTGGAAGGGGGTGTGATCCA
GCGATTTTCAGGGAAAATGATGCTGGCAGTGGCACTTCAGTGGTAGTGGG
CTCACCCTCGTAGATGGAACAAAAGTATGCTTAGCGGTCTGGGTTAGGGT
TAGGGTTAGTATGCTGACCCTAAGGTCCAACCTAACTGGGAATGCCATGT
AGTGGAAAGATGCTAACCCAAGGGCCTTGGCCTTGTGTGTGGTAGGCCCC
TGCTCTATGCACATCCAGGATTGATTGAAACAAGGGAGTGAGGTAGTGGG
ATTGGTTAGCATCGGTGGCTCAGATGAACTCATTTGTATATATATTGGTA
ATCCTGTGCACTAGGGCGTAGTATGCTCACAGACTGCCATAAATTGAACT
GCATCGGTGGTGCACCTACAGGTGAGTCTGACGGTTGGTTGATGGGACAG
ACAACGGGCTAGGTGCTGGGGACATCAACAGTAAATGCAGGCACATTATG
TGTTCTGCACATCAGAAAACAAGGTTTCCTTCCTGTCGAGCCACCTCACC
TTACCCCCCTCTTGTGCCTTGAATACTTTGGCGCCAGGGCGGGGTGAAGA
CCATGGAGATGGCATTTGTCCAGGGGAAGATGGTCCGCTATGTACACATC
CCTGACGATGTCGATGCCATCAAGACTCTGCATAAACATGTCAGTACAGT
ACACCACAGTACAGTACACCACAGC back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10003:345..3119-
>mRNA_D-mesarthrocarpus_Contig10003.1.2 ID=mRNA_D-mesarthrocarpus_Contig10003.1.2|Name=mRNA_D-mesarthrocarpus_Contig10003.1.2|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=501bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10003:345..3119- (Discosporangium mesarthrocarpum MT17_79) back to top