mRNA_D-mesarthrocarpus_Contig1027.6.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig1027.6.1
Unique NamemRNA_D-mesarthrocarpus_Contig1027.6.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig1027.6.1 vs. uniprot
Match: A0A6H5JXA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXA5_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 3.780e-7
Identity = 26/43 (60.47%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:   16 GSILAGFLGAEASFAVKCATDKDAWSFKEQRRYALTHMCFVSF 144
            G +LA FLG EA FA+KCATDK AW F  QRR+AL ++ F+S+
Sbjct:  451 GGLLATFLGQEARFALKCATDKGAWQFDRQRRHALAYLAFLSY 493
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BLAST of mRNA_D-mesarthrocarpus_Contig1027.6.1 vs. uniprot
Match: D7G9E1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9E1_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 4.560e-6
Identity = 26/42 (61.90%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:   16 GSILAGFLGAEASFAVKCATDKDAWSFKEQRRYALTHMCFVS 141
            G  LA FLG EA FA+KCATDK AW F  QRR+AL ++ F+S
Sbjct:  463 GGPLATFLGQEARFALKCATDKGAWQFDRQRRHALAYLAFLS 504
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1027.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JXA5_9PHAE3.780e-760.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G9E1_ECTSI4.560e-661.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig1027contigD-mesarthrocarpus_Contig1027:13112..14015 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G9E1
Preferred namePTAR1
PFAMsPPTA
Model size334
Max annot lvl2759|Eukaryota
KEGG koko:K14137
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005968,GO:0006464,GO:0006807,GO:0007275,GO:0007423,GO:0008150,GO:0008152,GO:0009987,GO:0018342,GO:0018344,GO:0019538,GO:0032501,GO:0032502,GO:0032991,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0048513,GO:0048731,GO:0048856,GO:0071704,GO:0097354,GO:1901564,GO:1902494,GO:1990234
Exons2
Evalue7.48e-07
EggNOG OGsCOG5536@1|root,KOG0529@2759|Eukaryota
Descriptionprotein geranylgeranylation
Cds size330
COG categoryO
BRITEko00000,ko01006
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789168.098864-CDS-D-mesarthrocarpus_Contig1027:13111..131921680789168.098864-CDS-D-mesarthrocarpus_Contig1027:13111..13192Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1027 13112..13192 +
1680789168.1150494-CDS-D-mesarthrocarpus_Contig1027:13764..140131680789168.1150494-CDS-D-mesarthrocarpus_Contig1027:13764..14013Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1027 13765..14013 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig1027.6.1prot_D-mesarthrocarpus_Contig1027.6.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig1027 13112..14013 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig1027.6.1

>prot_D-mesarthrocarpus_Contig1027.6.1 ID=prot_D-mesarthrocarpus_Contig1027.6.1|Name=mRNA_D-mesarthrocarpus_Contig1027.6.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=110bp
VGTARGSILAGFLGAEASFAVKCATDKDAWSFKEQRRYALTHMCFVSFVA
ACILSLLDTSTPHGAQNRQNCRNRQAPDEDERPHGRGQPQGGLAVGLGLG
QEQLGMAEQG
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mRNA from alignment at D-mesarthrocarpus_Contig1027:13112..14015+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig1027.6.1 ID=mRNA_D-mesarthrocarpus_Contig1027.6.1|Name=mRNA_D-mesarthrocarpus_Contig1027.6.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=904bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1027:13112..14015+ (Discosporangium mesarthrocarpum MT17_79)
GTAGGGACGGCACGTGGGTCGATTTTGGCCGGGTTCCTGGGAGCAGAGGC
GTCCTTCGCAGTGAAGTGTGCAACCGACAAGGTAATGAGGGAGAGGTTTG
ATGAGGGATTGGAATAGGCTCTGTGACATCTTGTTTGCATGTGCTGCTGC
TGCTGCTGCTGCTATGTGTTTTTTTTTTTTGTGTGTGTTATGCATCAACT
TGCAGGAGTGCTTTTTTCCGTGGCAGGCAGGTCTTGCTACGGAGCACCGG
TGCGCCGAAGGCAGCAGGCGTGTTTGATGTGCTGCGCTGTTGAACTAGAA
TAGGATGCTCGGCTGATTATTAGGGAATAACTCCTTGAAGAAAAACAAGG
TGGTAAGGATGCCTACACGGTTTTGGGGCAGCACTTGAATAACTTAATGT
TCTCCAACATTTGTCATGTACCAGCTCACGAGCTCTACAATGGTCAATGT
CTTTTCAAAGGCTTGGGTAGGCATGGATTGATGAGGATATACTGCTCCCT
GTGCCACCTACCCCCAGCCCTAACCCTGTCTCCCCATGCAGGCCAAGAAT
GGCACCAAGCACCAAGTGCTGTCCCCAGTGAACATGTATTCGAGCCTCCG
TGGAAGGCCTCACTCCCAAACCCGGTGGACCCCCTCCCATCCCCCCCATG
AAGGATGCCTGGAGCTTCAAGGAGCAGCGCCGCTATGCCCTCACCCACAT
GTGCTTCGTGTCCTTTGTGGCAGCCTGCATCCTTTCCCTCCTGGACACAT
CGACCCCTCACGGAGCCCAAAACCGCCAAAACTGCCGAAACCGTCAAGCT
CCTGATGAGGATGAGAGGCCCCATGGCCGTGGCCAACCCCAGGGCGGGTT
AGCCGTAGGCTTGGGGTTAGGGCAGGAACAGTTGGGAATGGCTGAGCAGG
GGAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1027:13112..14015+

>mRNA_D-mesarthrocarpus_Contig1027.6.1 ID=mRNA_D-mesarthrocarpus_Contig1027.6.1|Name=mRNA_D-mesarthrocarpus_Contig1027.6.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=330bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1027:13112..14015+ (Discosporangium mesarthrocarpum MT17_79)
GTAGGGACGGCACGTGGGTCGATTTTGGCCGGGTTCCTGGGAGCAGAGGC
GTCCTTCGCAGTGAAGTGTGCAACCGACAAGGATGCCTGGAGCTTCAAGG
AGCAGCGCCGCTATGCCCTCACCCACATGTGCTTCGTGTCCTTTGTGGCA
GCCTGCATCCTTTCCCTCCTGGACACATCGACCCCTCACGGAGCCCAAAA
CCGCCAAAACTGCCGAAACCGTCAAGCTCCTGATGAGGATGAGAGGCCCC
ATGGCCGTGGCCAACCCCAGGGCGGGTTAGCCGTAGGCTTGGGGTTAGGG
CAGGAACAGTTGGGAATGGCTGAGCAGGGG
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