mRNA_D-mesarthrocarpus_Contig10243.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10243.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig10243.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10243.2.1 vs. uniprot
Match: D8LP03_ECTSI (LETM1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP03_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 2.780e-37
Identity = 79/133 (59.40%), Postives = 101/133 (75.94%), Query Frame = 1 
Query:    1 IQSGREVARFGQELWDRINGQNPHEDEVGGGSSGGALLGSVEKPKQLPEDSAVMVEMRGVEECLQERAMQTLREVEALQANARAKEVAWDTSERRRAHRAIREKEARLANAYRTLTLHRIDMDMERMCFIIEQ 399
            IQSGREVARFGQELWDRINGQNP  DE GG ++GG+  G  +  K++PEDSAVM+E+R + E L+ R  Q  RE++AL+A ARA+E  W T ERR+A+R IR K+ +L NA + L LH ID+DMER+C+ IEQ
Sbjct:  247 IQSGREVARFGQELWDRINGQNP--DEEGGLAAGGSHGGGDKNIKEIPEDSAVMLELRAIGEELEGRQEQLRRELDALKAEARAQEATWKTLERRKANRRIRSKQEQLDNATKQLQLHNIDVDMERICYNIEQ 377
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BLAST of mRNA_D-mesarthrocarpus_Contig10243.2.1 vs. uniprot
Match: A0A6H5LQ87_9PHAE (LETM1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQ87_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 1.100e-36
Identity = 79/133 (59.40%), Postives = 100/133 (75.19%), Query Frame = 1 
Query:    1 IQSGREVARFGQELWDRINGQNPHEDEVGGGSSGGALLGSVEKPKQLPEDSAVMVEMRGVEECLQERAMQTLREVEALQANARAKEVAWDTSERRRAHRAIREKEARLANAYRTLTLHRIDMDMERMCFIIEQ 399
            IQSGREVARFGQELWDRINGQNP  DE GG ++GG+  G  +  K++PEDSAVM+E+R + E L+ R  Q  RE++AL+A ARA+E  W T ERR+A R IR K+ +L NA + L LH ID+DMER+C+ IEQ
Sbjct:  431 IQSGREVARFGQELWDRINGQNP--DEQGGLAAGGSHGGGHKNTKEIPEDSAVMLELRAIGEELEGRQEQLQRELDALKAEARAQEATWKTLERRKAIRRIRSKQEQLDNATKQLQLHNIDVDMERICYNIEQ 561
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BLAST of mRNA_D-mesarthrocarpus_Contig10243.2.1 vs. uniprot
Match: A0A835YNT1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNT1_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 5.280e-5
Identity = 22/28 (78.57%), Postives = 27/28 (96.43%), Query Frame = 1 
Query:    1 IQSGREVARFGQELWDRINGQNPHEDEV 84
            IQSGREVARFG+ELW+RINGQ+P E+E+
Sbjct:  207 IQSGREVARFGKELWERINGQDPVEEEL 234
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10243.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LP03_ECTSI2.780e-3759.40LETM1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5LQ87_9PHAE1.100e-3659.40LETM1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835YNT1_9STRA5.280e-578.57Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10243contigD-mesarthrocarpus_Contig10243:1096..3067 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LP03
PFAMsLETM1
Model size413
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue4.57e-38
EggNOG OGsKOG1043@1|root,KOG1043@2759|Eukaryota
Ec32 ortholog descriptionLETM1-like
Ec32 orthologEc-06_007100.1
Descriptioncalcium export from the mitochondrion
Cds size411
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789166.7368805-CDS-D-mesarthrocarpus_Contig10243:1095..12181680789166.7368805-CDS-D-mesarthrocarpus_Contig10243:1095..1218Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10243 1096..1218 -
1680789166.7566705-CDS-D-mesarthrocarpus_Contig10243:1855..19841680789166.7566705-CDS-D-mesarthrocarpus_Contig10243:1855..1984Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10243 1856..1984 -
1680789166.7699864-CDS-D-mesarthrocarpus_Contig10243:2241..23641680789166.7699864-CDS-D-mesarthrocarpus_Contig10243:2241..2364Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10243 2242..2364 -
1680789166.7835724-CDS-D-mesarthrocarpus_Contig10243:3031..30671680789166.7835724-CDS-D-mesarthrocarpus_Contig10243:3031..3067Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10243 3032..3067 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10243.2.1prot_D-mesarthrocarpus_Contig10243.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10243 1096..3067 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10243.2.1

>prot_D-mesarthrocarpus_Contig10243.2.1 ID=prot_D-mesarthrocarpus_Contig10243.2.1|Name=mRNA_D-mesarthrocarpus_Contig10243.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=137bp
IQSGREVARFGQELWDRINGQNPHEDEVGGGSSGGALLGSVEKPKQLPED
SAVMVEMRGVEECLQERAMQTLREVEALQANARAKEVAWDTSERRRAHRA
IREKEARLANAYRTLTLHRIDMDMERMCFIIEQAKK*
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mRNA from alignment at D-mesarthrocarpus_Contig10243:1096..3067-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10243.2.1 ID=mRNA_D-mesarthrocarpus_Contig10243.2.1|Name=mRNA_D-mesarthrocarpus_Contig10243.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1972bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10243:1096..3067- (Discosporangium mesarthrocarpum MT17_79)
ATCCAGTCGGGCAGGGAGGTTGCTCGCTTCGGCCAGGCAAGTTGGCCGCC
TTTTTTCTTTTCTCTTTCTTTTCTTTTCTTTTCCGCTTTGTGGGTAGCAG
GAAAGATTCGATTGTTTCGCGAGATGAACCTAAGCGAAGACGTCGACTGC
GGCTTGCGGCGCAGACACAAGGCGTGGCGGTTGGAGTGAAGCGGGCTGCG
CGAATTGAAGTGCCTCGCCCCTGTGAAAGGGCCTCCTGGGAGAGTTTCTG
GTGAATAGTAACGAGGGTTCTCGTAAGAAAGAGGGAAGAGCTCCTCTGAT
AGAGCTCTCCACATCCGAAGATGACACACTCCACCTCATGATAGAAGACT
GGGGTCAGATCCCCACCAGTATAAGCTGCAGTACGCTGGGCAGCCCTAAC
CCTACCCCACCTTATACTTGGGAGGGAGCCCACCGGAGATACTCCCGCCT
AGGAGAATGAGCAAGTGAGCAAACTACCAAACGCTCACCCCCTAACGTAA
CCTCTCGACGAGCCGAAACACTCCGCAGGTAAAAATGAAGGAATAAGAGA
ACCCCACCTGCAAGACTCTACGCGACCCAGACAAACAGATGAGGGGCGCG
CCATCGCCATGCCCATCTCTTCCATACTCCCGGGTCATGCACGCAACGCA
TAACCCCGCCGCGCCCTGACCCTGATCTGCACCCTAACCCTATGTGTGTG
CAGGAGCTGTGGGACCGCATCAATGGCCAGAACCCCCACGAAGATGAGGT
GGGGGGTGGTAGCAGTGGTGGAGCCCTGCTGGGGTCTGTCGAGAAGCCCA
AGCAGCTTCCTGAAGACTCGGCAGTGGTGAGCGAGTGAGCCCTAACCTTA
GGGTTAGGGTTGGGTATGCCTCACCCCCCCTACCCTGTTGCCACACGTAC
ACACACACACACACACACACACACACACACACACACACCAAGTGCCAATG
GGTCACCCTGCTCCTCTTGAAACTCGCGCTGAGTAAGCATACAGCAGATC
TAGAGGATGGTCTTTCCTGTGGCTTCATTTTCTCCTCTCTTCCTTTTCCT
TTTCATTTCTGCTTGAACCCTGAAAATTTGCAGATGGTGGAGATGAGGGG
GGTCGAGGAATGCCTCCAGGAGAGGGCAATGCAAACCCTCAGGGAAGTGG
AGGCCCTGCAGGCCAATGCCCGCGCCAAGGAGGTTGCCTGGGACACCTCT
GAGCGGCGACGGGTGAGTGTGTGTGCAAGCAGAGCGGAGCTTCCAGTCCC
GCCCCCAACCCTGTGCACAAATCTCCCCCTGTCTTGCTGGGCATGTGCCA
GGATGATTATTTCCAGGGGTGAATCACAAAAAAGAAAACGGTCAATTTTG
AGTCAGATCAGTTCATGATCAGGGTGATACACACACACAGTATTTCCTGG
TGTTACTAGTATCTTAAATGGTAGGCTGTGCATCTACTTTCAAGCAAGGT
AGTTGTTTTGTGTCGCTTTTCTGGCTTTTCTTTTCTCTCCTTTCCTTCTC
GTTTTCCTTTCCGCCCCTTATTTTTTTTGACCGCGTGTTTGGGGTGATTG
GAGTAACGTGTGATAGTATTAATCATACCTACTAATAGTGGTAATAATTA
GAGGTGTTTACCGACATTTTGACCTCGTACAAGGTGACCTCATGTAGAAA
AAACCCGAGTCAGGCAATATCAGGTCTGTCCCAAAACAGGTCATGTCAGC
TCAGGGAAATTGTAGTGAAGCATCCCTAGTCTTCTCCTTATTTATTTATT
CATTTATTCATTTATTCATTTGTTTTGCTGCTCACCACTGCTGTCCACCT
CCCCAAGTAATATGAGGCCCCGATTTTTTTTTTTCCGTTGTTCGTGCAGG
CGCACCGAGCCATAAGGGAGAAGGAGGCACGGCTGGCCAACGCTTACCGG
ACCCTGACGCTTCATCGCATTGACATGGACATGGAGAGGATGTGCTTCAT
CATCGAGCAGGCAAAAAAATAA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10243:1096..3067-

>mRNA_D-mesarthrocarpus_Contig10243.2.1 ID=mRNA_D-mesarthrocarpus_Contig10243.2.1|Name=mRNA_D-mesarthrocarpus_Contig10243.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=411bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10243:1096..3067- (Discosporangium mesarthrocarpum MT17_79)
ATCCAGTCGGGCAGGGAGGTTGCTCGCTTCGGCCAGGAGCTGTGGGACCG
CATCAATGGCCAGAACCCCCACGAAGATGAGGTGGGGGGTGGTAGCAGTG
GTGGAGCCCTGCTGGGGTCTGTCGAGAAGCCCAAGCAGCTTCCTGAAGAC
TCGGCAGTGATGGTGGAGATGAGGGGGGTCGAGGAATGCCTCCAGGAGAG
GGCAATGCAAACCCTCAGGGAAGTGGAGGCCCTGCAGGCCAATGCCCGCG
CCAAGGAGGTTGCCTGGGACACCTCTGAGCGGCGACGGGCGCACCGAGCC
ATAAGGGAGAAGGAGGCACGGCTGGCCAACGCTTACCGGACCCTGACGCT
TCATCGCATTGACATGGACATGGAGAGGATGTGCTTCATCATCGAGCAGG
CAAAAAAATAA
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