mRNA_D-mesarthrocarpus_Contig10224.4.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10224.4.1
Unique NamemRNA_D-mesarthrocarpus_Contig10224.4.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10224.4.1 vs. uniprot
Match: D7G470_ECTSI (HDAC_interact domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G470_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 1.430e-14
Identity = 46/94 (48.94%), Postives = 59/94 (62.77%), Query Frame = 1 
Query:   91 TPSYVRVPRDWPAPPCSSRTVFEARVLNDNFVGIGGGGT---GFRHAARNPAEETLFRLEDERHALDAQLDGVAAVAARLEPLQEELWALEAAA 363
            TPSY  +P+D+    CS R+  E  VLND +V +  G      F+H  RNP EE LF++EDER  LD  +DGVA+  ARLEP +EE+ AL A A
Sbjct:  528 TPSYRELPQDYQVTSCSGRSPNEDAVLNDTWVSVPVGSEDSGSFKHMRRNPNEEQLFKVEDERFELDMLIDGVASAIARLEPAEEEIEALRATA 621
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BLAST of mRNA_D-mesarthrocarpus_Contig10224.4.1 vs. uniprot
Match: A0A7S4IGZ1_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IGZ1_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.750e-14
Identity = 46/92 (50.00%), Postives = 57/92 (61.96%), Query Frame = 1 
Query:   85 RVTPSYVRVPRDWPAPPCSSRTVFEARVLNDNFVGIGGGGTG---FRHAARNPAEETLFRLEDERHALDAQLDGVAAVAARLEPLQEELWAL 351
            R +PSY  +PRD+PAPPCS R+V E  VLND +V +  G      FRH  +N  EE LFR EDER  +D  +D  AA   RLEP+ EE+  L
Sbjct:  226 RCSPSYRALPRDYPAPPCSERSVVETAVLNDVWVSLPVGSEESYTFRHMRKNQYEEMLFRTEDERFEIDMVIDSNAATLRRLEPIAEEIEVL 317
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BLAST of mRNA_D-mesarthrocarpus_Contig10224.4.1 vs. uniprot
Match: K0TF38_THAOC (HDAC_interact domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TF38_THAOC)

HSP 1 Score: 77.0 bits (188), Expect = 1.590e-11
Identity = 43/92 (46.74%), Postives = 55/92 (59.78%), Query Frame = 1 
Query:   85 RVTPSYVRVPRDWPAPPCSSRTVFEARVLNDNFVGIGGGGTG---FRHAARNPAEETLFRLEDERHALDAQLDGVAAVAARLEPLQEELWAL 351
            + +PSY  +PRD+P PPCS R+V E +VLND +V +  G      FRH  +N  EETLFRLED R  +D  LD  A    RL  + +EL  L
Sbjct:  787 KCSPSYRALPRDYPDPPCSERSVAETKVLNDIWVSLPVGSEESYTFRHMRKNQFEETLFRLEDMRFEIDMCLDSNATTLQRLTMIYDELQFL 878
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BLAST of mRNA_D-mesarthrocarpus_Contig10224.4.1 vs. uniprot
Match: A0A067JP30_JATCU (HDAC_interact domain-containing protein n=4 Tax=Jatropha curcas TaxID=180498 RepID=A0A067JP30_JATCU)

HSP 1 Score: 70.9 bits (172), Expect = 1.560e-9
Identity = 37/88 (42.05%), Postives = 53/88 (60.23%), Query Frame = 1 
Query:   85 RVTPSYVRVPRDWPAPPCSSRTVFEARVLNDNFVGIGGGGT--GFRHAARNPAEETLFRLEDERHALDAQLDGVAAVAARLEPLQEEL 342
            R +PSY  +P+++P P  S RTV  A VLND++V +  G     F+H  +N  EE+LFR ED+R  LD  L+ V     R+E L E++
Sbjct:  484 RCSPSYRLLPKNYPIPSASQRTVLGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLEKI 571
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BLAST of mRNA_D-mesarthrocarpus_Contig10224.4.1 vs. uniprot
Match: W9R6W8_9ROSA (Paired amphipathic helix protein Sin3-like 4 n=3 Tax=Morus notabilis TaxID=981085 RepID=W9R6W8_9ROSA)

HSP 1 Score: 70.1 bits (170), Expect = 2.770e-9
Identity = 37/88 (42.05%), Postives = 52/88 (59.09%), Query Frame = 1 
Query:   85 RVTPSYVRVPRDWPAPPCSSRTVFEARVLNDNFVGIGGGGT--GFRHAARNPAEETLFRLEDERHALDAQLDGVAAVAARLEPLQEEL 342
            R TPSY  +P+++P P  S RTV    VLND++V +  G     F+H  +N  EE+LFR ED+R  LD  L+ V     R+E L E++
Sbjct:  508 RCTPSYRLLPKNYPIPSASQRTVLGDEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLEKI 595
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BLAST of mRNA_D-mesarthrocarpus_Contig10224.4.1 vs. uniprot
Match: A0A4P1RKE5_LUPAN (HDAC_interact domain-containing protein n=3 Tax=Lupinus angustifolius TaxID=3871 RepID=A0A4P1RKE5_LUPAN)

HSP 1 Score: 69.7 bits (169), Expect = 3.650e-9
Identity = 37/86 (43.02%), Postives = 51/86 (59.30%), Query Frame = 1 
Query:   91 TPSYVRVPRDWPAPPCSSRTVFEARVLNDNFVGIGGGGT--GFRHAARNPAEETLFRLEDERHALDAQLDGVAAVAARLEPLQEEL 342
            +PSY R+P D+P P  S R+   A+VLND++V +  G     F+H  RN  EE LFR ED+R  LD  L+ V++ A R E L   +
Sbjct:  476 SPSYRRLPADYPFPSVSHRSELAAQVLNDHWVSVTSGSEDYSFKHMRRNQYEENLFRCEDDRFELDMLLESVSSAAKRAEELYNNI 561
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BLAST of mRNA_D-mesarthrocarpus_Contig10224.4.1 vs. uniprot
Match: A0A022R394_ERYGU (HDAC_interact domain-containing protein (Fragment) n=3 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022R394_ERYGU)

HSP 1 Score: 68.9 bits (167), Expect = 6.450e-9
Identity = 36/82 (43.90%), Postives = 50/82 (60.98%), Query Frame = 1 
Query:   85 RVTPSYVRVPRDWPAPPCSSRTVFEARVLNDNFVGIGGGGT--GFRHAARNPAEETLFRLEDERHALDAQLDGVAAVAARLE 324
            R +PSY R+P D+P P  S R+   + VLND++V +  G     F+H  RN  EE+LFR ED+R  LD  L+ V A A ++E
Sbjct:  489 RCSPSYRRLPEDYPIPLASQRSELGSHVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVTATAKKVE 570
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BLAST of mRNA_D-mesarthrocarpus_Contig10224.4.1 vs. uniprot
Match: A0A251RUQ4_HELAN (Putative histone deacetylase interacting domain, Sin3 n=2 Tax=Helianthus annuus TaxID=4232 RepID=A0A251RUQ4_HELAN)

HSP 1 Score: 68.6 bits (166), Expect = 8.440e-9
Identity = 35/86 (40.70%), Postives = 52/86 (60.47%), Query Frame = 1 
Query:   91 TPSYVRVPRDWPAPPCSSRTVFEARVLNDNFVGIGGGGT--GFRHAARNPAEETLFRLEDERHALDAQLDGVAAVAARLEPLQEEL 342
            TPSY  +P+++P P  S RT+  A VLND++V +  G     F+H  +N  EE+LFR ED+R  LD  L+ V     R+E L +++
Sbjct:  558 TPSYRLLPKNYPIPSVSHRTIIGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTRRVEELLDKI 643
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BLAST of mRNA_D-mesarthrocarpus_Contig10224.4.1 vs. uniprot
Match: A0A830BUA6_9LAMI (Paired amphipathic helix protein sin3-like 4 n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830BUA6_9LAMI)

HSP 1 Score: 67.0 bits (162), Expect = 2.680e-8
Identity = 35/86 (40.70%), Postives = 51/86 (59.30%), Query Frame = 1 
Query:   91 TPSYVRVPRDWPAPPCSSRTVFEARVLNDNFVGIGGGGT--GFRHAARNPAEETLFRLEDERHALDAQLDGVAAVAARLEPLQEEL 342
            TPSY R+P ++P P  S +T   A+VLND++V +  G     F+H  +N  EE+LFR ED+R  LD  L+ V A    +E L + +
Sbjct:  446 TPSYRRLPANYPIPSASCKTEIGAQVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNATVKHVEELLDRM 531
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BLAST of mRNA_D-mesarthrocarpus_Contig10224.4.1 vs. uniprot
Match: SNL5_ARATH (Paired amphipathic helix protein Sin3-like 5 n=10 Tax=Arabidopsis thaliana TaxID=3702 RepID=SNL5_ARATH)

HSP 1 Score: 65.1 bits (157), Expect = 1.080e-7
Identity = 36/86 (41.86%), Postives = 51/86 (59.30%), Query Frame = 1 
Query:   91 TPSYVRVPRDWPAPPCSSRTVFEARVLNDNFVGIGGGGT--GFRHAARNPAEETLFRLEDERHALDAQLDGVAAVAARLEPLQEEL 342
            TPSY R+P D+P    S R     +VLND++V +  G     F+H  +N  EE+LFR ED+R  LD  L+ V+A   R+E L E++
Sbjct:  320 TPSYRRLPDDYPIQIPSYRNSLGEKVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVSAAIKRVESLLEKI 405
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10224.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7G470_ECTSI1.430e-1448.94HDAC_interact domain-containing protein n=2 Tax=Ec... [more]
A0A7S4IGZ1_9STRA1.750e-1450.00Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
K0TF38_THAOC1.590e-1146.74HDAC_interact domain-containing protein n=1 Tax=Th... [more]
A0A067JP30_JATCU1.560e-942.05HDAC_interact domain-containing protein n=4 Tax=Ja... [more]
W9R6W8_9ROSA2.770e-942.05Paired amphipathic helix protein Sin3-like 4 n=3 T... [more]
A0A4P1RKE5_LUPAN3.650e-943.02HDAC_interact domain-containing protein n=3 Tax=Lu... [more]
A0A022R394_ERYGU6.450e-943.90HDAC_interact domain-containing protein (Fragment)... [more]
A0A251RUQ4_HELAN8.440e-940.70Putative histone deacetylase interacting domain, S... [more]
A0A830BUA6_9LAMI2.680e-840.70Paired amphipathic helix protein sin3-like 4 n=1 T... [more]
SNL5_ARATH1.080e-741.86Paired amphipathic helix protein Sin3-like 5 n=10 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10224contigD-mesarthrocarpus_Contig10224:2949..4060 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G470
PFAMsPAH,Sin3_corepress,Sin3a_C
Model size1112
Max annot lvl2759|Eukaryota
KEGG koko:K11644
KEGG Pathwayko04139,ko04919,ko05016,ko05202,map04139,map04919,map05016,map05202
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.48e-23
EggNOG OGsCOG5602@1|root,KOG4204@2759|Eukaryota
Descriptionhistone deacetylation
Cds size1110
COG categoryB
BRITEko00000,ko00001,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789165.7788534-CDS-D-mesarthrocarpus_Contig10224:2950..40601680789165.7788534-CDS-D-mesarthrocarpus_Contig10224:2950..4060Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10224 2951..4060 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10224.4.1prot_D-mesarthrocarpus_Contig10224.4.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10224 2951..4060 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10224.4.1

>prot_D-mesarthrocarpus_Contig10224.4.1 ID=prot_D-mesarthrocarpus_Contig10224.4.1|Name=mRNA_D-mesarthrocarpus_Contig10224.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=370bp
LERSTVQALASDLAHGVSREGLLARAPPRVTPSYVRVPRDWPAPPCSSRT
VFEARVLNDNFVGIGGGGTGFRHAARNPAEETLFRLEDERHALDAQLDGV
AAVAARLEPLQEELWALEAAATFNRPGGRWGDGDGPRGRGRSESRGDPWK
ETGGKPQALTDVGGVDGFPGTGPSSGSGGPGEESAALWGRRDGHDKEGGE
GGLGGEAGGLSAGEGGAGVRVRVGAGDAEGARVMANFPFLYELDKRSLTQ
RHLGIIRGMYPASQGRSVVRQLRENPVDALPMVLKHLRRRQRDLSRARSE
QASKWRSTLTHGALQRALDQRSSRFRLEDRSSIATRPLLLEIKQVKGGGG
GRGRAKAKAGAFPKTVGEVA
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mRNA from alignment at D-mesarthrocarpus_Contig10224:2949..4060-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10224.4.1 ID=mRNA_D-mesarthrocarpus_Contig10224.4.1|Name=mRNA_D-mesarthrocarpus_Contig10224.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1112bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10224:2949..4060- (Discosporangium mesarthrocarpum MT17_79)
CTGGAGCGCTCCACGGTCCAGGCGCTGGCGTCAGACCTGGCACACGGGGT
CAGCCGCGAGGGCCTCCTCGCCCGTGCGCCCCCCCGGGTGACGCCATCCT
ATGTCCGGGTGCCCCGAGACTGGCCGGCCCCGCCCTGTAGCAGTCGGACG
GTGTTTGAGGCCCGGGTGCTGAACGATAACTTCGTCGGCATTGGTGGGGG
GGGGACAGGCTTCCGGCATGCTGCCCGCAACCCCGCCGAGGAGACGCTGT
TCCGGCTGGAGGACGAGCGGCACGCCCTAGACGCACAGCTCGATGGTGTG
GCCGCTGTCGCCGCCCGGCTGGAGCCGCTCCAGGAGGAGCTCTGGGCGCT
CGAGGCGGCAGCAACGTTCAACCGACCTGGGGGCAGGTGGGGGGACGGGG
ATGGGCCCAGGGGCAGGGGCAGGAGCGAGAGCAGGGGCGACCCGTGGAAG
GAGACAGGGGGGAAACCCCAGGCCCTGACTGATGTGGGGGGCGTGGACGG
CTTCCCTGGGACTGGTCCCAGCAGTGGAAGCGGTGGCCCCGGGGAGGAAT
CAGCGGCACTGTGGGGCAGGAGGGACGGGCATGACAAAGAGGGTGGAGAA
GGGGGGTTGGGAGGGGAGGCAGGAGGTCTTTCAGCGGGTGAAGGTGGGGC
TGGGGTTAGGGTTAGGGTTGGTGCTGGCGATGCAGAGGGGGCAAGGGTGA
TGGCAAATTTCCCGTTCCTCTACGAGCTGGACAAGAGATCGCTCACCCAG
CGGCACCTGGGCATAATCCGGGGGATGTACCCAGCGAGCCAGGGGAGGTC
GGTCGTAAGGCAGCTGAGGGAGAACCCCGTGGATGCTTTGCCGATGGTAC
TTAAGCACCTGCGCCGGAGGCAGAGGGACCTGTCCAGGGCCCGGTCAGAG
CAGGCCTCAAAGTGGAGGTCAACCCTAACCCATGGGGCCCTGCAGAGGGC
ACTGGATCAGCGGTCCTCACGCTTCCGCCTCGAGGACAGAAGCAGCATCG
CCACTCGCCCCCTCCTGCTGGAGATAAAGCAGGTGAAGGGGGGGGGAGGG
GGCAGGGGCAGGGCCAAGGCCAAGGCTGGCGCCTTCCCCAAGACTGTTGG
AGAAGTAGCAGA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10224:2949..4060-

>mRNA_D-mesarthrocarpus_Contig10224.4.1 ID=mRNA_D-mesarthrocarpus_Contig10224.4.1|Name=mRNA_D-mesarthrocarpus_Contig10224.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=1110bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10224:2949..4060- (Discosporangium mesarthrocarpum MT17_79)
CTGGAGCGCTCCACGGTCCAGGCGCTGGCGTCAGACCTGGCACACGGGGT
CAGCCGCGAGGGCCTCCTCGCCCGTGCGCCCCCCCGGGTGACGCCATCCT
ATGTCCGGGTGCCCCGAGACTGGCCGGCCCCGCCCTGTAGCAGTCGGACG
GTGTTTGAGGCCCGGGTGCTGAACGATAACTTCGTCGGCATTGGTGGGGG
GGGGACAGGCTTCCGGCATGCTGCCCGCAACCCCGCCGAGGAGACGCTGT
TCCGGCTGGAGGACGAGCGGCACGCCCTAGACGCACAGCTCGATGGTGTG
GCCGCTGTCGCCGCCCGGCTGGAGCCGCTCCAGGAGGAGCTCTGGGCGCT
CGAGGCGGCAGCAACGTTCAACCGACCTGGGGGCAGGTGGGGGGACGGGG
ATGGGCCCAGGGGCAGGGGCAGGAGCGAGAGCAGGGGCGACCCGTGGAAG
GAGACAGGGGGGAAACCCCAGGCCCTGACTGATGTGGGGGGCGTGGACGG
CTTCCCTGGGACTGGTCCCAGCAGTGGAAGCGGTGGCCCCGGGGAGGAAT
CAGCGGCACTGTGGGGCAGGAGGGACGGGCATGACAAAGAGGGTGGAGAA
GGGGGGTTGGGAGGGGAGGCAGGAGGTCTTTCAGCGGGTGAAGGTGGGGC
TGGGGTTAGGGTTAGGGTTGGTGCTGGCGATGCAGAGGGGGCAAGGGTGA
TGGCAAATTTCCCGTTCCTCTACGAGCTGGACAAGAGATCGCTCACCCAG
CGGCACCTGGGCATAATCCGGGGGATGTACCCAGCGAGCCAGGGGAGGTC
GGTCGTAAGGCAGCTGAGGGAGAACCCCGTGGATGCTTTGCCGATGGTAC
TTAAGCACCTGCGCCGGAGGCAGAGGGACCTGTCCAGGGCCCGGTCAGAG
CAGGCCTCAAAGTGGAGGTCAACCCTAACCCATGGGGCCCTGCAGAGGGC
ACTGGATCAGCGGTCCTCACGCTTCCGCCTCGAGGACAGAAGCAGCATCG
CCACTCGCCCCCTCCTGCTGGAGATAAAGCAGGTGAAGGGGGGGGGAGGG
GGCAGGGGCAGGGCCAAGGCCAAGGCTGGCGCCTTCCCCAAGACTGTTGG
AGAAGTAGCA
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