mRNA_D-mesarthrocarpus_Contig10214.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10214.1.1 vs. uniprot
Match: D7G2Z7_ECTSI (ABC transmembrane transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Z7_ECTSI) HSP 1 Score: 125 bits (313), Expect = 1.660e-27 Identity = 58/97 (59.79%), Postives = 76/97 (78.35%), Query Frame = 3 Query: 393 MLAVMGPSGAGKTSLLNCLSLRNTRFRGYVLHSGEPPDLDSLAVNTVFVQQEELFIGQVTPREHLTFNATLRASKPMSKNQRREIVNKSLEEMGLGE 683
MLA+MGPSGAGKTSLLNCLSLRN + G VLH+G+PPD+D + + T FVQQE+LFI +TPREHL F+A +R S+ +S Q+ + V +LE +GLG+
Sbjct: 1 MLAIMGPSGAGKTSLLNCLSLRNQSYSGTVLHNGKPPDMDMVGITTAFVQQEDLFIPTLTPREHLRFHANMRMSRTLSPEQKMQAVETALEGLGLGK 97
BLAST of mRNA_D-mesarthrocarpus_Contig10214.1.1 vs. uniprot
Match: UPI000F67608E (protein white-like n=1 Tax=Penaeus vannamei TaxID=6689 RepID=UPI000F67608E) HSP 1 Score: 106 bits (264), Expect = 3.910e-22 Identity = 56/117 (47.86%), Postives = 80/117 (68.38%), Query Frame = 3 Query: 339 SESTSILDNVSGICELGQMLAVMGPSGAGKTSLLNCLSLRNTRFR--GYVLHSGEPPDLDSLAVNTVFVQQEELFIGQVTPREHLTFNATLRASKPMSKNQRREIVNKSLEEMGLGE 683
S IL NVSG+CE GQ+LA+MG SGAGKT+LLN L+ R ++ R G + +G P D+ ++A + +VQQE+LF G T RE L FNA LR K +S+ +R + V + ++E+GLG+
Sbjct: 57 SPEVHILKNVSGLCEGGQLLAIMGASGAGKTTLLNVLTFRTSKLRITGDIYINGRPVDMRTIAGVSAYVQQEDLFTGVFTVREQLNFNAQLRIGKEVSQKERLQRVEEVIKELGLGK 173
BLAST of mRNA_D-mesarthrocarpus_Contig10214.1.1 vs. uniprot
Match: C0LI98_PENVA (ATP binding cassette transmembrane transporter n=7 Tax=Penaeus TaxID=133894 RepID=C0LI98_PENVA) HSP 1 Score: 106 bits (264), Expect = 4.860e-21 Identity = 56/117 (47.86%), Postives = 80/117 (68.38%), Query Frame = 3 Query: 339 SESTSILDNVSGICELGQMLAVMGPSGAGKTSLLNCLSLRNTRFR--GYVLHSGEPPDLDSLAVNTVFVQQEELFIGQVTPREHLTFNATLRASKPMSKNQRREIVNKSLEEMGLGE 683
S IL NVSG+CE GQ+LA+MG SGAGKT+LLN L+ R ++ R G + +G P D+ ++A + +VQQE+LF G T RE L FNA LR K +S+ +R + V + ++E+GLG+
Sbjct: 57 SPEVHILKNVSGLCEGGQLLAIMGASGAGKTTLLNVLTFRTSKLRITGDIYINGRPVDMRTIAGVSAYVQQEDLFTGVFTVREQLNFNAQLRIGKEVSQKERLQRVEEVIKELGLGK 173
BLAST of mRNA_D-mesarthrocarpus_Contig10214.1.1 vs. uniprot
Match: A0A7S3Y2H4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2H4_HETAK) HSP 1 Score: 97.8 bits (242), Expect = 8.320e-20 Identity = 54/113 (47.79%), Postives = 75/113 (66.37%), Query Frame = 3 Query: 351 SILDNVSGICELGQMLAVMGPSGAGKTSLLNCLSLRNTRFRGYVLHSGEPPDLDSLAVNTVFVQQEELFIGQVTPREHLTFNATLRASKPMSKNQRREIVNKSLEEMGLGESV 689
+IL+ V G + GQM+A+MG SG GKTSLLNCLS RN R++G V +GEP +A + FV QE+LF+ +T REHLTF+ATLR + M ++R V+K + + L + V
Sbjct: 53 TILNGVVGQAKPGQMVAIMGASGTGKTSLLNCLSQRNRRYQGRVCANGEPTS-GRIAAVSGFVHQEDLFLPTLTVREHLTFHATLRLPRTMPAEEKRREVDKIVAALSLTKCV 164
BLAST of mRNA_D-mesarthrocarpus_Contig10214.1.1 vs. uniprot
Match: A0A1D2MZ56_ORCCI (Protein white n=1 Tax=Orchesella cincta TaxID=48709 RepID=A0A1D2MZ56_ORCCI) HSP 1 Score: 101 bits (251), Expect = 2.330e-19 Identity = 55/115 (47.83%), Postives = 74/115 (64.35%), Query Frame = 3 Query: 342 ESTSILDNVSGICELGQMLAVMGPSGAGKTSLLNCLSLRNT---RFRGYVLHSGEPPDLDSLAVNTVFVQQEELFIGQVTPREHLTFNATLRASKPMSKNQRREIVNKSLEEMGL 677
E IL NVSGI G++LA+MG SGAGKTSLLN L+ RNT G + +G P D L + + ++QQ+++FIG +TPREHL F A LR K S +R V++ ++EMGL
Sbjct: 87 EPKQILKNVSGIARAGEILAIMGASGAGKTSLLNILTFRNTSSLNISGTRMVNGVPIDAVQLTLISAYIQQDDIFIGTLTPREHLRFQALLRMDKEFSYKERMRKVDEVIKEMGL 201
BLAST of mRNA_D-mesarthrocarpus_Contig10214.1.1 vs. uniprot
Match: A0A4D9D8A6_9STRA (ABC transporter domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D8A6_9STRA) HSP 1 Score: 100 bits (250), Expect = 3.220e-19 Identity = 61/141 (43.26%), Postives = 86/141 (60.99%), Query Frame = 3 Query: 258 LSLSYRVSLSVESKARRGLNQGQYFGVSESTSILDNVSGICELGQMLAVMGPSGAGKTSLLNCLSLRNTRFRGYVLHSGEPPDLDSLAVNTVFVQQEELFIGQVTPREHLTFNATLRASKPMSKNQRREIVNKSLEEMGLG 680
L L++ SLSV++ R G Y S +IL NV+G + GQM+AVMG SGAGK++ L+C+SLRN +F G V +G+P D + T FV QE+LFI +T REHLTF+A +R + + +R E V L E+ +
Sbjct: 94 LELAWDFSLSVKATKREAKLSGSY-----SKNILSNVAGSVKSGQMMAVMGSSGAGKSTFLDCVSLRNQQFSGNVYINGKPAD-EKYYFMTGFVYQEDLFIPTMTVREHLTFHAMVRMNSDIPVEKRLERVEDVLMEVAMS 228
BLAST of mRNA_D-mesarthrocarpus_Contig10214.1.1 vs. uniprot
Match: UPI001E6757BD (protein white-like n=1 Tax=Procambarus clarkii TaxID=6728 RepID=UPI001E6757BD) HSP 1 Score: 100 bits (248), Expect = 5.400e-19 Identity = 54/117 (46.15%), Postives = 79/117 (67.52%), Query Frame = 3 Query: 339 SESTSILDNVSGICELGQMLAVMGPSGAGKTSLLNCLSLRNTRFR--GYVLHSGEPPDLDSLAVNTVFVQQEELFIGQVTPREHLTFNATLRASKPMSKNQRREIVNKSLEEMGLGE 683
S T IL +VSG+CE GQ+LA+MG SGAGKT+LLN L+ R T+ G + +G+P D+ ++A + +VQQE+LF G T +E L FNA LR K +S+ R + V + ++E+GL +
Sbjct: 57 SPKTHILKDVSGMCEGGQLLAIMGSSGAGKTTLLNVLTFRTTKLEVSGDIHINGKPVDMRTIAGVSAYVQQEDLFTGVFTVKEQLHFNAQLRIGKEVSQKDRLQRVKEVMKELGLNK 173
BLAST of mRNA_D-mesarthrocarpus_Contig10214.1.1 vs. uniprot
Match: A0A5B7F5D0_PORTR (Protein white n=1 Tax=Portunus trituberculatus TaxID=210409 RepID=A0A5B7F5D0_PORTR) HSP 1 Score: 95.9 bits (237), Expect = 9.430e-19 Identity = 54/123 (43.90%), Postives = 75/123 (60.98%), Query Frame = 3 Query: 321 GQYFGVSESTSILDNVSGICELGQMLAVMGPSGAGKTSLLNCLSLRNTRFR--GYVLHSGEPPDLDSLAVNTVFVQQEELFIGQVTPREHLTFNATLRASKPMSKNQRREIVNKSLEEMGLGE 683
G F IL +VSG+CE GQMLA+MG SGAGKT+LLN L+ R + G + +G P D+ ++A + +VQQE+LF G T E L FNA LR K +S +R+ V + + E+GL +
Sbjct: 32 GNMFKKKPKVHILKDVSGVCEGGQMLAIMGASGAGKTTLLNVLTYRTRKLEITGDIHINGRPVDMRTIAGVSAYVQQEDLFTGVFTVEEQLHFNAQLRIGKEVSDAERKRRVAEVMTELGLNK 154
BLAST of mRNA_D-mesarthrocarpus_Contig10214.1.1 vs. uniprot
Match: A0A226F3D6_FOLCA (Protein white n=3 Tax=Folsomia candida TaxID=158441 RepID=A0A226F3D6_FOLCA) HSP 1 Score: 98.6 bits (244), Expect = 1.670e-18 Identity = 55/118 (46.61%), Postives = 74/118 (62.71%), Query Frame = 3 Query: 333 GVSESTSILDNVSGICELGQMLAVMGPSGAGKTSLLNCLSLRNT---RFRGYVLHSGEPPDLDSLAVNTVFVQQEELFIGQVTPREHLTFNATLRASKPMSKNQRREIVNKSLEEMGL 677
G E IL NV+GI G++LA+MG SGAGKT+LLN L+ RNT G L +G P D LA + ++QQ ++FIG +TPREHL F ATLR + + +R E V + + +MGL
Sbjct: 64 GNVEQKHILKNVTGIARPGELLAIMGASGAGKTTLLNVLTCRNTGKLNLSGERLINGTPVDRTMLASISAYIQQSDIFIGTLTPREHLQFQATLRMDQAIPYKKRMERVEEVIRQMGL 181
BLAST of mRNA_D-mesarthrocarpus_Contig10214.1.1 vs. uniprot
Match: T1KD82_TETUR (ABC transporter domain-containing protein n=2 Tax=Tetranychus urticae TaxID=32264 RepID=T1KD82_TETUR) HSP 1 Score: 98.6 bits (244), Expect = 1.840e-18 Identity = 60/137 (43.80%), Postives = 83/137 (60.58%), Query Frame = 3 Query: 279 SLSVESKARRGLNQGQYFGVS-ESTSILDNVSGICELGQMLAVMGPSGAGKTSLLNCLS---LRNTRFRGYVLHSGEPPDLDSLAVNTVFVQQEELFIGQVTPREHLTFNATLRASKPMSKNQRREIVNKSLEEMGL 677
+L+V SK GL FG ES I+ N++G + G +LA++G SGAGKT+LLN L+ L + G VL + EP + LA + +VQQ++LF G +T REHL F LR S P++ QRR +NK LE +GL
Sbjct: 62 NLNVYSKGSNGLVS--CFGKKKESVHIIKNITGHVKPGNLLAILGASGAGKTTLLNVLTGQNLNSLTIEGKVLLNNEPTTIQKLASCSAYVQQDDLFFGVLTVREHLQFQLELRTSVPLTPEQRRAKINKLLETLGL 196 The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10214.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig10214.1.1 >prot_D-mesarthrocarpus_Contig10214.1.1 ID=prot_D-mesarthrocarpus_Contig10214.1.1|Name=mRNA_D-mesarthrocarpus_Contig10214.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=231bp MVNKYGEVDSEEEQYPRFHNLVPFFDQVLMACLCLNIVLPMPAELVESKVback to top mRNA from alignment at D-mesarthrocarpus_Contig10214:1491..4453+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-mesarthrocarpus_Contig10214.1.1 ID=mRNA_D-mesarthrocarpus_Contig10214.1.1|Name=mRNA_D-mesarthrocarpus_Contig10214.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2963bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10214:1491..4453+ (Discosporangium mesarthrocarpum MT17_79)back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10214:1491..4453+ >mRNA_D-mesarthrocarpus_Contig10214.1.1 ID=mRNA_D-mesarthrocarpus_Contig10214.1.1|Name=mRNA_D-mesarthrocarpus_Contig10214.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=693bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10214:1491..4453+ (Discosporangium mesarthrocarpum MT17_79)back to top |