prot_D-mesarthrocarpus_Contig10210.1.1 (polypeptide) Discosporangium mesarthrocarpum MT17_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_D-mesarthrocarpus_Contig10210.1.1
Unique Nameprot_D-mesarthrocarpus_Contig10210.1.1
Typepolypeptide
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Sequence length81
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10210.1.1 vs. uniprot
Match: D7FP28_ECTSI (DNA-directed RNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP28_ECTSI)

HSP 1 Score: 155 bits (393), Expect = 7.090e-48
Identity = 72/81 (88.89%), Postives = 76/81 (93.83%), Query Frame = 0
Query:    1 VTPFQCRLRDCTYSAPLYVNVRYTRAHQIVNRNNICIGRIPIMLLSCKCALTGKTEAELADMKECPYDPGGYFVVKGVEKV 81
            VTPFQCRLRDCTYSAPL+VNVRYTR  QIVN+ NI IGRIP+MLLSCKC LTGK+EAELADMKECPYDPGGYFVVKGVEKV
Sbjct:    5 VTPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKTNINIGRIPVMLLSCKCVLTGKSEAELADMKECPYDPGGYFVVKGVEKV 85          
BLAST of mRNA_D-mesarthrocarpus_Contig10210.1.1 vs. uniprot
Match: A0A6H5JAF8_9PHAE (DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAF8_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 2.410e-42
Identity = 71/81 (87.65%), Postives = 76/81 (93.83%), Query Frame = 0
Query:    1 VTPFQCRLRDCTYSAPLYVNVRYTRAHQIVNRNNICIGRIPIMLLSCKCALTGKTEAELADMKECPYDPGGYFVVKGVEKV 81
            +TPFQCRLRDCTYSAPL+VNVRYTR  QIVN+ NI IGRIP+MLLSCKC LTGK+EAELADMKECPYDPGGYFVVKGVEKV
Sbjct:  153 ITPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKTNINIGRIPVMLLSCKCVLTGKSEAELADMKECPYDPGGYFVVKGVEKV 233          
BLAST of mRNA_D-mesarthrocarpus_Contig10210.1.1 vs. uniprot
Match: A0A7S3DT07_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DT07_9STRA)

HSP 1 Score: 137 bits (344), Expect = 1.150e-37
Identity = 62/81 (76.54%), Postives = 70/81 (86.42%), Query Frame = 0
Query:    1 VTPFQCRLRDCTYSAPLYVNVRYTRAHQIVNRNNICIGRIPIMLLSCKCALTGKTEAELADMKECPYDPGGYFVVKGVEKV 81
            +TPFQCRLRDC+YSAP+YVNVRYTR  QIV + N+ IGR+PIML S  C LTGKTE ELA +KECPYDPGGYFV+KGVEKV
Sbjct:   52 ITPFQCRLRDCSYSAPIYVNVRYTRGRQIVVKRNVMIGRMPIMLRSQNCVLTGKTEDELAALKECPYDPGGYFVIKGVEKV 132          
BLAST of mRNA_D-mesarthrocarpus_Contig10210.1.1 vs. uniprot
Match: A0A482SHA3_9ARCH (DNA-directed RNA polymerase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SHA3_9ARCH)

HSP 1 Score: 129 bits (324), Expect = 6.960e-37
Identity = 62/81 (76.54%), Postives = 66/81 (81.48%), Query Frame = 0
Query:    1 VTPFQCRLRDCTYSAPLYVNVRYTRAHQIVNRNNICIGRIPIMLLSCKCALTGKTEAELADMKECPYDPGGYFVVKGVEKV 81
            VTPFQCRLRDCTYSAPLYVNV+YTR  QIV +NNI IGRIPIML S KC L  K+  EL  +KEC YDPGGYFVVKG EKV
Sbjct:   23 VTPFQCRLRDCTYSAPLYVNVKYTRQKQIVVKNNIQIGRIPIMLRSEKCVLNNKSSEELGALKECEYDPGGYFVVKGTEKV 103          
BLAST of mRNA_D-mesarthrocarpus_Contig10210.1.1 vs. uniprot
Match: A0A7S2XTK8_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XTK8_9STRA)

HSP 1 Score: 132 bits (333), Expect = 1.350e-36
Identity = 60/80 (75.00%), Postives = 68/80 (85.00%), Query Frame = 0
Query:    2 TPFQCRLRDCTYSAPLYVNVRYTRAHQIVNRNNICIGRIPIMLLSCKCALTGKTEAELADMKECPYDPGGYFVVKGVEKV 81
            TPFQCRLRDCTYSAP+YVNVRYTR  QIV +  + +GR+PIML S KC L+ KTE +LA MKECPYDPGGYFV+KGVEKV
Sbjct:  140 TPFQCRLRDCTYSAPIYVNVRYTRGRQIVIKKKVLVGRMPIMLRSSKCLLSHKTERQLAAMKECPYDPGGYFVIKGVEKV 219          
BLAST of mRNA_D-mesarthrocarpus_Contig10210.1.1 vs. uniprot
Match: A0A7S2EFY4_TRICV (DNA-directed RNA polymerase (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EFY4_TRICV)

HSP 1 Score: 129 bits (323), Expect = 3.100e-36
Identity = 56/80 (70.00%), Postives = 69/80 (86.25%), Query Frame = 0
Query:    2 TPFQCRLRDCTYSAPLYVNVRYTRAHQIVNRNNICIGRIPIMLLSCKCALTGKTEAELADMKECPYDPGGYFVVKGVEKV 81
            +PFQCRLRDCTYSAP+YV+VRYTR  QIV +  + +GR+PIML S KC L+GKTE +LA M+ECP+DPGGYF++KGVEKV
Sbjct:   51 SPFQCRLRDCTYSAPIYVDVRYTRGRQIVVKKKVVVGRMPIMLRSSKCMLSGKTERQLARMRECPHDPGGYFIIKGVEKV 130          
BLAST of mRNA_D-mesarthrocarpus_Contig10210.1.1 vs. uniprot
Match: I2CNY0_NANGC (DNA-directed RNA polymerase subunit beta n=3 Tax=Monodopsidaceae TaxID=425072 RepID=I2CNY0_NANGC)

HSP 1 Score: 135 bits (340), Expect = 3.470e-35
Identity = 61/81 (75.31%), Postives = 70/81 (86.42%), Query Frame = 0
Query:    1 VTPFQCRLRDCTYSAPLYVNVRYTRAHQIVNRNNICIGRIPIMLLSCKCALTGKTEAELADMKECPYDPGGYFVVKGVEKV 81
            VTPFQCRLRDCTYSAP+ V+VRYTR  QIV +  + IGRIPIML SCKC L G++EAELA+ KECPYDPGGYF+VKGVE+V
Sbjct:  121 VTPFQCRLRDCTYSAPITVDVRYTRGRQIVVKRGVMIGRIPIMLRSCKCILAGRSEAELAEKKECPYDPGGYFIVKGVERV 201          
BLAST of mRNA_D-mesarthrocarpus_Contig10210.1.1 vs. uniprot
Match: K0SA07_THAOC (DNA-directed RNA polymerase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SA07_THAOC)

HSP 1 Score: 132 bits (332), Expect = 1.830e-34
Identity = 60/80 (75.00%), Postives = 67/80 (83.75%), Query Frame = 0
Query:    2 TPFQCRLRDCTYSAPLYVNVRYTRAHQIVNRNNICIGRIPIMLLSCKCALTGKTEAELADMKECPYDPGGYFVVKGVEKV 81
            TPFQCRLRDCTYSAP+YVNVRYTR  QIV R  + +GR+PIML S +C L  +TE ELA MKECPYDPGGYF+VKGVEKV
Sbjct:  246 TPFQCRLRDCTYSAPIYVNVRYTRGRQIVVRKKVTVGRMPIMLRSSRCLLRDRTERELAAMKECPYDPGGYFIVKGVEKV 325          
BLAST of mRNA_D-mesarthrocarpus_Contig10210.1.1 vs. uniprot
Match: B8BQM2_THAPS (DNA-directed RNA polymerase subunit beta n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BQM2_THAPS)

HSP 1 Score: 133 bits (334), Expect = 2.230e-34
Identity = 61/80 (76.25%), Postives = 67/80 (83.75%), Query Frame = 0
Query:    2 TPFQCRLRDCTYSAPLYVNVRYTRAHQIVNRNNICIGRIPIMLLSCKCALTGKTEAELADMKECPYDPGGYFVVKGVEKV 81
            TPFQCRLRDCTYSAP+YVNVRYTR  QIV +  + IGR+PIML S KC L  K+E ELA MKECPYDPGGYFV+KGVEKV
Sbjct:   61 TPFQCRLRDCTYSAPIYVNVRYTRGRQIVVKKKVMIGRMPIMLRSSKCLLRDKSERELAQMKECPYDPGGYFVIKGVEKV 140          
BLAST of mRNA_D-mesarthrocarpus_Contig10210.1.1 vs. uniprot
Match: A0A7S4QYU8_9STRA (DNA-directed RNA polymerase subunit beta n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QYU8_9STRA)

HSP 1 Score: 133 bits (334), Expect = 2.240e-34
Identity = 62/80 (77.50%), Postives = 68/80 (85.00%), Query Frame = 0
Query:    2 TPFQCRLRDCTYSAPLYVNVRYTRAHQIVNRNNICIGRIPIMLLSCKCALTGKTEAELADMKECPYDPGGYFVVKGVEKV 81
            TPFQCRLRDCTYSAP+YV+VRYTR  QIV +  I IGR+PIML S KC LTGKT  +LA MKECP+DPGGYFVVKGVEKV
Sbjct:  295 TPFQCRLRDCTYSAPIYVDVRYTRGRQIVVKRKIMIGRLPIMLRSSKCLLTGKTHRQLARMKECPHDPGGYFVVKGVEKV 374          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10210.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP28_ECTSI7.090e-4888.89DNA-directed RNA polymerase n=1 Tax=Ectocarpus sil... [more]
A0A6H5JAF8_9PHAE2.410e-4287.65DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp.... [more]
A0A7S3DT07_9STRA1.150e-3776.54DNA-directed RNA polymerase (Fragment) n=1 Tax=Amp... [more]
A0A482SHA3_9ARCH6.960e-3776.54DNA-directed RNA polymerase n=1 Tax=archaeon TaxID... [more]
A0A7S2XTK8_9STRA1.350e-3675.00DNA-directed RNA polymerase (Fragment) n=1 Tax=Att... [more]
A0A7S2EFY4_TRICV3.100e-3670.00DNA-directed RNA polymerase (Fragment) n=1 Tax=Tri... [more]
I2CNY0_NANGC3.470e-3575.31DNA-directed RNA polymerase subunit beta n=3 Tax=M... [more]
K0SA07_THAOC1.830e-3475.00DNA-directed RNA polymerase n=1 Tax=Thalassiosira ... [more]
B8BQM2_THAPS2.230e-3476.25DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
A0A7S4QYU8_9STRA2.240e-3477.50DNA-directed RNA polymerase subunit beta n=2 Tax=D... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007644RNA polymerase, beta subunit, protrusionPFAMPF04563RNA_pol_Rpb2_1coord: 1..81
e-value: 1.2E-28
score: 100.1
NoneNo IPR availableGENE3D3.90.1100.10coord: 1..81
e-value: 2.3E-17
score: 65.1
NoneNo IPR availablePANTHERPTHR20856:SF8DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC2coord: 1..81
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 2..81
IPR015712DNA-directed RNA polymerase, subunit 2PANTHERPTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2coord: 1..81

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10210contigD-mesarthrocarpus_Contig10210:64..1392 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10210.1.1mRNA_D-mesarthrocarpus_Contig10210.1.1Discosporangium mesarthrocarpum MT17_79mRNAD-mesarthrocarpus_Contig10210 64..1392 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_D-mesarthrocarpus_Contig10210.1.1 ID=prot_D-mesarthrocarpus_Contig10210.1.1|Name=mRNA_D-mesarthrocarpus_Contig10210.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=81bp
VTPFQCRLRDCTYSAPLYVNVRYTRAHQIVNRNNICIGRIPIMLLSCKCA
LTGKTEAELADMKECPYDPGGYFVVKGVEKV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007644RNA_pol_bsu_protrusion
IPR015712DNA-dir_RNA_pol_su2