mRNA_D-mesarthrocarpus_Contig10210.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10210.1.1 vs. uniprot
Match: D7FP28_ECTSI (DNA-directed RNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP28_ECTSI) HSP 1 Score: 155 bits (393), Expect = 7.090e-48 Identity = 72/81 (88.89%), Postives = 76/81 (93.83%), Query Frame = 1 Query: 1 VTPFQCRLRDCTYSAPLYVNVRYTRAHQIVNRNNICIGRIPIMLLSCKCALTGKTEAELADMKECPYDPGGYFVVKGVEKV 243 VTPFQCRLRDCTYSAPL+VNVRYTR QIVN+ NI IGRIP+MLLSCKC LTGK+EAELADMKECPYDPGGYFVVKGVEKV Sbjct: 5 VTPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKTNINIGRIPVMLLSCKCVLTGKSEAELADMKECPYDPGGYFVVKGVEKV 85
BLAST of mRNA_D-mesarthrocarpus_Contig10210.1.1 vs. uniprot
Match: A0A6H5JAF8_9PHAE (DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAF8_9PHAE) HSP 1 Score: 155 bits (392), Expect = 2.410e-42 Identity = 71/81 (87.65%), Postives = 76/81 (93.83%), Query Frame = 1 Query: 1 VTPFQCRLRDCTYSAPLYVNVRYTRAHQIVNRNNICIGRIPIMLLSCKCALTGKTEAELADMKECPYDPGGYFVVKGVEKV 243 +TPFQCRLRDCTYSAPL+VNVRYTR QIVN+ NI IGRIP+MLLSCKC LTGK+EAELADMKECPYDPGGYFVVKGVEKV Sbjct: 153 ITPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKTNINIGRIPVMLLSCKCVLTGKSEAELADMKECPYDPGGYFVVKGVEKV 233
BLAST of mRNA_D-mesarthrocarpus_Contig10210.1.1 vs. uniprot
Match: A0A7S3DT07_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DT07_9STRA) HSP 1 Score: 137 bits (344), Expect = 1.150e-37 Identity = 62/81 (76.54%), Postives = 70/81 (86.42%), Query Frame = 1 Query: 1 VTPFQCRLRDCTYSAPLYVNVRYTRAHQIVNRNNICIGRIPIMLLSCKCALTGKTEAELADMKECPYDPGGYFVVKGVEKV 243 +TPFQCRLRDC+YSAP+YVNVRYTR QIV + N+ IGR+PIML S C LTGKTE ELA +KECPYDPGGYFV+KGVEKV Sbjct: 52 ITPFQCRLRDCSYSAPIYVNVRYTRGRQIVVKRNVMIGRMPIMLRSQNCVLTGKTEDELAALKECPYDPGGYFVIKGVEKV 132
BLAST of mRNA_D-mesarthrocarpus_Contig10210.1.1 vs. uniprot
Match: A0A482SHA3_9ARCH (DNA-directed RNA polymerase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SHA3_9ARCH) HSP 1 Score: 129 bits (324), Expect = 6.960e-37 Identity = 62/81 (76.54%), Postives = 66/81 (81.48%), Query Frame = 1 Query: 1 VTPFQCRLRDCTYSAPLYVNVRYTRAHQIVNRNNICIGRIPIMLLSCKCALTGKTEAELADMKECPYDPGGYFVVKGVEKV 243 VTPFQCRLRDCTYSAPLYVNV+YTR QIV +NNI IGRIPIML S KC L K+ EL +KEC YDPGGYFVVKG EKV Sbjct: 23 VTPFQCRLRDCTYSAPLYVNVKYTRQKQIVVKNNIQIGRIPIMLRSEKCVLNNKSSEELGALKECEYDPGGYFVVKGTEKV 103
BLAST of mRNA_D-mesarthrocarpus_Contig10210.1.1 vs. uniprot
Match: A0A7S2XTK8_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XTK8_9STRA) HSP 1 Score: 132 bits (333), Expect = 1.350e-36 Identity = 60/80 (75.00%), Postives = 68/80 (85.00%), Query Frame = 1 Query: 4 TPFQCRLRDCTYSAPLYVNVRYTRAHQIVNRNNICIGRIPIMLLSCKCALTGKTEAELADMKECPYDPGGYFVVKGVEKV 243 TPFQCRLRDCTYSAP+YVNVRYTR QIV + + +GR+PIML S KC L+ KTE +LA MKECPYDPGGYFV+KGVEKV Sbjct: 140 TPFQCRLRDCTYSAPIYVNVRYTRGRQIVIKKKVLVGRMPIMLRSSKCLLSHKTERQLAAMKECPYDPGGYFVIKGVEKV 219
BLAST of mRNA_D-mesarthrocarpus_Contig10210.1.1 vs. uniprot
Match: A0A7S2EFY4_TRICV (DNA-directed RNA polymerase (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EFY4_TRICV) HSP 1 Score: 129 bits (323), Expect = 3.100e-36 Identity = 56/80 (70.00%), Postives = 69/80 (86.25%), Query Frame = 1 Query: 4 TPFQCRLRDCTYSAPLYVNVRYTRAHQIVNRNNICIGRIPIMLLSCKCALTGKTEAELADMKECPYDPGGYFVVKGVEKV 243 +PFQCRLRDCTYSAP+YV+VRYTR QIV + + +GR+PIML S KC L+GKTE +LA M+ECP+DPGGYF++KGVEKV Sbjct: 51 SPFQCRLRDCTYSAPIYVDVRYTRGRQIVVKKKVVVGRMPIMLRSSKCMLSGKTERQLARMRECPHDPGGYFIIKGVEKV 130
BLAST of mRNA_D-mesarthrocarpus_Contig10210.1.1 vs. uniprot
Match: I2CNY0_NANGC (DNA-directed RNA polymerase subunit beta n=3 Tax=Monodopsidaceae TaxID=425072 RepID=I2CNY0_NANGC) HSP 1 Score: 135 bits (340), Expect = 3.470e-35 Identity = 61/81 (75.31%), Postives = 70/81 (86.42%), Query Frame = 1 Query: 1 VTPFQCRLRDCTYSAPLYVNVRYTRAHQIVNRNNICIGRIPIMLLSCKCALTGKTEAELADMKECPYDPGGYFVVKGVEKV 243 VTPFQCRLRDCTYSAP+ V+VRYTR QIV + + IGRIPIML SCKC L G++EAELA+ KECPYDPGGYF+VKGVE+V Sbjct: 121 VTPFQCRLRDCTYSAPITVDVRYTRGRQIVVKRGVMIGRIPIMLRSCKCILAGRSEAELAEKKECPYDPGGYFIVKGVERV 201
BLAST of mRNA_D-mesarthrocarpus_Contig10210.1.1 vs. uniprot
Match: K0SA07_THAOC (DNA-directed RNA polymerase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SA07_THAOC) HSP 1 Score: 132 bits (332), Expect = 1.830e-34 Identity = 60/80 (75.00%), Postives = 67/80 (83.75%), Query Frame = 1 Query: 4 TPFQCRLRDCTYSAPLYVNVRYTRAHQIVNRNNICIGRIPIMLLSCKCALTGKTEAELADMKECPYDPGGYFVVKGVEKV 243 TPFQCRLRDCTYSAP+YVNVRYTR QIV R + +GR+PIML S +C L +TE ELA MKECPYDPGGYF+VKGVEKV Sbjct: 246 TPFQCRLRDCTYSAPIYVNVRYTRGRQIVVRKKVTVGRMPIMLRSSRCLLRDRTERELAAMKECPYDPGGYFIVKGVEKV 325
BLAST of mRNA_D-mesarthrocarpus_Contig10210.1.1 vs. uniprot
Match: B8BQM2_THAPS (DNA-directed RNA polymerase subunit beta n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BQM2_THAPS) HSP 1 Score: 133 bits (334), Expect = 2.230e-34 Identity = 61/80 (76.25%), Postives = 67/80 (83.75%), Query Frame = 1 Query: 4 TPFQCRLRDCTYSAPLYVNVRYTRAHQIVNRNNICIGRIPIMLLSCKCALTGKTEAELADMKECPYDPGGYFVVKGVEKV 243 TPFQCRLRDCTYSAP+YVNVRYTR QIV + + IGR+PIML S KC L K+E ELA MKECPYDPGGYFV+KGVEKV Sbjct: 61 TPFQCRLRDCTYSAPIYVNVRYTRGRQIVVKKKVMIGRMPIMLRSSKCLLRDKSERELAQMKECPYDPGGYFVIKGVEKV 140
BLAST of mRNA_D-mesarthrocarpus_Contig10210.1.1 vs. uniprot
Match: A0A7S4QYU8_9STRA (DNA-directed RNA polymerase subunit beta n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QYU8_9STRA) HSP 1 Score: 133 bits (334), Expect = 2.240e-34 Identity = 62/80 (77.50%), Postives = 68/80 (85.00%), Query Frame = 1 Query: 4 TPFQCRLRDCTYSAPLYVNVRYTRAHQIVNRNNICIGRIPIMLLSCKCALTGKTEAELADMKECPYDPGGYFVVKGVEKV 243 TPFQCRLRDCTYSAP+YV+VRYTR QIV + I IGR+PIML S KC LTGKT +LA MKECP+DPGGYFVVKGVEKV Sbjct: 295 TPFQCRLRDCTYSAPIYVDVRYTRGRQIVVKRKIMIGRLPIMLRSSKCLLTGKTHRQLARMKECPHDPGGYFVVKGVEKV 374 The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10210.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig10210.1.1 >prot_D-mesarthrocarpus_Contig10210.1.1 ID=prot_D-mesarthrocarpus_Contig10210.1.1|Name=mRNA_D-mesarthrocarpus_Contig10210.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=81bp VTPFQCRLRDCTYSAPLYVNVRYTRAHQIVNRNNICIGRIPIMLLSCKCAback to top mRNA from alignment at D-mesarthrocarpus_Contig10210:64..1392+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-mesarthrocarpus_Contig10210.1.1 ID=mRNA_D-mesarthrocarpus_Contig10210.1.1|Name=mRNA_D-mesarthrocarpus_Contig10210.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1329bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10210:64..1392+ (Discosporangium mesarthrocarpum MT17_79)back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10210:64..1392+ >mRNA_D-mesarthrocarpus_Contig10210.1.1 ID=mRNA_D-mesarthrocarpus_Contig10210.1.1|Name=mRNA_D-mesarthrocarpus_Contig10210.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=243bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10210:64..1392+ (Discosporangium mesarthrocarpum MT17_79)back to top |