mRNA_D-mesarthrocarpus_Contig1021.7.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig1021.7.1
Unique NamemRNA_D-mesarthrocarpus_Contig1021.7.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1021.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig1021contigD-mesarthrocarpus_Contig1021:16424..17350 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size927
Hectar predicted targeting categoryother localisation
Exons1
Cds size468
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789164.5618238-UTR-D-mesarthrocarpus_Contig1021:16423..166021680789164.5618238-UTR-D-mesarthrocarpus_Contig1021:16423..16602Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig1021 16424..16602 -
1680789164.5797446-UTR-D-mesarthrocarpus_Contig1021:17070..173501680789164.5797446-UTR-D-mesarthrocarpus_Contig1021:17070..17350Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig1021 17071..17350 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789164.5710576-CDS-D-mesarthrocarpus_Contig1021:16602..170701680789164.5710576-CDS-D-mesarthrocarpus_Contig1021:16602..17070Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1021 16603..17070 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig1021.7.1prot_D-mesarthrocarpus_Contig1021.7.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig1021 16603..17070 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig1021.7.1

>prot_D-mesarthrocarpus_Contig1021.7.1 ID=prot_D-mesarthrocarpus_Contig1021.7.1|Name=mRNA_D-mesarthrocarpus_Contig1021.7.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=156bp
MPSGDLSELPDRREASEEELCITLLKLAGVEKDCAYDQTAIRMELMKVAR
VGNEATAVDRASAQMESVSEYVEHNNLDRYFRIEDGSWNPGPAKIPSEEL
LESLYPQTFGQRVLGEVRYDTSVKRDPARVFDLVEMHAQSFKGGCGSGEP
QHEKE*
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mRNA from alignment at D-mesarthrocarpus_Contig1021:16424..17350-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig1021.7.1 ID=mRNA_D-mesarthrocarpus_Contig1021.7.1|Name=mRNA_D-mesarthrocarpus_Contig1021.7.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=927bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1021:16424..17350- (Discosporangium mesarthrocarpum MT17_79)
GGAGAAACTAAGACGGGGTCCAGGATGGCGGATATCGCGAGATCGACGCC
AGCGGCGAAGTCTAGCGACTATGAGCCGAAAAGTGGGCCGGCGGGAGAAG
GGTTCAACTTCGCGGCCATGCGAACGACGAACATCGAAGGCCCACGGCTA
AAGAAGCTGACCCAGGCCGACGCAAAGGTGTTTCTCGCGGAAAGACGAAC
ATGCAAGGATAGCGTGCGCCTACAGTGGGCAAAGCGGGGCTTACAAGTGG
ATTTGATGAGCCTGGCTGAGACTTTGACACATGCCCAGCGGCGATCTTAG
CGAGCTGCCCGATCGACGGGAGGCGAGCGAGGAGGAGCTTTGCATTACAC
TGCTGAAGTTAGCTGGGGTGGAGAAGGATTGTGCGTACGACCAAACTGCC
ATCCGAATGGAGCTGATGAAGGTGGCCAGAGTGGGAAACGAGGCGACGGC
TGTCGATCGTGCATCCGCTCAGATGGAGAGCGTGTCCGAATATGTGGAAC
ACAACAACTTGGATCGGTACTTTCGTATAGAGGACGGGAGCTGGAATCCA
GGGCCGGCGAAAATTCCGTCAGAAGAACTTCTAGAGAGTCTTTATCCGCA
GACGTTCGGGCAGAGAGTGCTGGGCGAAGTGCGCTATGACACCAGCGTGA
AAAGGGATCCGGCTCGGGTATTTGACCTGGTGGAGATGCATGCCCAGTCC
TTCAAGGGAGGTTGCGGCTCCGGAGAGCCGCAGCATGAGAAGGAATGACG
AGGGGAAGGCTGAACCCCACGAGGAGTCAGGCAAGGGCAAGTCTGCGGGA
AGGGACAAACCAGGTGGCCGTGCACCGACCACAGAGATTGGCAAATTCCA
GGGAACCTCCTTCAATTGTGGGAAGCAGGGGCACAAGAGCCAGGAGTGCT
ATCCTGCCGTTCAGGTACGCTGGGGGG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1021:16424..17350-

>mRNA_D-mesarthrocarpus_Contig1021.7.1 ID=mRNA_D-mesarthrocarpus_Contig1021.7.1|Name=mRNA_D-mesarthrocarpus_Contig1021.7.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=468bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1021:16424..17350- (Discosporangium mesarthrocarpum MT17_79)
ATGCCCAGCGGCGATCTTAGCGAGCTGCCCGATCGACGGGAGGCGAGCGA
GGAGGAGCTTTGCATTACACTGCTGAAGTTAGCTGGGGTGGAGAAGGATT
GTGCGTACGACCAAACTGCCATCCGAATGGAGCTGATGAAGGTGGCCAGA
GTGGGAAACGAGGCGACGGCTGTCGATCGTGCATCCGCTCAGATGGAGAG
CGTGTCCGAATATGTGGAACACAACAACTTGGATCGGTACTTTCGTATAG
AGGACGGGAGCTGGAATCCAGGGCCGGCGAAAATTCCGTCAGAAGAACTT
CTAGAGAGTCTTTATCCGCAGACGTTCGGGCAGAGAGTGCTGGGCGAAGT
GCGCTATGACACCAGCGTGAAAAGGGATCCGGCTCGGGTATTTGACCTGG
TGGAGATGCATGCCCAGTCCTTCAAGGGAGGTTGCGGCTCCGGAGAGCCG
CAGCATGAGAAGGAATGA
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