mRNA_D-mesarthrocarpus_Contig102.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig102.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig102.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig102.2.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 2.550e-14
Identity = 51/116 (43.97%), Postives = 74/116 (63.79%), Query Frame = 2
Query:  368 DPTK------RMSDVLLLWMTTALEKHGLLRQDAATSTSDSGSDVKRLLDVLVWCLGWSLCVPRIDNRALTEAMGSSLDPSRSKNKPARQELKKVKAVIEHLNKSPTMKAHFQQGQ 697
            +PTK      R+S +L  ++ + LE++GL      ++TSD+GSDVKRL DVL+  L W  CV  + N AL EA G+ +DP++S N  AR+ +  VK V+EH+ KSP  KA F++ Q
Sbjct:  205 NPTKELLEDNRLSALLQKYLESVLEEYGLDVSLLFSATSDAGSDVKRLCDVLLPGL-WEWCVCHMINCALVEAFGTHVDPAKSGNPGARKVITTVKKVVEHIRKSPRAKAIFEEEQ 319          
BLAST of mRNA_D-mesarthrocarpus_Contig102.2.1 vs. uniprot
Match: A0A2V3ILY8_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ILY8_9FLOR)

HSP 1 Score: 75.9 bits (185), Expect = 7.510e-13
Identity = 44/115 (38.26%), Postives = 64/115 (55.65%), Query Frame = 2
Query:  353 PFNGIDPTKRMSDVLLLWMTTALEKHGLLRQDAATSTSDSGSDVKRLLDVLVWCLGWSLCVPRIDNRALTEAMGSSLDPSRSKNKPARQELKKVKAVIEHLNKSPTMKAHFQQGQ 697
            P   + P + +SD+L LW    + +  +      +STSD+GSDVKRL  VL+    W  C+P + N  L  A G+ L+    +N  AR+ LK +K VI H+NKS  MK  F++ Q
Sbjct:  129 PSGNLLPGRSLSDILQLWTNKIILEFNVSYDKILSSTSDTGSDVKRLCSVLI-PESWEWCLPHMLNCVLVGAFGTGLNCVNIRNNGARRLLKDLKKVIRHVNKSSVMKQKFKETQ 242          
BLAST of mRNA_D-mesarthrocarpus_Contig102.2.1 vs. uniprot
Match: A0A6H5JNY1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY1_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 8.380e-13
Identity = 47/116 (40.52%), Postives = 72/116 (62.07%), Query Frame = 2
Query:  368 DPTK------RMSDVLLLWMTTALEKHGLLRQDAATSTSDSGSDVKRLLDVLVWCLGWSLCVPRIDNRALTEAMGSSLDPSRSKNKPARQELKKVKAVIEHLNKSPTMKAHFQQGQ 697
            +PTK      R+S +L  ++   L ++GL      ++TSD+GSDVKRL DVL+  L W  CV  + N A+ +A G  +DP++S+N  AR+ +  VK ++EH+ KSP  KA F++ Q
Sbjct:   26 NPTKELLEDNRLSTLLQKYLERVLAEYGLDVSLLFSATSDAGSDVKRLCDVLLPGL-WEWCVCHMMNCAVVKAFGMHVDPAKSRNPGARKVITTVKTIVEHIRKSPRAKAIFEEEQ 140          
BLAST of mRNA_D-mesarthrocarpus_Contig102.2.1 vs. uniprot
Match: A0A6H5KWS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWS6_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 1.060e-12
Identity = 50/116 (43.10%), Postives = 72/116 (62.07%), Query Frame = 2
Query:  368 DPTK------RMSDVLLLWMTTALEKHGLLRQDAATSTSDSGSDVKRLLDVLVWCLGWSLCVPRIDNRALTEAMGSSLDPSRSKNKPARQELKKVKAVIEHLNKSPTMKAHFQQGQ 697
            +PTK      R+S ++   + + LE++GL      ++TSDSGSDVKRL DVL+  L W  CV  + N AL EA G+ +D ++S+N  AR+ +   K V+EH+ KSP  KA F+Q Q
Sbjct:  279 NPTKELLEDNRLSALVQKHLESVLEEYGLDVSLVFSATSDSGSDVKRLCDVLLPGL-WEWCVCHMINCALVEAFGTHVDSAKSRNPGARKVITMGKKVVEHIPKSPRAKAIFEQEQ 393          
BLAST of mRNA_D-mesarthrocarpus_Contig102.2.1 vs. uniprot
Match: A0A2R6X362_MARPO (Uncharacterized protein n=1 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6X362_MARPO)

HSP 1 Score: 75.5 bits (184), Expect = 2.790e-12
Identity = 45/107 (42.06%), Postives = 65/107 (60.75%), Query Frame = 2
Query:  377 KRMSDVLLLWMTTALEKHGL-LRQDAATSTSDSGSDVKRLLDVLV--WCLGWSLCVPRIDNRALTEAMGSSLDPSRSKNKPARQELKKVKAVIEHLNKSPTMKAHFQ 688
            ++ S VL  W    L + G+ +R+D  TS SDSGSDVKR L VL+  W   W  C+  + + ALT+A G+++DP  SKN  AR   + +K VIE +NKS  ++  F+
Sbjct:  217 EKASAVLDQWSQGVLSEFGIEVRRDVLTSVSDSGSDVKRTLQVLMDAW---WEWCISHLSHLALTDAFGTAIDPVASKNALARVFFRTIKKVIESVNKSEYLQGAFE 320          
BLAST of mRNA_D-mesarthrocarpus_Contig102.2.1 vs. uniprot
Match: A0A6H5KEC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEC8_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 9.190e-6
Identity = 36/85 (42.35%), Postives = 54/85 (63.53%), Query Frame = 2
Query:  368 DPTK------RMSDVLLLWMTTALEKHGLLRQDAATSTSDSGSDVKRLLDVLVWCLGWSLCVPRIDNRALTEAMGSSLDPSRSKN 604
            +PTK      R+S +L  ++ + LE++GL      ++TSD+GSDVKRL DVL+  L W  CV  + N AL EA G+ ++P++S N
Sbjct:  126 NPTKELLEDNRLSALLQKYLESVLEEYGLDVSLLFSATSDAGSDVKRLCDVLLPGL-WEWCVCHMINCALVEAFGTHVNPAKSIN 209          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig102.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JZ82_9PHAE2.550e-1443.97Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A2V3ILY8_9FLOR7.510e-1338.26Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A6H5JNY1_9PHAE8.380e-1340.52Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KWS6_9PHAE1.060e-1243.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2R6X362_MARPO2.790e-1242.06Uncharacterized protein n=1 Tax=Marchantia polymor... [more]
A0A6H5KEC8_9PHAE9.190e-642.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig102contigD-mesarthrocarpus_Contig102:4222..4918 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog4792.ETI54656
Model size697
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000229
EggNOG OGs2CZK4@1|root,2SARG@2759|Eukaryota,3QH9R@4776|Peronosporales
Cds size315
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789162.9902854-CDS-D-mesarthrocarpus_Contig102:4221..45361680789162.9902854-CDS-D-mesarthrocarpus_Contig102:4221..4536Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig102 4222..4536 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789163.005597-UTR-D-mesarthrocarpus_Contig102:4536..49181680789163.005597-UTR-D-mesarthrocarpus_Contig102:4536..4918Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig102 4537..4918 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig102.2.1prot_D-mesarthrocarpus_Contig102.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig102 4222..4536 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig102.2.1

>prot_D-mesarthrocarpus_Contig102.2.1 ID=prot_D-mesarthrocarpus_Contig102.2.1|Name=mRNA_D-mesarthrocarpus_Contig102.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=105bp
MSDVLLLWMTTALEKHGLLRQDAATSTSDSGSDVKRLLDVLVWCLGWSLC
VPRIDNRALTEAMGSSLDPSRSKNKPARQELKKVKAVIEHLNKSPTMKAH
FQQGQ
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mRNA from alignment at D-mesarthrocarpus_Contig102:4222..4918-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig102.2.1 ID=mRNA_D-mesarthrocarpus_Contig102.2.1|Name=mRNA_D-mesarthrocarpus_Contig102.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=697bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig102:4222..4918- (Discosporangium mesarthrocarpum MT17_79)
AGGTATCACGAGATCATGCTTGTGAGGTTGACTGTGAAGAAGATGATGTC GTCCTCCTTCCCGGAGGATAAGGACTTACGCCGCCACCTTCTCGGCTTAA ACAACAAGAAATCTCCAGCTGCTGTCAGTGCTAAGACTGTGAAGCATCTC ACCCTGAAGATGTATGACTCAACGAAGTCAACCACCGTCCAACAGCTCTC TAGGCCAAATCATCGAGCCCTCTTCCTGTAACCCATGTCAACATAGGCCT TTGGACAGGTGAGCCATCCAACCGCCAAGTCGTGGGCCTTCAGGTGTTCT GGGTGCATGATTGGGTTCTCCGCAGTGCGAACTTGGTGGTGAAGAGATTT GACCCTTCAACGGCATTGATCCGACGAAGAGGATGTCTGATGTCCTCTTG CTGTGGATGACCACTGCGCTGGAGAAGCATGGACTGCTACGGCAGGATGC CGCCACATCTACCTCAGACAGTGGGAGCGATGTCAAGCGTCTTCTTGACG TTCTGGTGTGGTGTTTGGGCTGGTCCTTGTGTGTTCCACGCATCGACAAC CGCGCTCTGACAGAGGCAATGGGGTCGAGTTTGGATCCAAGCAGGTCCAA GAACAAGCCAGCAAGGCAGGAGTTGAAGAAAGTGAAAGCTGTGATCGAAC ACCTGAACAAGTCTCCGACCATGAAGGCCCACTTCCAGCAGGGTCAA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig102:4222..4918-

>mRNA_D-mesarthrocarpus_Contig102.2.1 ID=mRNA_D-mesarthrocarpus_Contig102.2.1|Name=mRNA_D-mesarthrocarpus_Contig102.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=315bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig102:4222..4918- (Discosporangium mesarthrocarpum MT17_79)
ATGTCTGATGTCCTCTTGCTGTGGATGACCACTGCGCTGGAGAAGCATGG
ACTGCTACGGCAGGATGCCGCCACATCTACCTCAGACAGTGGGAGCGATG
TCAAGCGTCTTCTTGACGTTCTGGTGTGGTGTTTGGGCTGGTCCTTGTGT
GTTCCACGCATCGACAACCGCGCTCTGACAGAGGCAATGGGGTCGAGTTT
GGATCCAAGCAGGTCCAAGAACAAGCCAGCAAGGCAGGAGTTGAAGAAAG
TGAAAGCTGTGATCGAACACCTGAACAAGTCTCCGACCATGAAGGCCCAC
TTCCAGCAGGGTCAA
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