mRNA_D-mesarthrocarpus_Contig10198.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10198.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig10198.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10198.2.1 vs. uniprot
Match: A0A6H5KKG1_9PHAE (VPS13_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKG1_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 6.600e-15
Identity = 48/106 (45.28%), Postives = 66/106 (62.26%), Query Frame = 3 
Query:    3 GSMVVACEVQDFSNFLRVPMVSNALLKWDATTSYPPHLSPSQEGKAADKTGGGAGSVGPDSSAMEETLLSPHRPALSVEVEVHDAVLSISATAIQCLDQCIGEMKK 320
            GS VVA +VQDFSNFLR+P++S+A +K D +TS                  GG G +    +A  E+LLSP RP  S  V+V+ AV+S+S TA+QC+DQCI E+ +
Sbjct: 2673 GSAVVAADVQDFSNFLRLPLLSHAAVKLDVSTS---------------SVRGGTGRM----AAEGESLLSPFRPIASGAVDVNGAVVSMSVTAMQCIDQCIAELTR 2759
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10198.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KKG1_9PHAE6.600e-1545.28VPS13_C domain-containing protein n=2 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10198contigD-mesarthrocarpus_Contig10198:1218..1947 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LBD2
Preferred nameVPS13B
PFAMsChorein_N,SHR-BD,VPS13,VPS13_C
Model size531
Max annot lvl2759|Eukaryota
KEGG koko:K19526
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0006605,GO:0006623,GO:0006810,GO:0006886,GO:0007034,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0016020,GO:0019898,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0044425,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0072594,GO:0072665,GO:0072666
Exons2
Evalue6.47e-11
EggNOG OGsCOG5043@1|root,KOG1809@2759|Eukaryota
Descriptionregulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
Cds size522
COG categoryU
BRITEko00000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789162.7643979-UTR-D-mesarthrocarpus_Contig10198:1217..12251680789162.7643979-UTR-D-mesarthrocarpus_Contig10198:1217..1225Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10198 1218..1225 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789162.7747772-CDS-D-mesarthrocarpus_Contig10198:1225..12431680789162.7747772-CDS-D-mesarthrocarpus_Contig10198:1225..1243Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10198 1226..1243 +
1680789162.7868528-CDS-D-mesarthrocarpus_Contig10198:1443..19471680789162.7868528-CDS-D-mesarthrocarpus_Contig10198:1443..1947Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10198 1444..1947 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10198.2.1prot_D-mesarthrocarpus_Contig10198.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10198 1226..1947 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10198.2.1

>prot_D-mesarthrocarpus_Contig10198.2.1 ID=prot_D-mesarthrocarpus_Contig10198.2.1|Name=mRNA_D-mesarthrocarpus_Contig10198.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=174bp
MVVACEVQDFSNFLRVPMVSNALLKWDATTSYPPHLSPSQEGKAADKTGG
GAGSVGPDSSAMEETLLSPHRPALSVEVEVHDAVLSISATAIQCLDQCIG
EMKKGSPSSLLAAALRPATQGGMPLPAPAATSAALASTSLARAPDDRAAD
LDVAVTPPHETPPHASVSQAEGKV
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mRNA from alignment at D-mesarthrocarpus_Contig10198:1218..1947+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10198.2.1 ID=mRNA_D-mesarthrocarpus_Contig10198.2.1|Name=mRNA_D-mesarthrocarpus_Contig10198.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=730bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10198:1218..1947+ (Discosporangium mesarthrocarpum MT17_79)
GTGGGAGCATGGTCGTGGCCTGTGAGGTGAGTGATGGAAAGGGGGGGGGG
GTATGATCCGGGTTTCTTTGTTACTGCGTTGCTCGCTCACAATGCTTGGG
GTCCAAGGCAGGCAGGCCATGGGGGCGCAAACATCAGGCAAGGCCTGGAC
ACAGACCTCCAGGGTAAACCAATTATTTTCCATGTGTGGCCTGCCCATCC
ACCTACCTGCATGCCCCTAACAACAGGTCCAAGATTTCTCGAATTTTCTG
CGGGTGCCTATGGTCTCCAACGCCCTTTTGAAGTGGGACGCCACCACCAG
CTACCCCCCCCACCTGTCACCAAGCCAAGAGGGCAAAGCCGCTGACAAAA
CCGGTGGGGGGGCTGGCAGCGTCGGGCCCGACAGCAGTGCCATGGAGGAG
ACGCTCCTGTCTCCTCACCGGCCGGCTCTGTCAGTGGAGGTGGAGGTGCA
TGACGCTGTGCTCAGCATATCTGCAACCGCCATCCAGTGCCTGGACCAGT
GCATCGGCGAGATGAAGAAGGGGTCTCCCTCATCCCTGCTGGCGGCGGCA
CTCCGTCCCGCCACCCAGGGTGGCATGCCCTTGCCTGCTCCTGCAGCGAC
CTCTGCGGCCCTTGCTTCGACCTCCTTAGCGCGGGCCCCCGATGATCGTG
CTGCTGATCTTGATGTGGCGGTGACCCCTCCACACGAGACACCACCCCAC
GCTTCAGTGTCACAGGCGGAGGGCAAGGTG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10198:1218..1947+

>mRNA_D-mesarthrocarpus_Contig10198.2.1 ID=mRNA_D-mesarthrocarpus_Contig10198.2.1|Name=mRNA_D-mesarthrocarpus_Contig10198.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=522bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10198:1218..1947+ (Discosporangium mesarthrocarpum MT17_79)
ATGGTCGTGGCCTGTGAGGTCCAAGATTTCTCGAATTTTCTGCGGGTGCC
TATGGTCTCCAACGCCCTTTTGAAGTGGGACGCCACCACCAGCTACCCCC
CCCACCTGTCACCAAGCCAAGAGGGCAAAGCCGCTGACAAAACCGGTGGG
GGGGCTGGCAGCGTCGGGCCCGACAGCAGTGCCATGGAGGAGACGCTCCT
GTCTCCTCACCGGCCGGCTCTGTCAGTGGAGGTGGAGGTGCATGACGCTG
TGCTCAGCATATCTGCAACCGCCATCCAGTGCCTGGACCAGTGCATCGGC
GAGATGAAGAAGGGGTCTCCCTCATCCCTGCTGGCGGCGGCACTCCGTCC
CGCCACCCAGGGTGGCATGCCCTTGCCTGCTCCTGCAGCGACCTCTGCGG
CCCTTGCTTCGACCTCCTTAGCGCGGGCCCCCGATGATCGTGCTGCTGAT
CTTGATGTGGCGGTGACCCCTCCACACGAGACACCACCCCACGCTTCAGT
GTCACAGGCGGAGGGCAAGGTG
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