mRNA_D-mesarthrocarpus_Contig10198.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10198.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10198.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10198.1.1 vs. uniprot
Match: A0A6H5KKG1_9PHAE (VPS13_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKG1_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 9.080e-7
Identity = 45/123 (36.59%), Postives = 58/123 (47.15%), Query Frame = 1 
Query:  277 EPSHPTLARVWRIRWRVPVWVQ-GPGGAGVKLSAADTHLVSSVLMAQLMVCSTPR---TATGRLSVTLGAQRVRVGLLTD-------------QAPSSSH---------LQPEEILRVVLTDV 567
            EPS P LAR WR+ WRVP W++    GAG           SS L+  L + S+P         +S TL AQR+ + LLT+              AP S           +QPEEI+RVV+ DV
Sbjct: 2532 EPSQPILARTWRLSWRVPSWLRFKAAGAGGAPKPPAISAWSSALLRTLSIRSSPSGPVVGPSYVSATLVAQRLTLALLTEGGAISRSSSXXXXXAPVSPSRRREGLGVFVQPEEIVRVVIADV 2654
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10198.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KKG1_9PHAE9.080e-736.59VPS13_C domain-containing protein n=2 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10198contigD-mesarthrocarpus_Contig10198:93..1171 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LBD2
Preferred nameVPS13B
PFAMsChorein_N,SHR-BD,VPS13,VPS13_C
Model size571
Max annot lvl2759|Eukaryota
KEGG koko:K19526
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0006605,GO:0006623,GO:0006810,GO:0006886,GO:0007034,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0016020,GO:0019898,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0044425,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0072594,GO:0072665,GO:0072666
Exons2
Evalue1e-10
EggNOG OGsCOG5043@1|root,KOG1809@2759|Eukaryota
Descriptionregulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
Cds size570
COG categoryU
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789162.7140236-CDS-D-mesarthrocarpus_Contig10198:92..2061680789162.7140236-CDS-D-mesarthrocarpus_Contig10198:92..206Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10198 93..206 +
1680789162.7268348-CDS-D-mesarthrocarpus_Contig10198:715..11711680789162.7268348-CDS-D-mesarthrocarpus_Contig10198:715..1171Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10198 716..1171 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10198.1.1prot_D-mesarthrocarpus_Contig10198.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10198 93..1171 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10198.1.1

>prot_D-mesarthrocarpus_Contig10198.1.1 ID=prot_D-mesarthrocarpus_Contig10198.1.1|Name=mRNA_D-mesarthrocarpus_Contig10198.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=190bp
RGAEEGVWLLVGEAGARIPLETVEVELSCLDPVTKRFELATRFTVHCDSI
WQPVTRFPCPKPESPSTAASAVASPPPLTTPTLGTSNTPSMCEPSHPTLA
RVWRIRWRVPVWVQGPGGAGVKLSAADTHLVSSVLMAQLMVCSTPRTATG
RLSVTLGAQRVRVGLLTDQAPSSSHLQPEEILRVVLTDVE
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mRNA from alignment at D-mesarthrocarpus_Contig10198:93..1171+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10198.1.1 ID=mRNA_D-mesarthrocarpus_Contig10198.1.1|Name=mRNA_D-mesarthrocarpus_Contig10198.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1079bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10198:93..1171+ (Discosporangium mesarthrocarpum MT17_79)
CGGGGCGCTGAGGAGGGTGTGTGGCTGTTGGTTGGGGAGGCTGGGGCGAG
GATTCCCCTGGAGACCGTGGAGGTGGAGCTGAGCTGCTTGGATCCTGTGA
CAAAGCGGTTTGAGGTGGGAAGTTTGGCCTTCACGTGGCTCTTTGTTTCC
CTTTGTACTTCGAAGTGGTATGCAAGGGGGTGCTGGCTACTTGTTTTCGT
TTTTTTCACCGGTGGCTTACGCTTTTTTGTTGTTAGCTGGTCTCGCGGCA
ACACCGACAAAATTGGGCTTGTTTGTATTCCTGAAGACAAGCGGGCATGG
GGTTTCTTTTTCTTGGGGGTTGCCAATATATATATATATATATTGTGCAT
ATGGCCCAGAGATGACCAAAACACGCAGGAACCTGGTACATTGGTAGTAG
ACATCAATGAAGTGATCGGTGAAGCTTTTGTTAGCCACCCCCCCAGTCCA
TGGGCATGATGAGACATTCCCTTGCAGGATTCACCCCACAGTGCCCAGAA
CAGACATAGGTGTGTAATGCGTGTCTTGCTTTTCACAGACCTGCCCCTCT
GATATATATGTATTTTTTTCCCTTCCGCCCCCTCTGCCTCTCCTGAAACC
GTCTCACACGGCCAACCCCACAGCTGGCCACCCGTTTCACCGTCCACTGT
GACAGCATTTGGCAACCCGTTACTCGATTCCCGTGCCCAAAGCCAGAATC
ACCCTCCACCGCTGCTAGCGCTGTGGCCTCTCCGCCTCCTTTGACCACCC
CCACACTGGGCACCAGCAACACTCCATCCATGTGTGAGCCATCCCACCCT
ACCCTGGCTCGGGTGTGGCGAATTCGCTGGAGAGTTCCCGTGTGGGTCCA
GGGCCCGGGGGGGGCGGGAGTGAAGCTCTCGGCTGCGGATACCCACCTGG
TCAGCTCTGTACTTATGGCGCAATTGATGGTGTGCTCGACACCGAGGACG
GCCACGGGGCGCTTGTCAGTGACCCTGGGGGCCCAGAGGGTGAGGGTCGG
GCTGCTGACTGACCAGGCGCCTTCCTCTTCCCACCTTCAGCCTGAGGAGA
TACTACGAGTGGTTCTGACTGATGTGGAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10198:93..1171+

>mRNA_D-mesarthrocarpus_Contig10198.1.1 ID=mRNA_D-mesarthrocarpus_Contig10198.1.1|Name=mRNA_D-mesarthrocarpus_Contig10198.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=570bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10198:93..1171+ (Discosporangium mesarthrocarpum MT17_79)
CGGGGCGCTGAGGAGGGTGTGTGGCTGTTGGTTGGGGAGGCTGGGGCGAG
GATTCCCCTGGAGACCGTGGAGGTGGAGCTGAGCTGCTTGGATCCTGTGA
CAAAGCGGTTTGAGCTGGCCACCCGTTTCACCGTCCACTGTGACAGCATT
TGGCAACCCGTTACTCGATTCCCGTGCCCAAAGCCAGAATCACCCTCCAC
CGCTGCTAGCGCTGTGGCCTCTCCGCCTCCTTTGACCACCCCCACACTGG
GCACCAGCAACACTCCATCCATGTGTGAGCCATCCCACCCTACCCTGGCT
CGGGTGTGGCGAATTCGCTGGAGAGTTCCCGTGTGGGTCCAGGGCCCGGG
GGGGGCGGGAGTGAAGCTCTCGGCTGCGGATACCCACCTGGTCAGCTCTG
TACTTATGGCGCAATTGATGGTGTGCTCGACACCGAGGACGGCCACGGGG
CGCTTGTCAGTGACCCTGGGGGCCCAGAGGGTGAGGGTCGGGCTGCTGAC
TGACCAGGCGCCTTCCTCTTCCCACCTTCAGCCTGAGGAGATACTACGAG
TGGTTCTGACTGATGTGGAG
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