mRNA_D-mesarthrocarpus_Contig9987.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9987.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig9987.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig9987.1.1 vs. uniprot
Match: D7FZK5_ECTSI (AP-3 complex subunit delta n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZK5_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 5.220e-18
Identity = 41/44 (93.18%), Postives = 43/44 (97.73%), Query Frame = 1 
Query:    1 GLVGFVNLMRSHPRAVAEHRELVLACLSDDDVTIRTRALELLSG 132
            GLVGFVNLMRSHPRAVAEHR LVLACLSDDD+TIRTRALELL+G
Sbjct:  315 GLVGFVNLMRSHPRAVAEHRALVLACLSDDDITIRTRALELLTG 358
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BLAST of mRNA_D-mesarthrocarpus_Contig9987.1.1 vs. uniprot
Match: A0A7S3ZNU4_9STRA (AP-3 complex subunit delta n=4 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZNU4_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.610e-16
Identity = 39/44 (88.64%), Postives = 41/44 (93.18%), Query Frame = 1 
Query:    1 GLVGFVNLMRSHPRAVAEHRELVLACLSDDDVTIRTRALELLSG 132
            GLVGFV LM+SHPRAV EHRELVL CLSDDDVTIRTRALELL+G
Sbjct:  315 GLVGFVELMKSHPRAVVEHRELVLLCLSDDDVTIRTRALELLTG 358
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BLAST of mRNA_D-mesarthrocarpus_Contig9987.1.1 vs. uniprot
Match: A0A835Z6U0_9STRA (Clathrin/coatomer adaptor, adaptin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6U0_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 2.130e-16
Identity = 39/44 (88.64%), Postives = 43/44 (97.73%), Query Frame = 1 
Query:    1 GLVGFVNLMRSHPRAVAEHRELVLACLSDDDVTIRTRALELLSG 132
            GLVG+VNLM+SHPRAVAE RELVLACL+DDDVTIRTRALELL+G
Sbjct:  315 GLVGYVNLMQSHPRAVAESRELVLACLTDDDVTIRTRALELLTG 358
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BLAST of mRNA_D-mesarthrocarpus_Contig9987.1.1 vs. uniprot
Match: F0YKL7_AURAN (Adaptin_N domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YKL7_AURAN)

HSP 1 Score: 79.0 bits (193), Expect = 1.040e-15
Identity = 37/44 (84.09%), Postives = 41/44 (93.18%), Query Frame = 1 
Query:    1 GLVGFVNLMRSHPRAVAEHRELVLACLSDDDVTIRTRALELLSG 132
            GLVGFV LM+SHP+AV EH+ELVL CLSDDDVTIRTRALELL+G
Sbjct:  306 GLVGFVELMKSHPKAVVEHKELVLLCLSDDDVTIRTRALELLTG 349
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BLAST of mRNA_D-mesarthrocarpus_Contig9987.1.1 vs. uniprot
Match: A0A7S2MSV1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MSV1_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.950e-15
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:    1 GLVGFVNLMRSHPRAVAEHRELVLACLSDDDVTIRTRALELLSG 132
            GLVGFV LMRSHPR V EH+ELVL+CLSDDDVTIR RALELL+G
Sbjct:  314 GLVGFVQLMRSHPRTVVEHKELVLSCLSDDDVTIRMRALELLTG 357
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BLAST of mRNA_D-mesarthrocarpus_Contig9987.1.1 vs. uniprot
Match: A0A7S1UJH6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UJH6_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 3.620e-15
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:    1 GLVGFVNLMRSHPRAVAEHRELVLACLSDDDVTIRTRALELLSG 132
            GLVGFV LMRSHPR+V  HRELVL CL+DDDVTIRTRALELL+G
Sbjct:  317 GLVGFVELMRSHPRSVMAHRELVLRCLNDDDVTIRTRALELLTG 360
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BLAST of mRNA_D-mesarthrocarpus_Contig9987.1.1 vs. uniprot
Match: W7TQ06_9STRA (Ap-3 complex subunit delta-1 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQ06_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 6.790e-15
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:    1 GLVGFVNLMRSHPRAVAEHRELVLACLSDDDVTIRTRALELLSG 132
            GLVGFVNLM+S PRAV EH+ELVL CLSDDDVTIR RALELL+G
Sbjct:  317 GLVGFVNLMKSFPRAVVEHKELVLLCLSDDDVTIRMRALELLTG 360
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BLAST of mRNA_D-mesarthrocarpus_Contig9987.1.1 vs. uniprot
Match: A0A4D9D9W4_9STRA (Adaptin_N domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D9W4_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 6.810e-15
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:    1 GLVGFVNLMRSHPRAVAEHRELVLACLSDDDVTIRTRALELLSG 132
            GLVGFVNLM+S PRAV EH+ELVL CLSDDDVTIR RALELL+G
Sbjct:  317 GLVGFVNLMKSFPRAVVEHKELVLLCLSDDDVTIRMRALELLTG 360
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BLAST of mRNA_D-mesarthrocarpus_Contig9987.1.1 vs. uniprot
Match: A0A7R9YB97_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YB97_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 9.270e-15
Identity = 36/44 (81.82%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:    1 GLVGFVNLMRSHPRAVAEHRELVLACLSDDDVTIRTRALELLSG 132
            GLVGFV LMRSHPRAV  H++LV+ CLSDDDVTIRTRALELL+G
Sbjct:  314 GLVGFVELMRSHPRAVMAHQDLVMRCLSDDDVTIRTRALELLTG 357
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BLAST of mRNA_D-mesarthrocarpus_Contig9987.1.1 vs. uniprot
Match: A0A2R5GHQ5_9STRA (AP-3 complex subunit delta n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GHQ5_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.270e-14
Identity = 35/44 (79.55%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:    1 GLVGFVNLMRSHPRAVAEHRELVLACLSDDDVTIRTRALELLSG 132
            GLVG VNLMRSHPR VAEH+E+VL CL DDDVT+R RALELL+G
Sbjct:  315 GLVGLVNLMRSHPRVVAEHKEMVLQCLMDDDVTVRMRALELLTG 358
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9987.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZK5_ECTSI5.220e-1893.18AP-3 complex subunit delta n=2 Tax=Ectocarpus TaxI... [more]
A0A7S3ZNU4_9STRA1.610e-1688.64AP-3 complex subunit delta n=4 Tax=Pelagomonas cal... [more]
A0A835Z6U0_9STRA2.130e-1688.64Clathrin/coatomer adaptor, adaptin-like protein n=... [more]
F0YKL7_AURAN1.040e-1584.09Adaptin_N domain-containing protein (Fragment) n=1... [more]
A0A7S2MSV1_9STRA1.950e-1584.09Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S1UJH6_9STRA3.620e-1584.09Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
W7TQ06_9STRA6.790e-1584.09Ap-3 complex subunit delta-1 n=2 Tax=Nannochlorops... [more]
A0A4D9D9W4_9STRA6.810e-1584.09Adaptin_N domain-containing protein n=1 Tax=Nannoc... [more]
A0A7R9YB97_9STRA9.270e-1581.82Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A2R5GHQ5_9STRA1.270e-1479.55AP-3 complex subunit delta n=1 Tax=Hondaea ferment... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9987contigD-mesarthrocarpus_Contig9987:874..1053 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FZK5
Preferred nameAP3D1
PFAMsAP3D1,Adaptin_N
Model size180
Max annot lvl2759|Eukaryota
KEGG koko:K12396
KEGG Pathwayko04142,map04142
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000041,GO:0002376,GO:0002475,GO:0002682,GO:0002684,GO:0002694,GO:0002696,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005770,GO:0005783,GO:0005794,GO:0005795,GO:0005798,GO:0005802,GO:0006725,GO:0006726,GO:0006727,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006829,GO:0006886,GO:0006887,GO:0006892,GO:0006895,GO:0006897,GO:0006900,GO:0006903,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007032,GO:0007033,GO:0007034,GO:0007040,GO:0007041,GO:0007220,GO:0007275,GO:0007568,GO:0008055,GO:0008057,GO:0008088,GO:0008089,GO:0008104,GO:0008150,GO:0008152,GO:0008333,GO:0008340,GO:0008565,GO:0009058,GO:0009605,GO:0009893,GO:0009987,GO:0010008,GO:0010256,GO:0010259,GO:0010468,GO:0010604,GO:0010628,GO:0010970,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016182,GO:0016192,GO:0016197,GO:0016482,GO:0018130,GO:0019222,GO:0019438,GO:0019538,GO:0019748,GO:0019882,GO:0019884,GO:0021700,GO:0022407,GO:0022409,GO:0030001,GO:0030117,GO:0030119,GO:0030123,GO:0030154,GO:0030155,GO:0030424,GO:0030705,GO:0031090,GO:0031410,GO:0031503,GO:0031982,GO:0031984,GO:0032438,GO:0032501,GO:0032502,GO:0032594,GO:0032879,GO:0032940,GO:0032991,GO:0033036,GO:0033059,GO:0033060,GO:0033267,GO:0033365,GO:0034613,GO:0035646,GO:0036465,GO:0036466,GO:0042440,GO:0042441,GO:0042592,GO:0042886,GO:0042995,GO:0043005,GO:0043170,GO:0043195,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043324,GO:0043473,GO:0043474,GO:0043476,GO:0043482,GO:0043485,GO:0043679,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044306,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044456,GO:0044463,GO:0044464,GO:0044550,GO:0045184,GO:0045202,GO:0045580,GO:0045582,GO:0045595,GO:0045597,GO:0045619,GO:0045621,GO:0045785,GO:0046148,GO:0046152,GO:0046158,GO:0046483,GO:0046634,GO:0046635,GO:0046637,GO:0046638,GO:0046903,GO:0046907,GO:0047496,GO:0048003,GO:0048007,GO:0048066,GO:0048069,GO:0048072,GO:0048193,GO:0048475,GO:0048489,GO:0048490,GO:0048499,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048753,GO:0048757,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050793,GO:0050794,GO:0050801,GO:0050863,GO:0050865,GO:0050867,GO:0050870,GO:0050896,GO:0050931,GO:0051094,GO:0051136,GO:0051138,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051249,GO:0051251,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051668,GO:0051716,GO:0060255,GO:0060966,GO:0060967,GO:0060968,GO:0060969,GO:0061024,GO:0061088,GO:0061462,GO:0065007,GO:0065008,GO:0070142,GO:0070727,GO:0070838,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072384,GO:0072511,GO:0072594,GO:0072657,GO:0072665,GO:0072666,GO:0080171,GO:0097458,GO:0097479,GO:0097480,GO:0097708,GO:0098588,GO:0098657,GO:0098791,GO:0098793,GO:0098796,GO:0098805,GO:0098830,GO:0098930,GO:0098943,GO:0099003,GO:0099111,GO:0099504,GO:0099514,GO:0099517,GO:0099518,GO:0099532,GO:0099632,GO:0099637,GO:0120025,GO:0120038,GO:0150034,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1902105,GO:1902107,GO:1903037,GO:1903039,GO:1903706,GO:1903708,GO:1990019,GO:2000026
Exons1
Evalue2.16e-13
EggNOG OGsCOG4354@1|root,KOG1059@2759|Eukaryota
Descriptionintracellular protein transport
Cds size156
COG categoryU
BRITEko00000,ko00001,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791147.8564186-UTR-D-mesarthrocarpus_Contig9987:873..8971680791147.8564186-UTR-D-mesarthrocarpus_Contig9987:873..897Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9987 874..897 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791147.8702877-CDS-D-mesarthrocarpus_Contig9987:897..10531680791147.8702877-CDS-D-mesarthrocarpus_Contig9987:897..1053Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9987 898..1053 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9987.1.1prot_D-mesarthrocarpus_Contig9987.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9987 898..1053 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9987.1.1

>prot_D-mesarthrocarpus_Contig9987.1.1 ID=prot_D-mesarthrocarpus_Contig9987.1.1|Name=mRNA_D-mesarthrocarpus_Contig9987.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=52bp
MRSHPRAVAEHRELVLACLSDDDVTIRTRALELLSGAGGGNNAYMPNWIL
F*
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mRNA from alignment at D-mesarthrocarpus_Contig9987:874..1053+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9987.1.1 ID=mRNA_D-mesarthrocarpus_Contig9987.1.1|Name=mRNA_D-mesarthrocarpus_Contig9987.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=180bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9987:874..1053+ (Discosporangium mesarthrocarpum MT17_79)
GGGCTTGTGGGGTTTGTGAACCTGATGCGGTCTCACCCAAGAGCAGTGGC
GGAACACAGAGAGCTGGTGCTGGCCTGCCTCTCAGACGATGATGTCACCA
TCCGGACAAGGGCTTTGGAATTGCTGTCAGGTGCAGGGGGGGGGAATAAT
GCATATATGCCTAACTGGATACTATTCTAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9987:874..1053+

>mRNA_D-mesarthrocarpus_Contig9987.1.1 ID=mRNA_D-mesarthrocarpus_Contig9987.1.1|Name=mRNA_D-mesarthrocarpus_Contig9987.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=156bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9987:874..1053+ (Discosporangium mesarthrocarpum MT17_79)
ATGCGGTCTCACCCAAGAGCAGTGGCGGAACACAGAGAGCTGGTGCTGGC
CTGCCTCTCAGACGATGATGTCACCATCCGGACAAGGGCTTTGGAATTGC
TGTCAGGTGCAGGGGGGGGGAATAATGCATATATGCCTAACTGGATACTA
TTCTAG
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