mRNA_D-mesarthrocarpus_Contig9968.3.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9968.3.1
Unique NamemRNA_D-mesarthrocarpus_Contig9968.3.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9968.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9968contigD-mesarthrocarpus_Contig9968:2939..3459 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size522
Hectar predicted targeting categoryother localisation
Exons1
Cds size519
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791146.4250078-CDS-D-mesarthrocarpus_Contig9968:2938..34571680791146.4250078-CDS-D-mesarthrocarpus_Contig9968:2938..3457Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9968 2939..3457 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9968.3.1prot_D-mesarthrocarpus_Contig9968.3.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9968 2939..3457 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9968.3.1

>prot_D-mesarthrocarpus_Contig9968.3.1 ID=prot_D-mesarthrocarpus_Contig9968.3.1|Name=mRNA_D-mesarthrocarpus_Contig9968.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=173bp
APAPAPAQAGVVKKSAKVCRFFGKPEGCRTGLDCQFIHAQVGVTTPAALV
ATTEAPRPVPVPVPVPAVAVAAPAPVIAHAPAGHHTQVSKKRARVAMATL
APAEPAPAPIPAPAPASAPAKCSPPSTLVAPVVNGCETGAGAGAGAEEER
ENTCALLADLPVKVFVKPPVKPA
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mRNA from alignment at D-mesarthrocarpus_Contig9968:2939..3459+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9968.3.1 ID=mRNA_D-mesarthrocarpus_Contig9968.3.1|Name=mRNA_D-mesarthrocarpus_Contig9968.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=521bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9968:2939..3459+ (Discosporangium mesarthrocarpum MT17_79)
GCTCCAGCTCCAGCCCCAGCCCAGGCTGGGGTGGTGAAGAAGTCCGCGAA
AGTTTGCAGGTTCTTTGGAAAGCCTGAAGGGTGCAGGACTGGTCTGGATT
GCCAGTTCATCCACGCTCAGGTGGGGGTGACCACTCCTGCAGCACTGGTA
GCAACAACGGAGGCCCCACGGCCGGTACCTGTGCCTGTGCCTGTGCCGGC
AGTGGCAGTTGCAGCACCTGCACCAGTTATTGCTCATGCACCAGCTGGGC
ATCACACACAGGTTTCAAAGAAACGCGCGCGGGTGGCAATGGCTACGCTA
GCTCCAGCAGAACCTGCACCCGCGCCTATCCCTGCCCCTGCCCCTGCCTC
TGCCCCTGCCAAATGTTCCCCTCCCTCCACCTTGGTAGCTCCAGTAGTGA
ACGGATGCGAGACAGGGGCAGGGGCAGGGGCAGGGGCTGAGGAGGAGAGG
GAAAACACATGCGCATTGCTGGCGGATCTTCCTGTGAAGGTGTTTGTGAA
ACCGCCCGTGAAGCCTGCTCC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9968:2939..3459+

>mRNA_D-mesarthrocarpus_Contig9968.3.1 ID=mRNA_D-mesarthrocarpus_Contig9968.3.1|Name=mRNA_D-mesarthrocarpus_Contig9968.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=519bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9968:2939..3459+ (Discosporangium mesarthrocarpum MT17_79)
GCTCCAGCTCCAGCCCCAGCCCAGGCTGGGGTGGTGAAGAAGTCCGCGAA
AGTTTGCAGGTTCTTTGGAAAGCCTGAAGGGTGCAGGACTGGTCTGGATT
GCCAGTTCATCCACGCTCAGGTGGGGGTGACCACTCCTGCAGCACTGGTA
GCAACAACGGAGGCCCCACGGCCGGTACCTGTGCCTGTGCCTGTGCCGGC
AGTGGCAGTTGCAGCACCTGCACCAGTTATTGCTCATGCACCAGCTGGGC
ATCACACACAGGTTTCAAAGAAACGCGCGCGGGTGGCAATGGCTACGCTA
GCTCCAGCAGAACCTGCACCCGCGCCTATCCCTGCCCCTGCCCCTGCCTC
TGCCCCTGCCAAATGTTCCCCTCCCTCCACCTTGGTAGCTCCAGTAGTGA
ACGGATGCGAGACAGGGGCAGGGGCAGGGGCAGGGGCTGAGGAGGAGAGG
GAAAACACATGCGCATTGCTGGCGGATCTTCCTGTGAAGGTGTTTGTGAA
ACCGCCCGTGAAGCCTGCT
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