mRNA_D-mesarthrocarpus_Contig9968.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9968.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig9968.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9968.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9968contigD-mesarthrocarpus_Contig9968:135..1379 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size462
Hectar predicted targeting categorymitochondrion
Exons2
Cds size354
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791146.3207161-CDS-D-mesarthrocarpus_Contig9968:134..4881680791146.3207161-CDS-D-mesarthrocarpus_Contig9968:134..488Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9968 135..488 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791146.331817-UTR-D-mesarthrocarpus_Contig9968:488..5011680791146.331817-UTR-D-mesarthrocarpus_Contig9968:488..501Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9968 489..501 -
1680791146.342267-UTR-D-mesarthrocarpus_Contig9968:1286..13791680791146.342267-UTR-D-mesarthrocarpus_Contig9968:1286..1379Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9968 1287..1379 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9968.1.1prot_D-mesarthrocarpus_Contig9968.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9968 135..488 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9968.1.1

>prot_D-mesarthrocarpus_Contig9968.1.1 ID=prot_D-mesarthrocarpus_Contig9968.1.1|Name=mRNA_D-mesarthrocarpus_Contig9968.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=118bp
MSIGSARALALRAAAGASRRRSFLFNPLQALPASRAHPAQALSSVGGGPD
AESGALVTTKGGSWSLSPIAANGTGATAGAAEAPGGDPPGKEAGMKFGWR
AGGEGEGGSALGLDSLIQ
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mRNA from alignment at D-mesarthrocarpus_Contig9968:135..1379-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9968.1.1 ID=mRNA_D-mesarthrocarpus_Contig9968.1.1|Name=mRNA_D-mesarthrocarpus_Contig9968.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1245bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9968:135..1379- (Discosporangium mesarthrocarpum MT17_79)
TCCCAGCTAGATATATTGGTAAAGGGTTGTGGAGGGGGGTGCATCCCCGG
AGAAGGACACCCTCACGTCCATTGTGACTTAAGCTATTGAAAGGTGTGGT
GACAGACAACTACCCTTGTTCAGAGTTTTACTCATCCTTGCTTGTGCAAA
CGCTGTGTTGACTTTTTAGCAATGGCTCCCGTTGAGTCTTTTTGCCAATC
TTTACCTTTGCAACATCGATGAACAATGCTGTGAGGCTTGCCTCGTATAG
GTGGATGAGGGATTTCTCATGTTCTTGTGGATCGAGTCGATCTGCAAGGT
GCGGCAGCCTTTCCCATGAGGTGTACCCTTAGTTTAAGTCCTCCGCCCAT
AGGCCGAAGTTGCAACATCTAAACGTGGTGGAAGTCTTTGCCTTGTTGTG
TGGGGCAGAATGCATGGACTGGGGCAGAAGACCATGTTACACACTGTGCA
AAGCCTAATTTAAGGTCGCACGAGGATTCAGGTGGCCTCGGTAGCTAGCC
ACCTTCCACGTGCAGAACCCACTTCAATGTTCTGGGGATAATTGAACCTT
TGATGAAAGGTATCAATGGTTCTCGAATAACGAGTTCCCCTTGGTCACAA
TAACTAGAGTTTTGGGTGGGGGGGCAACAATCTCGATCCCAGACTGCACA
TGCACATCGAACCCAAAACAGAAAGTTGGAAACCTCGGCATGGAAGAACT
ACGCGTGAACGTGGTGGTGGCGGTCCCCACCATTTCCCCACACGGCACAC
CCCAATCGTCCCTACGAAGGCATGATAGCAAAAAAATACCCCCCGATACC
TGTTGGTCTTTGCTCGTTCACCGCCTGCGTGGCCCCCCTCCCTGCCGCAT
CCCCACTCCTCGATAATACACCCGCCAGGACCGACGGAGGCATGTCCATC
GGGTCAGCCAGAGCCCTGGCCCTTCGGGCAGCGGCTGGAGCCTCCCGCCG
GCGCTCCTTCCTCTTCAACCCCTTGCAGGCCCTGCCTGCATCCCGTGCGC
ATCCCGCGCAAGCGTTGTCCTCCGTCGGGGGCGGACCTGACGCCGAGTCA
GGTGCCCTGGTCACAACGAAGGGGGGCAGCTGGAGCTTGAGCCCCATAGC
CGCCAACGGCACCGGGGCCACTGCTGGGGCGGCTGAAGCTCCAGGGGGTG
ACCCGCCGGGTAAGGAGGCCGGGATGAAGTTCGGGTGGAGGGCAGGAGGG
GAAGGGGAAGGGGGGTCAGCCTTGGGTCTGGACTCATTGATACAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9968:135..1379-

>mRNA_D-mesarthrocarpus_Contig9968.1.1 ID=mRNA_D-mesarthrocarpus_Contig9968.1.1|Name=mRNA_D-mesarthrocarpus_Contig9968.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=354bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9968:135..1379- (Discosporangium mesarthrocarpum MT17_79)
ATGTCCATCGGGTCAGCCAGAGCCCTGGCCCTTCGGGCAGCGGCTGGAGC
CTCCCGCCGGCGCTCCTTCCTCTTCAACCCCTTGCAGGCCCTGCCTGCAT
CCCGTGCGCATCCCGCGCAAGCGTTGTCCTCCGTCGGGGGCGGACCTGAC
GCCGAGTCAGGTGCCCTGGTCACAACGAAGGGGGGCAGCTGGAGCTTGAG
CCCCATAGCCGCCAACGGCACCGGGGCCACTGCTGGGGCGGCTGAAGCTC
CAGGGGGTGACCCGCCGGGTAAGGAGGCCGGGATGAAGTTCGGGTGGAGG
GCAGGAGGGGAAGGGGAAGGGGGGTCAGCCTTGGGTCTGGACTCATTGAT
ACAG
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