mRNA_D-mesarthrocarpus_Contig9938.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9938.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig9938.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig9938.1.1 vs. uniprot
Match: D7FSB3_ECTSI (PCIF1_WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSB3_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 1.350e-18
Identity = 42/61 (68.85%), Postives = 47/61 (77.05%), Query Frame = 1
Query:   13 RQGSFEANPPFVEEVMVSMVDSMHVLLDASAAPMSLAVIVPGWDNDRCRSYSDMKTSDYAR 195
            +QGSFEANPPFVEEVM  MVD MH LL  +  PMS AVIVPGWD+D C SY +MK S +AR
Sbjct:  490 QQGSFEANPPFVEEVMERMVDHMHHLLRRATGPMSFAVIVPGWDDDGCVSYQNMKNSRFAR 550          
BLAST of mRNA_D-mesarthrocarpus_Contig9938.1.1 vs. uniprot
Match: A0A6H5KCM6_9PHAE (PCIF1_WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCM6_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 2.180e-16
Identity = 37/56 (66.07%), Postives = 42/56 (75.00%), Query Frame = 1
Query:   28 EANPPFVEEVMVSMVDSMHVLLDASAAPMSLAVIVPGWDNDRCRSYSDMKTSDYAR 195
            +ANPPFVEEVM  MVD MH LL  +  PMS AVIVPGWD+D C SY +MK S +AR
Sbjct:  115 QANPPFVEEVMERMVDHMHYLLRRATGPMSFAVIVPGWDDDGCLSYQNMKNSRFAR 170          
BLAST of mRNA_D-mesarthrocarpus_Contig9938.1.1 vs. uniprot
Match: A0A061R6E1_9CHLO (Phosphorylated CTD-interacting factor 1 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061R6E1_9CHLO)

HSP 1 Score: 72.8 bits (177), Expect = 1.880e-13
Identity = 33/60 (55.00%), Postives = 41/60 (68.33%), Query Frame = 1
Query:   16 QGSFEANPPFVEEVMVSMVDSMHVLLDASAAPMSLAVIVPGWDNDRCRSYSDMKTSDYAR 195
            +GSFEANPPFVE+ M   +  +  LLDAS +P+S  VIVPGWD+D C SY   K S + R
Sbjct:  425 EGSFEANPPFVEDTMTDNIRHIEKLLDASTSPLSFVVIVPGWDDDGCESYQLTKRSKFLR 484          
BLAST of mRNA_D-mesarthrocarpus_Contig9938.1.1 vs. uniprot
Match: A0A7S1WY89_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1WY89_9CHLO)

HSP 1 Score: 67.4 bits (163), Expect = 4.060e-13
Identity = 30/53 (56.60%), Postives = 38/53 (71.70%), Query Frame = 1
Query:    7 RARQGSFEANPPFVEEVMVSMVDSMHVLLDASAAPMSLAVIVPGWDNDRCRSY 165
            R ++GSFEANPPF+E+ M   V  +  LL ASA P+S  V+VPGWD+D C SY
Sbjct:    8 RPKEGSFEANPPFLEDTMTDNVRHILDLLAASALPLSFVVVVPGWDDDTCESY 60          
BLAST of mRNA_D-mesarthrocarpus_Contig9938.1.1 vs. uniprot
Match: A0A2E0ILZ6_9HYPH (PCIF1_WW domain-containing protein n=1 Tax=Ahrensia sp. TaxID=1872419 RepID=A0A2E0ILZ6_9HYPH)

HSP 1 Score: 62.0 bits (149), Expect = 3.730e-11
Identity = 31/66 (46.97%), Postives = 41/66 (62.12%), Query Frame = 1
Query:    7 RARQGSFEANPPFVEEVMVSMVDSMHVLLDASAA---PMSLAVIVPGWDNDRCRSYSDMKTSDYAR 195
            R   GSFE+NPPFV +VM + V  +  LLDA+A    P+S  ++VP WD+D+C SY     S Y R
Sbjct:    8 RPSTGSFESNPPFVNDVMTANVKHIVGLLDAAATSKKPLSFIIVVPAWDDDKCESYQITIQSRYLR 73          
BLAST of mRNA_D-mesarthrocarpus_Contig9938.1.1 vs. uniprot
Match: A0A7S1X499_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1X499_9CHLO)

HSP 1 Score: 55.8 bits (133), Expect = 1.730e-7
Identity = 25/46 (54.35%), Postives = 31/46 (67.39%), Query Frame = 1
Query:    7 RARQGSFEANPPFVEEVMVSMVDSMHVLLDASAAPMSLAVIVPGWD 144
            R   GSFEANPPFV EVM +MV  M  LL  ++ P+S  VI+P W+
Sbjct:  280 RPTSGSFEANPPFVPEVMSAMVGHMETLLARASGPLSFTVIIPAWE 325          
BLAST of mRNA_D-mesarthrocarpus_Contig9938.1.1 vs. uniprot
Match: G3NGA1_GASAC (PDX1 C-terminal inhibiting factor 1 n=5 Tax=Percomorphaceae TaxID=1489872 RepID=G3NGA1_GASAC)

HSP 1 Score: 55.5 bits (132), Expect = 2.420e-7
Identity = 29/63 (46.03%), Postives = 37/63 (58.73%), Query Frame = 1
Query:    7 RARQGSFEANPPFVEEVMVSMVDSMHVLLDASAAPMSLAVIVPGWDNDRCRSYSDMKTSDYAR 195
            R   GSFEANPPF EE+M +MV     LLD S+ P+S  V VP W N    + + M+ S + R
Sbjct:  544 RPVSGSFEANPPFCEELMDAMVAHFEELLDKSSEPLSFIVFVPEWRNPVTPALTRMEASRFLR 606          
BLAST of mRNA_D-mesarthrocarpus_Contig9938.1.1 vs. uniprot
Match: UPI001A99DDB1 (mRNA (2'-O-methyladenosine-N(6)-)-methyltransferase n=2 Tax=Gasterosteidae TaxID=69291 RepID=UPI001A99DDB1)

HSP 1 Score: 55.5 bits (132), Expect = 2.430e-7
Identity = 29/63 (46.03%), Postives = 37/63 (58.73%), Query Frame = 1
Query:    7 RARQGSFEANPPFVEEVMVSMVDSMHVLLDASAAPMSLAVIVPGWDNDRCRSYSDMKTSDYAR 195
            R   GSFEANPPF EE+M +MV     LLD S+ P+S  V VP W N    + + M+ S + R
Sbjct:  542 RPVSGSFEANPPFCEELMDAMVAHFEELLDKSSEPLSFIVFVPEWRNPVTPALTRMEASRFLR 604          
BLAST of mRNA_D-mesarthrocarpus_Contig9938.1.1 vs. uniprot
Match: A0A1I8FGD7_9PLAT (PCIF1_WW domain-containing protein n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8FGD7_9PLAT)

HSP 1 Score: 54.7 bits (130), Expect = 3.600e-7
Identity = 26/60 (43.33%), Postives = 37/60 (61.67%), Query Frame = 1
Query:   16 QGSFEANPPFVEEVMVSMVDSMHVLLDASAAPMSLAVIVPGWDNDRCRSYSDMKTSDYAR 195
            +GSFEANPPF EE+MV+MV+ M  LL  +  P+S  V +P W +    +   ++ S Y R
Sbjct:  152 EGSFEANPPFSEELMVAMVNHMENLLKEATGPLSFMVFLPDWRDPPTEALVRLEASPYNR 211          
BLAST of mRNA_D-mesarthrocarpus_Contig9938.1.1 vs. uniprot
Match: A0A6F9DNZ3_9ASCI (Phosphorylated CTD-interacting factor 1-like n=1 Tax=Phallusia mammillata TaxID=59560 RepID=A0A6F9DNZ3_9ASCI)

HSP 1 Score: 54.7 bits (130), Expect = 4.490e-7
Identity = 27/60 (45.00%), Postives = 37/60 (61.67%), Query Frame = 1
Query:   16 QGSFEANPPFVEEVMVSMVDSMHVLLDASAAPMSLAVIVPGWDNDRCRSYSDMKTSDYAR 195
            QGSFEANPPF EE+M +MV+    LL  S +P+S  + +P W +    S   M++S Y R
Sbjct:  388 QGSFEANPPFCEELMEAMVEHFEKLLAQSNSPLSFIIFIPEWRDPTPLSILRMESSRYKR 447          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9938.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSB3_ECTSI1.350e-1868.85PCIF1_WW domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KCM6_9PHAE2.180e-1666.07PCIF1_WW domain-containing protein n=1 Tax=Ectocar... [more]
A0A061R6E1_9CHLO1.880e-1355.00Phosphorylated CTD-interacting factor 1 n=1 Tax=Te... [more]
A0A7S1WY89_9CHLO4.060e-1356.60Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
A0A2E0ILZ6_9HYPH3.730e-1146.97PCIF1_WW domain-containing protein n=1 Tax=Ahrensi... [more]
A0A7S1X499_9CHLO1.730e-754.35Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
G3NGA1_GASAC2.420e-746.03PDX1 C-terminal inhibiting factor 1 n=5 Tax=Percom... [more]
UPI001A99DDB12.430e-746.03mRNA (2'-O-methyladenosine-N(6)-)-methyltransferas... [more]
A0A1I8FGD7_9PLAT3.600e-743.33PCIF1_WW domain-containing protein n=1 Tax=Macrost... [more]
A0A6F9DNZ3_9ASCI4.490e-745.00Phosphorylated CTD-interacting factor 1-like n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9938contigD-mesarthrocarpus_Contig9938:2952..3146 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FSB3
Preferred namePCIF1
PFAMsPCIF1_WW,WW
Model size195
Max annot lvl2759|Eukaryota
KEGG koko:K17584
Hectar predicted targeting categoryother localisation
GOsGO:0003002,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005856,GO:0007275,GO:0007389,GO:0007444,GO:0007447,GO:0007450,GO:0008150,GO:0009888,GO:0009892,GO:0009953,GO:0010563,GO:0010921,GO:0010923,GO:0015630,GO:0019220,GO:0019222,GO:0031323,GO:0031324,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0035220,GO:0035222,GO:0035295,GO:0035303,GO:0035305,GO:0043086,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044092,GO:0044421,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045171,GO:0045936,GO:0048190,GO:0048513,GO:0048519,GO:0048523,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0051174,GO:0051336,GO:0051346,GO:0060429,GO:0065007,GO:0065009,GO:0070013
Exons1
Evalue2.21e-19
EggNOG OGs28P6D@1|root,2QVT7@2759|Eukaryota
Descriptionnegative regulation of phosphatase activity
Cds size195
COG categoryA
BRITEko00000,ko01009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791143.7425835-CDS-D-mesarthrocarpus_Contig9938:2951..31461680791143.7425835-CDS-D-mesarthrocarpus_Contig9938:2951..3146Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9938 2952..3146 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9938.1.1prot_D-mesarthrocarpus_Contig9938.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9938 2952..3146 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9938.1.1

>prot_D-mesarthrocarpus_Contig9938.1.1 ID=prot_D-mesarthrocarpus_Contig9938.1.1|Name=mRNA_D-mesarthrocarpus_Contig9938.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=65bp
MGRARQGSFEANPPFVEEVMVSMVDSMHVLLDASAAPMSLAVIVPGWDND
RCRSYSDMKTSDYAR
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mRNA from alignment at D-mesarthrocarpus_Contig9938:2952..3146+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9938.1.1 ID=mRNA_D-mesarthrocarpus_Contig9938.1.1|Name=mRNA_D-mesarthrocarpus_Contig9938.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=195bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9938:2952..3146+ (Discosporangium mesarthrocarpum MT17_79)
ATGGGTCGTGCGCGTCAAGGATCGTTCGAGGCCAACCCCCCCTTTGTGGA GGAAGTGATGGTGAGCATGGTGGACAGCATGCACGTTCTCCTGGACGCCT CGGCGGCGCCTATGTCCCTTGCTGTGATCGTTCCGGGCTGGGACAACGAC AGGTGCAGGAGCTACTCAGACATGAAGACCAGCGACTATGCCAGG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9938:2952..3146+

>mRNA_D-mesarthrocarpus_Contig9938.1.1 ID=mRNA_D-mesarthrocarpus_Contig9938.1.1|Name=mRNA_D-mesarthrocarpus_Contig9938.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=195bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9938:2952..3146+ (Discosporangium mesarthrocarpum MT17_79)
ATGGGTCGTGCGCGTCAAGGATCGTTCGAGGCCAACCCCCCCTTTGTGGA
GGAAGTGATGGTGAGCATGGTGGACAGCATGCACGTTCTCCTGGACGCCT
CGGCGGCGCCTATGTCCCTTGCTGTGATCGTTCCGGGCTGGGACAACGAC
AGGTGCAGGAGCTACTCAGACATGAAGACCAGCGACTATGCCAGG
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