mRNA_D-mesarthrocarpus_Contig986.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig986.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig986.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig986.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig986contigD-mesarthrocarpus_Contig986:284..1629 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size691
Hectar predicted targeting categoryother localisation
Exons2
Cds size489
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791136.7464724-UTR-D-mesarthrocarpus_Contig986:283..3921680791136.7464724-UTR-D-mesarthrocarpus_Contig986:283..392Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig986 284..392 +
1680791136.7886112-UTR-D-mesarthrocarpus_Contig986:1536..16291680791136.7886112-UTR-D-mesarthrocarpus_Contig986:1536..1629Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig986 1537..1629 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791136.7610703-CDS-D-mesarthrocarpus_Contig986:392..5721680791136.7610703-CDS-D-mesarthrocarpus_Contig986:392..572Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig986 393..572 +
1680791136.773163-CDS-D-mesarthrocarpus_Contig986:1227..15361680791136.773163-CDS-D-mesarthrocarpus_Contig986:1227..1536Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig986 1228..1536 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig986.1.1prot_D-mesarthrocarpus_Contig986.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig986 393..1536 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig986.1.1

>prot_D-mesarthrocarpus_Contig986.1.1 ID=prot_D-mesarthrocarpus_Contig986.1.1|Name=mRNA_D-mesarthrocarpus_Contig986.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=163bp
MGQGVPSMECGERVEDSVLEAGAEVLMATAPAGDRGGGMEDVVKFFEGIV
TPEDMVPSINELGPSGNPVQGFGLSAPGPATPIEGGTPRQTAYSDKAKGY
RVKGPFSRLRDWVKRDFSNSPPRAKRSPGDRDGGGGGGVDVLPPRGRRGL
RFGGQKKGRKGK*
back to top

mRNA from alignment at D-mesarthrocarpus_Contig986:284..1629+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig986.1.1 ID=mRNA_D-mesarthrocarpus_Contig986.1.1|Name=mRNA_D-mesarthrocarpus_Contig986.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1346bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig986:284..1629+ (Discosporangium mesarthrocarpum MT17_79)
GGAAGCAATTGGGGAAGAGGAAAGGGTGAGGGATGGCAAGGAAGTTGTCT
CTGTGGGTGAAGGTGGAGCAACACGGGTGAGGGAACATGAGGAGGATGCT
GGCAGTCATATGGGCCAAGGGGTACCTTCCATGGAATGTGGGGAGAGGGT
TGAGGACTCAGTCCTGGAGGCGGGGGCAGAAGTTCTGATGGCCACTGCGC
CTGCTGGGGACAGGGGTGGGGGCATGGAAGATGTGGTCAAATTCTTCGAG
GGCATCGTCACCCCAGAGGACATGGTCCCCTCCATCAACGTGGGTTTTGT
CCGTGTTTTTTTTTTTATTCTTTGGTGTGTTTAGTTTGGGTGAAAGTAAG
ACTGTGCTGGCCACAAGGGGGGGGGGAATACGACAGGCATTTGTTAGTCT
TTTTTTTAGGACGGATTTGTTTTGGCTGTGTTTTCAGGGTGGGGTGGGGA
GGCGGGGGGGTGGGTCACCGTGATGCGTAGTGTTGGTTTTGCTTGAATTG
CAATCTCGGCTCTCTGGCTTCTTGGATGGGGGATCGTGGATGCTTTCGTG
GTGGGGGTTGAAAAGATTCTTGTTGTTGGTTTTTATTTTGATTGTGGTGT
GTGTGTGTGGTGCCTGTTGGTTCTTCATTGCTTCTCACTTCTGCAACTGA
TCAGATTGTCCTCCGAAAGTTGAGGAGGTGCAGGTGCCAGCCACACTCAT
CTTGTCATTCACTGTGTCATATTATCATGACCACCCTTTCAACTCTTCAA
GGTGTATTTCCACTTGCTCGGTCATCCCAACCAAACCACCTCAGAGTCCC
CTCCCCTTTGCCTGCTGTAAGAAGGGCTCACCTGCCCCCTGTAAACGCAT
CAGGTACAGTAGCTCCCAATCAGGTGCCCCCAACCTCCTCTCCACCCCCT
CCCTGCCTGCCCTGCCCCTGTCACTAACCCTGAAATTTCCGCAGGAGCTA
GGGCCATCAGGAAACCCTGTTCAAGGCTTTGGTCTGTCAGCACCAGGGCC
AGCGACACCCATAGAGGGTGGGACTCCCCGTCAGACAGCCTACTCGGACA
AGGCTAAAGGTTACCGGGTCAAGGGCCCCTTCTCCCGCCTCCGGGACTGG
GTCAAGAGGGACTTCTCAAATTCACCCCCAAGAGCAAAGAGGTCTCCTGG
GGACAGGGATGGGGGTGGGGGGGGTGGAGTGGATGTGTTGCCCCCCCGGG
GGAGGAGGGGGCTCAGGTTCGGCGGGCAGAAGAAAGGCCGGAAGGGGAAA
TGAATAGCCCGGACTGTGCACTATTCATATGGCAGGCAGGTCATGCCAAG
TACTCTACTGTAGTACAAATATTACAGCGGGTCTGTTAATTTCTGG
back to top

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig986:284..1629+

>mRNA_D-mesarthrocarpus_Contig986.1.1 ID=mRNA_D-mesarthrocarpus_Contig986.1.1|Name=mRNA_D-mesarthrocarpus_Contig986.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=489bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig986:284..1629+ (Discosporangium mesarthrocarpum MT17_79)
ATGGGCCAAGGGGTACCTTCCATGGAATGTGGGGAGAGGGTTGAGGACTC
AGTCCTGGAGGCGGGGGCAGAAGTTCTGATGGCCACTGCGCCTGCTGGGG
ACAGGGGTGGGGGCATGGAAGATGTGGTCAAATTCTTCGAGGGCATCGTC
ACCCCAGAGGACATGGTCCCCTCCATCAACGAGCTAGGGCCATCAGGAAA
CCCTGTTCAAGGCTTTGGTCTGTCAGCACCAGGGCCAGCGACACCCATAG
AGGGTGGGACTCCCCGTCAGACAGCCTACTCGGACAAGGCTAAAGGTTAC
CGGGTCAAGGGCCCCTTCTCCCGCCTCCGGGACTGGGTCAAGAGGGACTT
CTCAAATTCACCCCCAAGAGCAAAGAGGTCTCCTGGGGACAGGGATGGGG
GTGGGGGGGGTGGAGTGGATGTGTTGCCCCCCCGGGGGAGGAGGGGGCTC
AGGTTCGGCGGGCAGAAGAAAGGCCGGAAGGGGAAATGA
back to top