mRNA_D-mesarthrocarpus_Contig983.2.2 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig983.2.2
Unique NamemRNA_D-mesarthrocarpus_Contig983.2.2
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig983.2.2 vs. uniprot
Match: D7FS80_ECTSI (B1358B12.18 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS80_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 6.520e-32
Identity = 137/230 (59.57%), Postives = 166/230 (72.17%), Query Frame = 2 
Query:  566 KNSLMEQMLKTAGQRQHWQEAIDLFDKMKAEGMSLDKLAYVAALRACSKGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKVSLYTAVMNACYTVGDLDGILAVADRLRDQRLKPDHSTYHLMVTSHIGRLDWVSATKALVDMSKDGLVPSKRSARQWRLASAALEEVDLDVDE----RDGEKAGTREDEDRNV*IVGSEGEFGD 1243
            K  LM QM+K AGQRQHW+EAI LFD+M+ +G+   K AY AALR       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX               VGD+D ILA+ ++LR Q L PDH+ YHL+VTSHI +LDWVSAT+ALV+M + GL P+  SAR+WRLA+A +EE+D++V+E    R+GE+A  R        + G+   +GD
Sbjct:   89 KKRLMAQMVKAAGQRQHWKEAIVLFDQMQEKGVPTVKAAYGAALRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGDMDAILAIGEQLRAQSLTPDHAGYHLIVTSHISKLDWVSATEALVEMGEAGLAPTAGSARKWRLANAVIEEIDIEVNEDYMPREGEEADDR--------MQGAGSRWGD 310
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig983.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FS80_ECTSI6.520e-3259.57B1358B12.18 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig983contigD-mesarthrocarpus_Contig983:2255..6304 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FS80
PFAMsPPR,PPR_2
Model size1515
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorychloroplast
Exons8
Evalue7.76e-34
EggNOG OGsKOG4197@1|root,KOG4197@2759|Eukaryota
Ec32 ortholog descriptionB1358B12.18
Ec32 orthologEc-01_000870.1
Descriptionendonuclease activity
Cds size1071
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig983.2.2prot_D-mesarthrocarpus_Contig983.2.2Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig983 2557..6162 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791134.4841044-UTR-D-mesarthrocarpus_Contig983:2254..25561680791134.4841044-UTR-D-mesarthrocarpus_Contig983:2254..2556Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig983 2255..2556 -
1680791134.6015463-UTR-D-mesarthrocarpus_Contig983:6162..63041680791134.6015463-UTR-D-mesarthrocarpus_Contig983:6162..6304Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig983 6163..6304 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791134.497299-CDS-D-mesarthrocarpus_Contig983:2556..27361680791134.497299-CDS-D-mesarthrocarpus_Contig983:2556..2736Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig983 2557..2736 -
1680791134.5111048-CDS-D-mesarthrocarpus_Contig983:3018..31681680791134.5111048-CDS-D-mesarthrocarpus_Contig983:3018..3168Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig983 3019..3168 -
1680791134.5239878-CDS-D-mesarthrocarpus_Contig983:3570..36931680791134.5239878-CDS-D-mesarthrocarpus_Contig983:3570..3693Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig983 3571..3693 -
1680791134.5354166-CDS-D-mesarthrocarpus_Contig983:4368..44701680791134.5354166-CDS-D-mesarthrocarpus_Contig983:4368..4470Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig983 4369..4470 -
1680791134.5497966-CDS-D-mesarthrocarpus_Contig983:4875..49971680791134.5497966-CDS-D-mesarthrocarpus_Contig983:4875..4997Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig983 4876..4997 -
1680791134.5617752-CDS-D-mesarthrocarpus_Contig983:5250..55021680791134.5617752-CDS-D-mesarthrocarpus_Contig983:5250..5502Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig983 5251..5502 -
1680791134.5723515-CDS-D-mesarthrocarpus_Contig983:5737..57761680791134.5723515-CDS-D-mesarthrocarpus_Contig983:5737..5776Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig983 5738..5776 -
1680791134.583557-CDS-D-mesarthrocarpus_Contig983:6059..61621680791134.583557-CDS-D-mesarthrocarpus_Contig983:6059..6162Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig983 6060..6162 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig983.2.2

>prot_D-mesarthrocarpus_Contig983.2.2 ID=prot_D-mesarthrocarpus_Contig983.2.2|Name=mRNA_D-mesarthrocarpus_Contig983.2.2|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=357bp
MASNVISTWVVGFVALSTTCSAFAPVAPYSTCPPGERWWSTDGTLYKESS
VPRPRPSSESRRVRPDRRMAGCRAAATALMTVTGHGCLGVDHYRARIWRR
CRRPRSGQGWGQAPVQATKGGAGGGSASGREVEVSFLKGVGKNSLMEQML
KTAGQRQHWQEAIDLFDKMKAEGMSLDKLAYVAALRACSKGAAWERAIQL
FDNCIEEGYDLDEVMVTSAVKACCQAGRPVEAEALLAKGVARGVQPKVSL
YTAVMNACYTVGDLDGILAVADRLRDQRLKPDHSTYHLMVTSHIGRLDWV
SATKALVDMSKDGLVPSKRSARQWRLASAALEEVDLDVDERDGEKAGTRE
DEDRNV*
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mRNA from alignment at D-mesarthrocarpus_Contig983:2255..6304-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig983.2.2 ID=mRNA_D-mesarthrocarpus_Contig983.2.2|Name=mRNA_D-mesarthrocarpus_Contig983.2.2|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=4050bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig983:2255..6304- (Discosporangium mesarthrocarpum MT17_79)
GCAAGTATGGCTTCGTTAAGAACACCGAGCCTTAAGAGCGACGTTATATA
CCTAACATGACTCCACGCGCGGACACTTTCAGCGCGCAGACGACCGTGAA
TGAGGCATCCTTCGATCAGCCTCATCAACCCCCTCTCTCAAAATGGCTTC
AAACGTGATATCAACATGGGTTGTTGGTTTCGTTGCTTTGAGCACGACTT
GCTCAGCATTTGCTCCTGTTGCTCCCTATTCTACGTGCCCTCCAGGTGGG
TCTCGATTAACCCCGTGGAACAGCAAATACTCCAAGTCTCTTTCCTCTTG
ACAGGTTTCCAGCTGCCATGGCTTTTGCACCGTAAGAGAAATTACAAGGA
CGGGGCACGGGTTCAATGAATAACATCAGGTAGTGAAGAGTTTCTGCGTT
GGGCTCCGAATCGTGGAGGCTGATGTGGCAAAACGGTTGGGGGCATCGTC
CATCGCAAAAGTGTAAGGTAAACCATGCACCCATTTCGCTCCGCTTCCTT
TCCCACCCCCACTGCATCGGGTGAGCAGGCGAACGATGGTGGAGCACCGA
TGGAACATTGTATAAAGGTAAGTTAAATGAACCCGACGCATGTTTTGGAC
ACATTTTCTGGTGACTCTCCCATATGGGAAATAAGGGATGTCATGTTTGT
CATCGAAACACCTCACGCGAACGTTTTGTAGACATTGTCCAAACCCTTGG
GAGTATGCGGGATCTCACTTATTCATGTAGTTCAGACCCTGCAATACCCC
GATGCCCTCAGTGACCACCTCACAATACCTGTTGTATTCCCTTGATCCTC
AGAAAGCTCGGTTCCACGGCCACGGCCCTCGTCTGAGTCTAGACGAGTGC
GGCCAGATCGTAGAATGGCTGGTTGCCGAGCCGCAGCCACAGCGCTCATG
ACGGTAACTGGGCATGGGTGTTTGGGGGTTGATCATTATCGGGCTAGAAT
CTGGCGCCGATGCCGCCGACCACGGTCAGGGCAGGGTTGGGGGCAAGCAC
CGGTTCAAGCCACGAAGGGCGGAGCAGGTGGTGGCAGCGCCTCCGGACGG
GAAGGTGCGCCCTAACCCTAATGTTATGGTAGTGCTCCACCTCGTGCGGG
GCTTGTGCAAACCCATTTCTTGTTACTCTTGGCAGCAGGGTTGATAGACT
ATTTCCGAAGGAATTGGCTGTGCATGAAGACCAGGCGAGAAGTGTTGCAA
CGAGGGCTTTTTAAGGGTTGTTGAAGTATGTCCGTTTTGACACCCCCTTG
ATTTTCCCAGTTTCCGTGCGTTCCTCAACTCCTGCTGCTTCGTGCTGGAA
CTGGCAGTGGAGGTAAGCTTTTTGAAGGGGGTTGGCAAGAACAGCCTTAT
GGAGCAAATGCTGAAGACAGCTGGACAGCGCCAACATTGGCAGGAAGCGA
TAGACCTGTTCGACAAGATGAAGGCCGAGGTGTGACTTGAGAGGGTACAG
TGGAACTCGGAGGGAGATAGAGCAGGCAGACTTTGTGTACAGTTGAAGGG
TTGGGGTTGCAGTTGGGTGGGGGAGTACAGCAGGGGCACTTCCCATGTGC
TGGCTGCCTAAGCTGAACTTACCAATAATCAGTCATACTTTTCTCTTCAG
AGAAGAGGTGCCTACCCCAATCAGGTCCCACTGTGCGCATAGATTGAATG
ACCATGGACAGGAAATGCCTGGCGTCCATAGGAACATAACAGGTTCACGC
ATACATGGGGGTCAGCCATCCACAACCTTCCCAGCAACATCACCAACATG
ACCAAATGTCTCTCCACCAAAACTGGATTGTCCCTCCCTACATTCCTCTG
GCACATATGGGGACTACATTATAACTCTGCAAAGGGAATGAGTCTGGATA
AGCTAGCGTATGTAGCTGCTCTGCGGGCCTGTTCCAAGGGGGCAGCATGG
GAGAGGGCAATCCAACTCTTTGACAATTGCATAGAAGTGAGTGATGGGTC
ATAGGCATTACTTTTGATTAGAGGGGAACTTTGGTCCCCTTCCAGTTGCC
CTTTTTGGTGTCACACCTTTGACATCTGTCATGTTAAGCCACCCAGCTGC
CTGTGAAGGCAGGTCACTGCACAGCCCACTCACAACACTGTTTCAGCCGC
CGGCTCTGCCTCTGGGGTGTCATTTTCTTTTGCCTCCCCTAGTACTTTGT
ACTAATGAAGCCTTGAACTCACCCATTATGGTATGGGGGATCCATGAAAT
GGACAAACTTGAGTCTGTGTGGCCTGAGGAGGGCAAAGTGGAAGTGTGGG
AGGATGATATATGTGGATGGGGTGATTTTGGAGGTAATTTTTGTGACAAC
AAGAGTGTTTTTTTTTCTTCTTTGAGGAATGCGTTGGGCATACAGGACTG
TAGTGCACTGGAGGAAGCAACCCTCCATACTCCGGGTCAGGCCTGTGGTT
TGTTTCTCCCCTGCCTCATTGTGCCCAACATCTTGTTTGTTTTTTTTTGG
TTTCTGTGGCTTGCTGTCCCTTTTCCCATCAAAGACTGATCGTGACCTTG
TTGAGCATGTCCGGTGCGGGGGAATCCATGGTCACCTTCCACCACTTCCC
CCAAACTGAATAGCCGTCGCCTTGTTCCACACTTTTCACTGCTTTTCCAT
GGCATGGGCAGGAAGGGTATGATCTGGACGAGGTGATGGTAACATCCGCG
GTAAAGGCATGTTGTCAAGCAGGCAGGCCAGTAGAGGCTGAGGCCCTCTT
GGCCAAAGGGGTGGCACGTGGGGTTCAGCCCAAGGTGAGGAAGAGAACTG
CCAAGGGCATCAGCTATTTACCACCCAGCTGAGGGCATGCTTGAGGTGCC
CATTTAGCTCCATCAGGTCAAGGCTATCATCTGTTGGCGTGAGACAGAGC
TCTGGAGCCATAGGCAACTGCTGCAGACAAATTTTAAGCTCTGGAGCCAT
TCTATGTAATTGCAGGTACTGCCACAATGTTCTCATTCTGTTGCCCACTC
TAACCCCCGTGGTTGATACTTGAAATCCTCGGTACAGTATTGGCTGTACA
GCCACCACAAAGACCGCTAAGGATCTCCCCAGCACACAGGAGACAGGGGC
TTCAACTTTGCTCCCTCGCCTCCCTCCCTCCCTCCCTCCCTCCTTGTCCC
TCCTCTCCCTCCCTGTGCACTATGGGCACTGTTTAGGTGTCACTGTACAC
AGCTGTCATGAATGCCTGCTACACAGTGGGGGATTTGGATGGAATCCTTG
CTGTGGCAGACAGGCTGAGGGACCAGCGTCTTAAGCCAGACCACAGCACA
TATCATCTCATGGTCACTTCCCACATTGGCAGGCTGGTGAGTTTCAGGGC
TAATGTACTGAACAGCGGGCAGGGTGCTTTGAAACATAGGGTGTATGTGG
AATTGGGGCTGTGAAGTTGGATTCAGACCACAAGGATGATGGAGGGGAGG
TGCCTGTGGAGTAGTGGAACCCAGAAGCAGCCTTGTGAGTTGTGACTTTG
GTAAGAGATCTCTGGTTCTGAAGGTGACTTCATGATAACGTTGCCATGCC
TGGCATGAAAAAGTCACTCCATGTCACAATGCCGCAGGCTTTTTGATTTC
ACCTCTCACCCTCTGCAGGATTGGGTCAGTGCCACGAAGGCCTTGGTGGA
CATGAGCAAGGATGGCCTGGTTCCCAGCAAGAGGTCAGCAAGGCAGTGGC
GTCTTGCCTCGGCTGCCTTGGAGGAGGTTGACCTCGATGTAGATGAACGT
GACGGGGAAAAGGCTGGGACGAGAGAGGATGAAGATAGGAATGTTTGAAT
CGTCGGGAGTGAGGGAGAATTTGGGGATGAAAGGGTCAATTGACTCTGCT
TACTCTGTGCGTGTAGACAGCTTAGGTTTGTGTTTTTAAGAATTAGTGAG
ATTGAATTGAGTGTCATGTTGTGTCTGTTCTTTGGAGATGAGAGCCCCCT
TGCTTCTTAATTTTAAGCCTGTGAACAGTTGGTTGCAACCAGTAGACGAG
CTCTAATATAATGCTTCCAACTCTTTACCGGTCCATCCGTTCGATCTTTT
GAATGAGATCACGAACACAACATGTATACATTCATAAATGATGATTGACC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig983:2255..6304-

>mRNA_D-mesarthrocarpus_Contig983.2.2 ID=mRNA_D-mesarthrocarpus_Contig983.2.2|Name=mRNA_D-mesarthrocarpus_Contig983.2.2|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=1071bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig983:2255..6304- (Discosporangium mesarthrocarpum MT17_79)
ATGGCTTCAAACGTGATATCAACATGGGTTGTTGGTTTCGTTGCTTTGAG
CACGACTTGCTCAGCATTTGCTCCTGTTGCTCCCTATTCTACGTGCCCTC
CAGGCGAACGATGGTGGAGCACCGATGGAACATTGTATAAAGAAAGCTCG
GTTCCACGGCCACGGCCCTCGTCTGAGTCTAGACGAGTGCGGCCAGATCG
TAGAATGGCTGGTTGCCGAGCCGCAGCCACAGCGCTCATGACGGTAACTG
GGCATGGGTGTTTGGGGGTTGATCATTATCGGGCTAGAATCTGGCGCCGA
TGCCGCCGACCACGGTCAGGGCAGGGTTGGGGGCAAGCACCGGTTCAAGC
CACGAAGGGCGGAGCAGGTGGTGGCAGCGCCTCCGGACGGGAAGTGGAGG
TAAGCTTTTTGAAGGGGGTTGGCAAGAACAGCCTTATGGAGCAAATGCTG
AAGACAGCTGGACAGCGCCAACATTGGCAGGAAGCGATAGACCTGTTCGA
CAAGATGAAGGCCGAGGGAATGAGTCTGGATAAGCTAGCGTATGTAGCTG
CTCTGCGGGCCTGTTCCAAGGGGGCAGCATGGGAGAGGGCAATCCAACTC
TTTGACAATTGCATAGAAGAAGGGTATGATCTGGACGAGGTGATGGTAAC
ATCCGCGGTAAAGGCATGTTGTCAAGCAGGCAGGCCAGTAGAGGCTGAGG
CCCTCTTGGCCAAAGGGGTGGCACGTGGGGTTCAGCCCAAGGTGTCACTG
TACACAGCTGTCATGAATGCCTGCTACACAGTGGGGGATTTGGATGGAAT
CCTTGCTGTGGCAGACAGGCTGAGGGACCAGCGTCTTAAGCCAGACCACA
GCACATATCATCTCATGGTCACTTCCCACATTGGCAGGCTGGATTGGGTC
AGTGCCACGAAGGCCTTGGTGGACATGAGCAAGGATGGCCTGGTTCCCAG
CAAGAGGTCAGCAAGGCAGTGGCGTCTTGCCTCGGCTGCCTTGGAGGAGG
TTGACCTCGATGTAGATGAACGTGACGGGGAAAAGGCTGGGACGAGAGAG
GATGAAGATAGGAATGTTTGA
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