mRNA_D-mesarthrocarpus_Contig9807.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig9807.1.1 vs. uniprot
Match: D7FME4_ECTSI (5\'-3\' exoribonuclease 1 (Exonuclease 2) (Exonuclease II) (Exo II) (P140) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME4_ECTSI) HSP 1 Score: 343 bits (879), Expect = 4.690e-111 Identity = 161/259 (62.16%), Postives = 197/259 (76.06%), Query Frame = 1 Query: 4 KQASYLTGRGVPGSAGVDIGKIQLMLRVTPLQGMRIDTKTGARRKVFGIEEADVPVHMALWSCPAPDPRFEERDKLTLGTRFPIGCRVICLHGGQGHGCLGDVVGHNRQNTKARSMLYRPPEPPFGQAIVQTVKAVYYPSVHICTKLGIPSHVFGKVVGSISVDPGRYDLGLNFKQNGKYQLLGYSKCVLKKERVWSYADTVKIAGSSQEDEEPEVAEWQYSEEAVKLVVQYRHKFPQLFHSLARRSGERFYEAQVHLG 780 +Q +Y+TGRGVPGS GVDIGK+QLML+ PLQGMR+D TGARRKVFG EEA+VPVHM LWSCP+ DPRF ER+ +TL RFP+G RV CLHGG GHGC G+VV H++ + L RPPEPPFG AIVQ+VK Y+P C LGI VFG++VGS+SVDPGR DL LN KQNG+YQLLGYS+CVL+ E WS +DTV++ GS+ E+ E W++S EA+KL+ +Y FPQLFH LAR GERF+EA++ LG Sbjct: 222 EQGAYITGRGVPGSGGVDIGKVQLMLKARPLQGMRVDPATGARRKVFGKEEAEVPVHMVLWSCPSEDPRFVERENVTLEERFPLGSRVTCLHGGNGHGCGGEVVAHSKGKVDVLADL-RPPEPPFGLAIVQSVKTAYFPQHKACQTLGISPQVFGRIVGSVSVDPGRVDLALNLKQNGRYQLLGYSRCVLRNEPAWSTSDTVRVVGSAPVTEDMEARSWEFSLEAIKLITRYARAFPQLFHGLARHGGERFFEAEMLLG 479
BLAST of mRNA_D-mesarthrocarpus_Contig9807.1.1 vs. uniprot
Match: A0A6H5KVU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU6_9PHAE) HSP 1 Score: 347 bits (891), Expect = 9.610e-110 Identity = 163/259 (62.93%), Postives = 199/259 (76.83%), Query Frame = 1 Query: 4 KQASYLTGRGVPGSAGVDIGKIQLMLRVTPLQGMRIDTKTGARRKVFGIEEADVPVHMALWSCPAPDPRFEERDKLTLGTRFPIGCRVICLHGGQGHGCLGDVVGHNRQNTKARSMLYRPPEPPFGQAIVQTVKAVYYPSVHICTKLGIPSHVFGKVVGSISVDPGRYDLGLNFKQNGKYQLLGYSKCVLKKERVWSYADTVKIAGSSQEDEEPEVAEWQYSEEAVKLVVQYRHKFPQLFHSLARRSGERFYEAQVHLG 780 +Q +Y+TGRGVPGS GVDIGK+QLML+ PLQGMR+D TGARRKVFG EEA+VPVHM LWSCP+ DPRF ER+K+TL RFP+G RV CLHGG GHGC+G+VV HN + + RPPEPPFG AIVQ+VK Y+P C LGI VFG++VGS+SVDPGR DLGLN KQNG+YQLLGYS+CVL+ E WS +DTV++ GS+ E+ E W++S EA+KL+ +Y FPQLFH LAR GERF+EA++ LG Sbjct: 90 EQGAYITGRGVPGSGGVDIGKVQLMLKARPLQGMRVDPATGARRKVFGKEEAEVPVHMVLWSCPSEDPRFVEREKVTLEERFPLGSRVTCLHGGNGHGCVGEVVAHNGKVDVLADL--RPPEPPFGLAIVQSVKTAYFPQHKACQTLGISPQVFGRIVGSVSVDPGRVDLGLNLKQNGRYQLLGYSRCVLRNEPAWSTSDTVRVVGSAPVTEDMEARSWEFSLEAIKLITRYARAFPQLFHGLARHRGERFFEAEMLLG 346
BLAST of mRNA_D-mesarthrocarpus_Contig9807.1.1 vs. uniprot
Match: A0A835Z4G8_9STRA (XRN 5'-3' exonuclease N-terminus-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4G8_9STRA) HSP 1 Score: 244 bits (624), Expect = 7.390e-71 Identity = 129/260 (49.62%), Postives = 161/260 (61.92%), Query Frame = 1 Query: 13 SYLTGRGVPGSAGVDIGKIQLMLRVTPLQGMRIDTKTGARRKVFGIEEADVPVHMALWSCPAPDPRFEERDKLTLGTRFPIGCRVICLHGG----QGHGCLGDVVGHNRQNTKARSMLYRPPEPPFGQAIVQTVKAVYYPSVHICTKLGIPSHVFGKVVGSISVDPGRYDLGLNFKQNGKYQLLGYSKCVLKKERVWSYADTVKIAGSSQEDEEPEVAEWQYSEEAVKLVVQYRHKFPQLFHSLARRSGERFYEAQVHLG 780 +YL GR PGS GVD+G I L V PLQG T +FG EEADVP+HMALW PAPDPRFEER +L R P+G RV+CL Q GC+G V L RPPEPPFG A+ V+ YYP+ +C +L I VFGKVVG+++ DPGRYD+GLN K NG+YQLLGYS+CVL+++ WS ADTV+I GS+ ED EV W+++E A +LV Y ++PQ+F +L R YEA G Sbjct: 722 AYLKGRATPGSGGVDVGPIGSRLTVRPLQGTSCRDVTAY---MFGSEEADVPLHMALWQSPAPDPRFEERGAPSLDVRLPVGSRVLCLTAAGAERQARGCVGRVKALTNGKVDVVVDL-RPPEPPFGAAVAAAVQDRYYPAHAVCQRLRIRPDVFGKVVGTVNADPGRYDIGLNLKANGRYQLLGYSRCVLREQAAWSTADTVRIVGSAGEDAAEEVGAWEFTEAAARLVALYMTRYPQMFAALHTLEHGRSYEAGALFG 977
BLAST of mRNA_D-mesarthrocarpus_Contig9807.1.1 vs. uniprot
Match: A0A6V1PVC7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PVC7_HETAK) HSP 1 Score: 237 bits (604), Expect = 1.040e-67 Identity = 123/258 (47.67%), Postives = 166/258 (64.34%), Query Frame = 1 Query: 16 YLTGRGVPGSAGVDIGKIQLMLRVTPLQGMRIDTKTGARRKVFGIEEADVPVHMALWSCPAPDPRFEERDKLTLGTRFPIGCRVICLHGGQGHGCLGDVVGHN-RQNTKARSMLYRPPEPPFGQAIVQTVKAVYYPSVHICTKLGIPSHVFGKVVGSISVDPGRYDLGLNFKQNGKYQLLGYSKCVLKKERVWSYADTVKIAGSSQED--EEPEVAEWQYSEEAVKLVVQYRHKFPQLFHSLARRSGERFYEAQVHLG 780 YL GRGVPG+ G D+G + L L V PLQGMR D TG KV+G +EA VP +AL + PAPDPRF E++ L R P+G RV+ + G G G V GH+ QNT + R PEPPFG I ++++ Y P+ + LG+ VFGKVVGS+ ++PGR ++GLN K NG++QLLGYS+C+LK+ W D VKI G+++ED EE +WQ+S +A +L+V Y+ FPQ+FH+LAR R Y A+ LG Sbjct: 647 YLGGRGVPGTGGADVGPVALQLAVRPLQGMRQDPLTGRTHKVWGTQEAQVPYQLALRAHPAPDPRFREKEGPPLPERVPVGARVVFVRGAF-RGLSGQVEGHDVEQNTCRVVVEERDPEPPFGLNIARSIQEQYVPAPQLARALGLRGDVFGKVVGSVRIEPGRIEVGLNLKWNGQFQLLGYSRCLLKRRAAWKEGDAVKIVGTAEEDGGEEDLRGDWQFSRKAGELLVDYQRNFPQVFHALARAGHARHYSAEQLLG 903
BLAST of mRNA_D-mesarthrocarpus_Contig9807.1.1 vs. uniprot
Match: A0A7S2UEG0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UEG0_9STRA) HSP 1 Score: 205 bits (522), Expect = 6.970e-60 Identity = 115/272 (42.28%), Postives = 153/272 (56.25%), Query Frame = 1 Query: 1 MKQASYLTGRGVPGSAGVDIGKIQLMLRVTPLQGMRIDTKTGARRKVFGIEEADVPVHMALWSCPAPDPRFEERDKLTLGTRFPIGCRVICLHGGQGHGCLGDVVGHNRQNTKARSMLYRPPEPPFGQAIVQTVKAVYYPSVHICTKLGIPSHVFGKVVGSISVDPGRYDLGLNFKQNGKYQLLGYSKCVLKKER--------VWSYADTVKIAGS--------SQEDEEPEVAEWQYSEEAVKLVVQYRHKFPQLFHSLARRSGERFYEAQ 768 M + YL G G+PGS GV+IG IQ+ + PLQGM+ G+ +KVFG EEADVP+ M L + PAPDPRF E+ T RFP VI L G+ GC+G VVG + + ++ PPEPPFG AI ++V+ Y S L I +FGK+ GS+ DPGRYDLGLN K +LGY++ K W D+V + GS S +D+ E W+Y+ +AV+LV YR FPQLF ++ + ERFYEA+ Sbjct: 25 MMKTQYLNGSGIPGSGGVNIGDIQIRFTLVPLQGMKTSPVDGSSKKVFGKEEADVPLQMVLMTAPAPDPRFYEKGAQTTAERFPPTTNVI-LTKGKHRGCVGTVVGAADSDKVSVTVAVVPPEPPFGLAIARSVQESYISSSDAAKVLNIHPGIFGKITGSLHFDPGRYDLGLNLKYKHDLSVLGYTRRRNKPASGNNSNVAGAWVMGDSVLVVGSKRSTHGNSSSDDDNKEKIYWEYTPKAVRLVAAYRQTFPQLFSAITKYPNERFYEAK 295
BLAST of mRNA_D-mesarthrocarpus_Contig9807.1.1 vs. uniprot
Match: A0A7S0BVY8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BVY8_9STRA) HSP 1 Score: 207 bits (527), Expect = 2.370e-59 Identity = 116/271 (42.80%), Postives = 163/271 (60.15%), Query Frame = 1 Query: 7 QASYLTGRGVPGSAGVDIGKIQLMLRVTPLQGMRIDTKTGARRKVFGIEEADVPVHMALWSCPAPDPRFEERDKLTLGTRFPIGCRVICLHGGQGHGCLGDVVGHNRQNTKAR---SMLYRPPEPPFGQAIVQTVKAVYYPSVHICTKLGIPSHVFGKVVGSISVDPGRYDLGLNFKQNGKYQLLGYSK---------CVLKKERVWSYADTVKIAGSS----QEDEEPEVAEWQYSEEAVKLVVQYRHKFPQLFHSLARRSGER-FYEAQ 768 + Y G G+PGS GV IG+ Q+ LRV PLQGM+ G+ +K+FG EEADVP+ MALWS PAPDPRF ER +TL +P+GC VI L G+ GC+G VVG + + + + ++ PPEPPFG AI ++VK Y S L + VFGK+ GS+SVDPGRYDLGLN K + GY++ KK W D++K+ GSS + ++ + W+Y+ +A++LV YR +FP LF +++R + + FY A+ Sbjct: 46 EQQYAMGNGIPGSGGVRIGEAQIRLRVVPLQGMKTFAD-GSTKKIFGKEEADVPLQMALWSAPAPDPRFVERGPMTLSDLYPVGCNVI-LTKGKHKGCIGTVVGVSGEKDEKKVVTNVRIIPPEPPFGLAIARSVKESYVSSHDAAKVLHLDPSVFGKITGSLSVDPGRYDLGLNLKYKEGLCVSGYTRKKNFVEKNVADSKKVNPWLVGDSLKVVGSSVSKGDDTKKKDRTIWEYTPQAIRLVAAYRQQFPSLFSAISRDTTNKGFYNAK 314
BLAST of mRNA_D-mesarthrocarpus_Contig9807.1.1 vs. uniprot
Match: A0A7S4RC29_9STRA (5'-3' exoribonuclease 1 n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RC29_9STRA) HSP 1 Score: 201 bits (510), Expect = 4.310e-55 Identity = 114/271 (42.07%), Postives = 156/271 (57.56%), Query Frame = 1 Query: 16 YLTGRGVPGSAGVDIGKIQLMLRVTPLQGMRIDTKTGARRKVFGIEEADVPVHMALWSCPAPDPRFEERDKLTLGTRFPIGCRVICLHGGQGHGCLGDVVGHNRQNTKARSMLYRPPEPPFGQAIVQTVKAVYYPSVHICTKLGIPSHVFGKVVGSISVDPGRYDLGLNFKQNGKYQLLGYSKCVL-----KKER-----VWSYADTVKIAGS---SQEDEEP---EVAEWQYSEEAVKLVVQYRHKFPQLFHSLARRSGERFYEAQVHLG 780 Y G +PGS GV+IG IQ+ +V PLQGM+ + + G+ +K+FG EEAD+P+ MALW PAPDPRF ER +T+ RFP C +I L G+ GC+G V+G + PPEPPFG AI ++V+ Y + L +P +F ++ GS+ DPGRYDLGLN +LGY++ K E+ VW D+V + GS S D E E ++Y+ +AV+LV YR KFPQLF +L + ERFYEA+ G Sbjct: 786 YANGARIPGSGGVNIGDIQIRFKVVPLQGMKTNPQDGSSKKLFGKEEADIPLQMALWEAPAPDPRFIERGPMTIKDRFPPKCNII-LTKGKYRGCMGSVIGVVDGEKLGVKVKVVPPEPPFGLAIARSVQESYISTADAANVLKMPPGIFSRITGSVFFDPGRYDLGLNLTYKTDLCVLGYTRRKKGNRYGKNEKKQANNVWKTGDSVLVVGSRANSSSDGEKGGREKIVFEYTPKAVRLVAAYRQKFPQLFAALCKNPRERFYEAKQVFG 1055
BLAST of mRNA_D-mesarthrocarpus_Contig9807.1.1 vs. uniprot
Match: K0STL9_THAOC (5'-3' exoribonuclease 1 n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0STL9_THAOC) HSP 1 Score: 196 bits (499), Expect = 1.280e-53 Identity = 114/273 (41.76%), Postives = 156/273 (57.14%), Query Frame = 1 Query: 16 YLTGRGVPGSAGVDIGKIQLMLRVTPLQGMRIDTKTGARRKVFGIEEADVPVHMALWSCPAPDPRFEERDKLTLGTRFPIGCRVICLHGGQGHGCLGDVVGHNRQNTKARSMLYRPPEPPFGQAIVQTVKAVYYPSVHICTKLGIPSHVFGKVVGSISVDPGRYDLGLNFKQNGKYQLLGYSKCVL--------KKERVWSYADTVKIAGS-----SQED-----EEPEVAEWQYSEEAVKLVVQYRHKFPQLFHSLARRSGERFYEAQVHLG 780 YL G G PGS GV IG +Q+ L++ PLQGM+ G+ +K+FG EEAD+P+ MAL S PAPDPRF ER +L RFP C+V+ L G+ GC+G V+ ++ + PPEPPFG AI ++V Y S L + VFG+V G++ PG+YDLGLN K + +LGY++ K WS DTV + GS S ED EE + W+++ +AV+LV Y++ FP LF +LAR ERFY+A+ G Sbjct: 834 YLAGAGYPGSGGVQIGDVQIRLKILPLQGMKASPLDGSSKKLFGKEEADLPLQMALASSPAPDPRFIERGPKSLKDRFPSKCKVV-LTKGKYRGCIGTVLSTLDKDKVGVKVSVIPPEPPFGLAIARSVGESYISSGDAARVLKMNPKVFGRVTGNLFFSPGKYDLGLNLKYRDRRYVLGYTRIKQDPNEAKKKKTSNAWSAGDTVLVVGSKRMSASDEDFDSAGEEKKRTIWEFTPKAVRLVAAYKNAFPHLFAALARDPDERFYDAKKVFG 1105
BLAST of mRNA_D-mesarthrocarpus_Contig9807.1.1 vs. uniprot
Match: A0A7S2PS12_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PS12_9STRA) HSP 1 Score: 192 bits (489), Expect = 2.700e-52 Identity = 109/270 (40.37%), Postives = 158/270 (58.52%), Query Frame = 1 Query: 1 MKQASYLTGRGVPGSAGVDIGKIQLMLRVTPLQGMRIDTKTGARRKVFGIEEADVPVHMALWSCPAPDPRFEERDKLTLGTRFPIGCRVICLHGGQGHGCLGDVVG---HNRQNTKARSMLYRPPEPPFGQAIVQTVKAVYYPSVHICTKLGIPSHVFGKVVGSISVDPGRYDLGLNFKQNGKYQLLGYS-------KCVLKKERVWSYADTVKIAGSSQ----EDEEPEVAEWQYSEEAVKLVVQYRHKFPQLFHSLARRSGERFYEAQ 768 + Q YL G GVPGS GVDI ++Q+ L+V LQGM+ G+ +KVFG EAD+P+HMALW+ PAPD RF E +L FP G ++ L G+ GC G V+ + + + PPEPPFG AI ++V+ Y S+ L + V GK+ GS+ V+PGRYDLGLN K + +LGY+ KC K ++ WS D++ + GS Q +DE+ W+Y+ +A++L+ YR FPQ+F +L++ ER Y+A+ Sbjct: 514 IMQQQYLVGSGVPGSGGVDINEVQIRLKVVVLQGMKTYAD-GSSKKVFGKVEADLPLHMALWASPAPDERFVESGPKSLNELFPKGSNIL-LTKGKHKGCRGSVLSVTEGGKDSCVVAKVHVLPPEPPFGLAIAKSVQDTYVSSIEAAKLLKLNPGVLGKLTGSLLVNPGRYDLGLNLKFKKEMYVLGYTRMKNVNVKCQ-KAKQAWSEGDSLLVVGSRQNMPDQDEQEGKVIWEYTPKAIRLIALYRQTFPQIFSALSKAPHERIYDAK 780
BLAST of mRNA_D-mesarthrocarpus_Contig9807.1.1 vs. uniprot
Match: B7FQA3_PHATC (Predicted protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FQA3_PHATC) HSP 1 Score: 189 bits (479), Expect = 3.410e-52 Identity = 106/270 (39.26%), Postives = 157/270 (58.15%), Query Frame = 1 Query: 16 YLTGRGVPGSAGVDIGKIQLMLRVTPLQGMRIDTKTGARRKVFGIEEADVPVHMALWSCPAPDPRFEERDKLTLGTRFPIGCRVICLHGGQGHGCLGDVVGHNRQNTKARSMLYRPPEPPFGQAIVQTVKAVYYPSVHICTKLGIPSHVFGKVVGSISVDPGRYDLGLNFKQNGKYQLLGYSKCVLKKE-----------RVWSYADTVKIAGSS----QEDEEPEVAEWQYSEEAVKLVVQYRHKFPQLFHSLARRSGERFYEAQVHLG 780 Y TG GVPGS GV I +I++ L++ PLQGM+ + G+ +K+FGIEEADVP+ +ALW PAPDPRF ER +TL RFP V+ L G+ GC G VVG + + + P E PFG AI ++V+ + S L + +FGKV G + + GRYDLGLN K + ++GY++ + + W D++ + GSS +ED E + +W+Y+ +A++LV YR +FPQLF ++A++ E+ Y+A G Sbjct: 123 YHTGNGVPGSGGVQIDEIKIRLKLLPLQGMKTNPANGSSKKLFGIEEADVPLQLALWQAPAPDPRFVERGPMTLSERFPESSSVV-LTKGKYRGCKGRVVGVADRKSVGVKVEVIPAELPFGLAIARSVRESHISSSDAAKILKMNPGLFGKVTGRLQFEQGRYDLGLNLKSSDGMCVVGYTRKKWEPQSDLGKKGASLNNAWMAGDSLLVVGSSRNQIEEDREDRI-QWEYTPKAIRLVEDYRREFPQLFANIAKKPNEKKYDANKIFG 390 The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9807.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig9807.1.1 >prot_D-mesarthrocarpus_Contig9807.1.1 ID=prot_D-mesarthrocarpus_Contig9807.1.1|Name=mRNA_D-mesarthrocarpus_Contig9807.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=260bp MKQASYLTGRGVPGSAGVDIGKIQLMLRVTPLQGMRIDTKTGARRKVFGIback to top mRNA from alignment at D-mesarthrocarpus_Contig9807:241..4441- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-mesarthrocarpus_Contig9807.1.1 ID=mRNA_D-mesarthrocarpus_Contig9807.1.1|Name=mRNA_D-mesarthrocarpus_Contig9807.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=4201bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9807:241..4441- (Discosporangium mesarthrocarpum MT17_79)back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9807:241..4441- >mRNA_D-mesarthrocarpus_Contig9807.1.1 ID=mRNA_D-mesarthrocarpus_Contig9807.1.1|Name=mRNA_D-mesarthrocarpus_Contig9807.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=780bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9807:241..4441- (Discosporangium mesarthrocarpum MT17_79)back to top |