mRNA_D-mesarthrocarpus_Contig9802.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9802.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig9802.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig9802.1.1 vs. uniprot
Match: A0A6H5L2U2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L2U2_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 6.550e-18
Identity = 41/59 (69.49%), Postives = 51/59 (86.44%), Query Frame = 1 
Query:    1 QVKRAREEAEEINAKRKAAQESAQRALWNLGRQRSEGADKNLHIQLACEGVKAEIKRLK 177
            Q KRAREEAE +N KRK +QE+A++ LWNL R+RSEG DKN+ IQLACEG++AE+KRLK
Sbjct:  157 QAKRAREEAERVNLKRKTSQEAAEKTLWNLARKRSEGFDKNVQIQLACEGLRAEVKRLK 215
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9802.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L2U2_9PHAE6.550e-1869.49Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9802contigD-mesarthrocarpus_Contig9802:98..292 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LQA4
Preferred nameBCAS2
PFAMsBCAS2
Model size195
Max annot lvl2759|Eukaryota
KEGG koko:K12861,ko:K13336,ko:K20161
KEGG TC3.A.20.1,9.A.17.1
KEGG Pathwayko03040,ko04146,map03040,map04146
KEGG ModuleM00353,M00355
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0000974,GO:0002218,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005730,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008380,GO:0009605,GO:0009607,GO:0009617,GO:0009620,GO:0009870,GO:0009987,GO:0010204,GO:0010467,GO:0015630,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0023052,GO:0031347,GO:0031349,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0042742,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0045088,GO:0045089,GO:0045292,GO:0046483,GO:0048518,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050832,GO:0050896,GO:0051704,GO:0051707,GO:0051716,GO:0065007,GO:0070013,GO:0071007,GO:0071011,GO:0071013,GO:0071014,GO:0071704,GO:0080134,GO:0090304,GO:0098542,GO:1901360,GO:1902494,GO:1990904
Exons1
Evalue2.19e-18
EggNOG OGsKOG3096@1|root,KOG3096@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-26_005540.1
DescriptionmRNA processing
Cds size195
COG categoryA
BRITEko00000,ko00001,ko00002,ko03041,ko03400,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791132.413792-CDS-D-mesarthrocarpus_Contig9802:97..2921680791132.413792-CDS-D-mesarthrocarpus_Contig9802:97..292Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9802 98..292 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9802.1.1prot_D-mesarthrocarpus_Contig9802.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9802 98..292 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9802.1.1

>prot_D-mesarthrocarpus_Contig9802.1.1 ID=prot_D-mesarthrocarpus_Contig9802.1.1|Name=mRNA_D-mesarthrocarpus_Contig9802.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=65bp
QVKRAREEAEEINAKRKAAQESAQRALWNLGRQRSEGADKNLHIQLACEG
VKAEIKRLKTEVEAR
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mRNA from alignment at D-mesarthrocarpus_Contig9802:98..292+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9802.1.1 ID=mRNA_D-mesarthrocarpus_Contig9802.1.1|Name=mRNA_D-mesarthrocarpus_Contig9802.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=195bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9802:98..292+ (Discosporangium mesarthrocarpum MT17_79)
CAGGTGAAGCGGGCAAGAGAAGAAGCGGAGGAGATCAACGCCAAGCGGAA
GGCGGCACAGGAATCAGCGCAAAGGGCTCTGTGGAACTTGGGCAGGCAAA
GGTCAGAGGGGGCGGACAAGAACCTGCACATCCAGCTTGCATGCGAAGGG
GTCAAGGCGGAGATCAAGCGACTCAAGACCGAGGTCGAGGCAAGG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9802:98..292+

>mRNA_D-mesarthrocarpus_Contig9802.1.1 ID=mRNA_D-mesarthrocarpus_Contig9802.1.1|Name=mRNA_D-mesarthrocarpus_Contig9802.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=195bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9802:98..292+ (Discosporangium mesarthrocarpum MT17_79)
CAGGTGAAGCGGGCAAGAGAAGAAGCGGAGGAGATCAACGCCAAGCGGAA
GGCGGCACAGGAATCAGCGCAAAGGGCTCTGTGGAACTTGGGCAGGCAAA
GGTCAGAGGGGGCGGACAAGAACCTGCACATCCAGCTTGCATGCGAAGGG
GTCAAGGCGGAGATCAAGCGACTCAAGACCGAGGTCGAGGCAAGG
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