mRNA_D-mesarthrocarpus_Contig9792.3.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9792.3.1
Unique NamemRNA_D-mesarthrocarpus_Contig9792.3.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig9792.3.1 vs. uniprot
Match: D7FHE5_ECTSI (Serine/threonine protein phosphatase 2A regulatory subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHE5_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 4.900e-27
Identity = 49/56 (87.50%), Postives = 52/56 (92.86%), Query Frame = 1 
Query:    1 LSHMQDKLFHLLAQCLASQHFQVAERTLFLWNNEHLVNKGCFSRQYTHAILPVIYG 168
            L  + DKLFHLLAQCLASQHFQVAERTLFLWNNEHLV+KGCFSR YTH+ILPVIYG
Sbjct:  310 LQQVHDKLFHLLAQCLASQHFQVAERTLFLWNNEHLVSKGCFSRGYTHSILPVIYG 365
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig9792.3.1 vs. uniprot
Match: A0A6H5L4B6_9PHAE (Serine/threonine protein phosphatase 2A regulatory subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4B6_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 5.160e-27
Identity = 49/56 (87.50%), Postives = 52/56 (92.86%), Query Frame = 1 
Query:    1 LSHMQDKLFHLLAQCLASQHFQVAERTLFLWNNEHLVNKGCFSRQYTHAILPVIYG 168
            L  + DKLFHLLAQCLASQHFQVAERTLFLWNNEHLV+KGCFSR YTH+ILPVIYG
Sbjct:  330 LQQVHDKLFHLLAQCLASQHFQVAERTLFLWNNEHLVSKGCFSRGYTHSILPVIYG 385
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig9792.3.1 vs. uniprot
Match: A0A835ZAF4_9STRA (Serine/threonine protein phosphatase 2A regulatory subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAF4_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.890e-21
Identity = 43/56 (76.79%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    1 LSHMQDKLFHLLAQCLASQHFQVAERTLFLWNNEHLVNKGCFSRQYTHAILPVIYG 168
            L  +Q  LF LLAQCL SQHFQVAERTLFLWNN+HLV+KGCFSR +T  ILPVIYG
Sbjct:  298 LQQVQGPLFALLAQCLGSQHFQVAERTLFLWNNDHLVSKGCFSRAHTTTILPVIYG 353
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig9792.3.1 vs. uniprot
Match: A0A7S4AV92_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AV92_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 7.600e-19
Identity = 36/56 (64.29%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:    1 LSHMQDKLFHLLAQCLASQHFQVAERTLFLWNNEHLVNKGCFSRQYTHAILPVIYG 168
            L+ + D LF  LA+CL S+HFQV ER LFLWNNEHLVN GC SR    A+LP+IYG
Sbjct:    6 LAQVSDMLFTNLARCLDSEHFQVVERALFLWNNEHLVNSGCLSRLNAQAVLPIIYG 61
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig9792.3.1 vs. uniprot
Match: A0A7S2V448_9STRA (Serine/threonine protein phosphatase 2A regulatory subunit n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V448_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.350e-18
Identity = 38/56 (67.86%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:    1 LSHMQDKLFHLLAQCLASQHFQVAERTLFLWNNEHLVNKGCFSRQYTHAILPVIYG 168
            L  ++  LF L+A+CL SQHFQVAER LFLWNNE LVN GC SRQY  +ILP+IYG
Sbjct:  338 LLQVEQPLFKLIAKCLGSQHFQVAERALFLWNNEQLVNSGCLSRQYASSILPLIYG 393
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig9792.3.1 vs. uniprot
Match: A0A1W0A9J9_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A9J9_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.570e-18
Identity = 38/56 (67.86%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:    1 LSHMQDKLFHLLAQCLASQHFQVAERTLFLWNNEHLVNKGCFSRQYTHAILPVIYG 168
            L  +   LF +LA+CL SQHFQV+ER LFLWNNEHLVN GC SRQ+   ILPVIYG
Sbjct:  365 LQQVHKDLFRVLAKCLGSQHFQVSERALFLWNNEHLVNNGCLSRQHASLILPVIYG 420
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig9792.3.1 vs. uniprot
Match: A0A397DPI7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DPI7_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 2.410e-18
Identity = 37/56 (66.07%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:    1 LSHMQDKLFHLLAQCLASQHFQVAERTLFLWNNEHLVNKGCFSRQYTHAILPVIYG 168
            L  +   LF +L++CL SQHFQV+ER LFLWNNEHLVN GC SRQ+   ILPVIYG
Sbjct:  168 LQQIHKDLFRVLSKCLGSQHFQVSERALFLWNNEHLVNNGCLSRQHAALILPVIYG 223
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig9792.3.1 vs. uniprot
Match: A0A485LJQ3_9STRA (Serine/threonine protein phosphatase 2A regulatory subunit n=17 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485LJQ3_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 2.730e-18
Identity = 37/56 (66.07%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:    1 LSHMQDKLFHLLAQCLASQHFQVAERTLFLWNNEHLVNKGCFSRQYTHAILPVIYG 168
            L+ +   LF +L++CL SQHFQV+ER LFLWNNEHLVN GC SRQ+   ILPVIYG
Sbjct:  372 LTQIHKDLFRVLSKCLGSQHFQVSERALFLWNNEHLVNNGCLSRQHASLILPVIYG 427
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig9792.3.1 vs. uniprot
Match: A0A6H5J7C6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7C6_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 7.550e-18
Identity = 35/56 (62.50%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:    1 LSHMQDKLFHLLAQCLASQHFQVAERTLFLWNNEHLVNKGCFSRQYTHAILPVIYG 168
            ++ ++D+LF+LLA+C++S+HFQVAER LFLWNNEHLV  G  S QY   +LPVIYG
Sbjct:  226 IAEVEDQLFNLLARCISSEHFQVAERALFLWNNEHLVTAGVLSMQYPSPLLPVIYG 281
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig9792.3.1 vs. uniprot
Match: K3XB75_GLOUD (Serine/threonine protein phosphatase 2A regulatory subunit n=2 Tax=Pythiaceae TaxID=4782 RepID=K3XB75_GLOUD)

HSP 1 Score: 84.7 bits (208), Expect = 9.250e-18
Identity = 37/56 (66.07%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:    1 LSHMQDKLFHLLAQCLASQHFQVAERTLFLWNNEHLVNKGCFSRQYTHAILPVIYG 168
            L  +   LF  LA+ L SQHFQV+ER+LFLWNNEHLVN GC S+Q+ H ILPVIYG
Sbjct:  346 LQQVHKPLFQALAKWLGSQHFQVSERSLFLWNNEHLVNNGCLSKQHAHLILPVIYG 401
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9792.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHE5_ECTSI4.900e-2787.50Serine/threonine protein phosphatase 2A regulatory... [more]
A0A6H5L4B6_9PHAE5.160e-2787.50Serine/threonine protein phosphatase 2A regulatory... [more]
A0A835ZAF4_9STRA1.890e-2176.79Serine/threonine protein phosphatase 2A regulatory... [more]
A0A7S4AV92_9STRA7.600e-1964.29Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S2V448_9STRA1.350e-1867.86Serine/threonine protein phosphatase 2A regulatory... [more]
A0A1W0A9J9_9STRA1.570e-1867.86Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A397DPI7_9STRA2.410e-1866.07Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A485LJQ3_9STRA2.730e-1866.07Serine/threonine protein phosphatase 2A regulatory... [more]
A0A6H5J7C6_9PHAE7.550e-1862.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
K3XB75_GLOUD9.250e-1866.07Serine/threonine protein phosphatase 2A regulatory... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9792contigD-mesarthrocarpus_Contig9792:2612..3546 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FHE5
PFAMsB56
Model size183
Max annot lvl2759|Eukaryota
KEGG koko:K11584
KEGG Pathwayko03015,ko04071,ko04113,ko04114,ko04151,ko04152,ko04261,ko04728,ko05165,map03015,map04071,map04113,map04114,map04151,map04152,map04261,map04728,map05165
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000096,GO:0000159,GO:0000902,GO:0000904,GO:0002682,GO:0002683,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005777,GO:0005829,GO:0006082,GO:0006139,GO:0006520,GO:0006534,GO:0006555,GO:0006575,GO:0006725,GO:0006732,GO:0006790,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0008287,GO:0009058,GO:0009066,GO:0009069,GO:0009116,GO:0009119,GO:0009653,GO:0009759,GO:0009888,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0010026,GO:0010090,GO:0010565,GO:0010646,GO:0010648,GO:0016043,GO:0016143,GO:0016144,GO:0017144,GO:0018130,GO:0019216,GO:0019217,GO:0019220,GO:0019222,GO:0019438,GO:0019748,GO:0019752,GO:0019757,GO:0019758,GO:0019760,GO:0019761,GO:0023051,GO:0023057,GO:0030154,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031347,GO:0031348,GO:0031974,GO:0031981,GO:0031998,GO:0032000,GO:0032502,GO:0032989,GO:0032991,GO:0033353,GO:0034641,GO:0042278,GO:0042325,GO:0042343,GO:0042430,GO:0042435,GO:0042579,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0045088,GO:0045824,GO:0045834,GO:0045923,GO:0046128,GO:0046320,GO:0046321,GO:0046439,GO:0046483,GO:0046498,GO:0046500,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048856,GO:0048869,GO:0050776,GO:0050777,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0050994,GO:0050996,GO:0051174,GO:0051186,GO:0055086,GO:0062012,GO:0062013,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0072521,GO:0080090,GO:0080134,GO:0080183,GO:0090342,GO:0090558,GO:0090626,GO:0097159,GO:1900457,GO:1900458,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901657,GO:1901659,GO:1902494,GO:1903293,GO:2000377
Exons2
Evalue2.62e-27
EggNOG OGsKOG2085@1|root,KOG2085@2759|Eukaryota
Descriptionprotein phosphatase regulator activity
Cds size174
COG categoryZ
BRITEko00000,ko00001,ko01009,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791130.4272912-CDS-D-mesarthrocarpus_Contig9792:2611..27281680791130.4272912-CDS-D-mesarthrocarpus_Contig9792:2611..2728Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9792 2612..2728 -
1680791130.4436212-CDS-D-mesarthrocarpus_Contig9792:3480..35371680791130.4436212-CDS-D-mesarthrocarpus_Contig9792:3480..3537Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9792 3481..3537 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791130.455919-UTR-D-mesarthrocarpus_Contig9792:3537..35461680791130.455919-UTR-D-mesarthrocarpus_Contig9792:3537..3546Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9792 3538..3546 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9792.3.1prot_D-mesarthrocarpus_Contig9792.3.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9792 2612..3537 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9792.3.1

>prot_D-mesarthrocarpus_Contig9792.3.1 ID=prot_D-mesarthrocarpus_Contig9792.3.1|Name=mRNA_D-mesarthrocarpus_Contig9792.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=58bp
MQDKLFHLLAQCLASQHFQVAERTLFLWNNEHLVNKGCFSRQYTHAILPV
IYGKWKP*
back to top

mRNA from alignment at D-mesarthrocarpus_Contig9792:2612..3546-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9792.3.1 ID=mRNA_D-mesarthrocarpus_Contig9792.3.1|Name=mRNA_D-mesarthrocarpus_Contig9792.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=935bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9792:2612..3546- (Discosporangium mesarthrocarpum MT17_79)
CTGTCGCACATGCAGGACAAGCTCTTCCACCTCCTGGCCCAGTGCCTCGC
CAGCCAGCACTTTCAGGTGAGGGGCTTCATCCCCATCCGTCCTTTGCCTT
GAGCCCTGAGTAACCCCATCGTCGTAAGCAGTAACACATAACCCTGAACC
CTTTTGTGCCACGTGAGAACCTTTGCCCCGTTGAACTTTGCCCTAACCCT
AACCCCAGCCCTGGCTGAGAGCAAACGCCCGCACTCTGTGGTAAGCAGAT
ACCCCTAACCCTAACCCTACACACCCTTGATCGGTTATCCCTAACCCCAA
AGAACCCTAGGATCCCTTCCCTGACCCCGGCTCCAACCCTAACCCTAGCC
AGTCCTTCGCTCTTTATCCAGGAAACCCCTCACCAACAAAAAAAATATAC
CCTGATATATCATCCTTAACACTACAATGGCTTGCTGTAAAAAGGCACAC
CGGTTGAGTTAGAGCGGGTACCTGGGAGGAACCTAACCCTGGCCACATAA
CTGATCAGTTATCCCCGACGTGATGGTGGGTTTCATGCAACTATAGAGTG
CACGGGGTGGATATCAGAGTACATACTTGGGGGAACCCTTAGTAACCCCA
ATGCCCGTAGCGCTAACCAAACCCTAACCCTAACCCCTTTATTTTTGTTT
GAGCTAAGCATGAGCAGGGGTGGGTGCTTCCGAGAACTCTACCCTTATTA
ACCCTAACCCTATGGCATAACCCACTGCCTATGCATAACCCTGTACATAT
CTCCCTACCCTTAATTCCATCTATAAACCTAACCCCCTCATGGTTGTAAC
CCTGTGCATGGCCGTCAGGTGGCGGAGCGCACCCTGTTCTTGTGGAACAA
CGAGCACCTGGTGAACAAGGGGTGCTTCAGCAGGCAGTACACCCACGCCA
TTCTGCCCGTGATATACGGCAAGTGGAAACCCTAA
back to top

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9792:2612..3546-

>mRNA_D-mesarthrocarpus_Contig9792.3.1 ID=mRNA_D-mesarthrocarpus_Contig9792.3.1|Name=mRNA_D-mesarthrocarpus_Contig9792.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=174bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9792:2612..3546- (Discosporangium mesarthrocarpum MT17_79)
ATGCAGGACAAGCTCTTCCACCTCCTGGCCCAGTGCCTCGCCAGCCAGCA
CTTTCAGGTGGCGGAGCGCACCCTGTTCTTGTGGAACAACGAGCACCTGG
TGAACAAGGGGTGCTTCAGCAGGCAGTACACCCACGCCATTCTGCCCGTG
ATATACGGCAAGTGGAAACCCTAA
back to top