mRNA_D-mesarthrocarpus_Contig9782.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9782.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig9782.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig9782.1.1 vs. uniprot
Match: D7FUY8_ECTSI (Similar to Cullin-1 (CUL-1) isoform 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUY8_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 8.740e-13
Identity = 31/32 (96.88%), Postives = 31/32 (96.88%), Query Frame = 1 
Query:    1 SGFEYTSKLQRMFVDKALSRDLHTGYVEWQVR 96
            SGFEYTSKLQRMFVDK LSRDLHTGYVEWQVR
Sbjct:  508 SGFEYTSKLQRMFVDKTLSRDLHTGYVEWQVR 539
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BLAST of mRNA_D-mesarthrocarpus_Contig9782.1.1 vs. uniprot
Match: A0A6H5JUU8_9PHAE (CULLIN_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUU8_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.070e-11
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:    1 SGFEYTSKLQRMFVDKALSRDLHTGYVEWQVREM 102
            SGFEYTSKLQRMFVDK LSRDLHTGYVEWQ + +
Sbjct:  122 SGFEYTSKLQRMFVDKTLSRDLHTGYVEWQEKRI 155
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BLAST of mRNA_D-mesarthrocarpus_Contig9782.1.1 vs. uniprot
Match: A0A835YSZ1_9STRA (Cullin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSZ1_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 8.430e-10
Identity = 26/29 (89.66%), Postives = 28/29 (96.55%), Query Frame = 1 
Query:    1 SGFEYTSKLQRMFVDKALSRDLHTGYVEW 87
            SGFE+TSKLQRMFVDK LSRDLHTGY+EW
Sbjct:  527 SGFEFTSKLQRMFVDKTLSRDLHTGYMEW 555
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BLAST of mRNA_D-mesarthrocarpus_Contig9782.1.1 vs. uniprot
Match: A0A022W404_TRIRU (CULLIN_2 domain-containing protein n=3 Tax=Trichophyton TaxID=5550 RepID=A0A022W404_TRIRU)

HSP 1 Score: 48.9 bits (115), Expect = 1.380e-5
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 1 
Query:    4 GFEYTSKLQRMFVDKALSRDLHTGYVEWQVR 96
            GFEYT+KLQRMF D  +S+DL+T Y EWQ R
Sbjct:  468 GFEYTNKLQRMFQDIQISKDLNTNYREWQER 498
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BLAST of mRNA_D-mesarthrocarpus_Contig9782.1.1 vs. uniprot
Match: D4AZ42_ARTBC (CULLIN_2 domain-containing protein n=17 Tax=Arthrodermataceae TaxID=34384 RepID=D4AZ42_ARTBC)

HSP 1 Score: 48.9 bits (115), Expect = 1.380e-5
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 1 
Query:    4 GFEYTSKLQRMFVDKALSRDLHTGYVEWQVR 96
            GFEYT+KLQRMF D  +S+DL+T Y EWQ R
Sbjct:  450 GFEYTNKLQRMFQDIQISKDLNTNYREWQER 480
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BLAST of mRNA_D-mesarthrocarpus_Contig9782.1.1 vs. uniprot
Match: M2R5E6_COCSN (CULLIN_2 domain-containing protein n=38 Tax=Pleosporales TaxID=92860 RepID=M2R5E6_COCSN)

HSP 1 Score: 48.1 bits (113), Expect = 2.580e-5
Identity = 19/33 (57.58%), Postives = 25/33 (75.76%), Query Frame = 1 
Query:    4 GFEYTSKLQRMFVDKALSRDLHTGYVEWQVREM 102
            GFEYT+KLQRMF D  +S+DL+T + EWQ   +
Sbjct:  486 GFEYTNKLQRMFQDMQISKDLNTAFKEWQANNL 518
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BLAST of mRNA_D-mesarthrocarpus_Contig9782.1.1 vs. uniprot
Match: A0A3N4M1I5_9PEZI (Cullin-domain-containing protein n=1 Tax=Terfezia boudieri ATCC MYA-4762 TaxID=1051890 RepID=A0A3N4M1I5_9PEZI)

HSP 1 Score: 47.4 bits (111), Expect = 4.830e-5
Identity = 19/32 (59.38%), Postives = 24/32 (75.00%), Query Frame = 1 
Query:    4 GFEYTSKLQRMFVDKALSRDLHTGYVEWQVRE 99
            GFEYT+KLQRMF D  +S+DL+  Y EW  +E
Sbjct:  494 GFEYTNKLQRMFQDMQISKDLNDSYKEWSAKE 525
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BLAST of mRNA_D-mesarthrocarpus_Contig9782.1.1 vs. uniprot
Match: A0A8E2EI01_9PEZI (Cullin-domain-containing protein n=2 Tax=Pleosporomycetidae TaxID=451868 RepID=A0A8E2EI01_9PEZI)

HSP 1 Score: 47.4 bits (111), Expect = 4.840e-5
Identity = 19/33 (57.58%), Postives = 25/33 (75.76%), Query Frame = 1 
Query:    4 GFEYTSKLQRMFVDKALSRDLHTGYVEWQVREM 102
            GFEYT+KLQRMF D  +S+DL++ Y EWQ   +
Sbjct:  490 GFEYTNKLQRMFQDMQISKDLNSSYKEWQQENL 522
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BLAST of mRNA_D-mesarthrocarpus_Contig9782.1.1 vs. uniprot
Match: A0A6A6WIR0_9PEZI (Cullin-domain-containing protein n=1 Tax=Pseudovirgaria hyperparasitica TaxID=470096 RepID=A0A6A6WIR0_9PEZI)

HSP 1 Score: 47.4 bits (111), Expect = 4.840e-5
Identity = 18/31 (58.06%), Postives = 26/31 (83.87%), Query Frame = 1 
Query:    4 GFEYTSKLQRMFVDKALSRDLHTGYVEWQVR 96
            GFEYT+KLQRMF D  +S+DL++ Y +WQ++
Sbjct:  490 GFEYTNKLQRMFQDMQISKDLNSSYKDWQMK 520
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BLAST of mRNA_D-mesarthrocarpus_Contig9782.1.1 vs. uniprot
Match: A0A1W5D7P5_9LECA (Cullin n=2 Tax=Lasallia pustulata TaxID=136370 RepID=A0A1W5D7P5_9LECA)

HSP 1 Score: 47.4 bits (111), Expect = 4.840e-5
Identity = 19/33 (57.58%), Postives = 25/33 (75.76%), Query Frame = 1 
Query:    4 GFEYTSKLQRMFVDKALSRDLHTGYVEWQVREM 102
            GFEYT+KLQRMF D  +S+DL+  Y EWQ + +
Sbjct:  487 GFEYTNKLQRMFQDIQISKDLNRNYKEWQAKNL 519
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9782.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7FUY8_ECTSI8.740e-1396.88Similar to Cullin-1 (CUL-1) isoform 1 n=1 Tax=Ecto... [more]
A0A6H5JUU8_9PHAE1.070e-1185.29CULLIN_2 domain-containing protein n=1 Tax=Ectocar... [more]
A0A835YSZ1_9STRA8.430e-1089.66Cullin n=1 Tax=Tribonema minus TaxID=303371 RepID=... [more]
A0A022W404_TRIRU1.380e-567.74CULLIN_2 domain-containing protein n=3 Tax=Trichop... [more]
D4AZ42_ARTBC1.380e-567.74CULLIN_2 domain-containing protein n=17 Tax=Arthro... [more]
M2R5E6_COCSN2.580e-557.58CULLIN_2 domain-containing protein n=38 Tax=Pleosp... [more]
A0A3N4M1I5_9PEZI4.830e-559.38Cullin-domain-containing protein n=1 Tax=Terfezia ... [more]
A0A8E2EI01_9PEZI4.840e-557.58Cullin-domain-containing protein n=2 Tax=Pleosporo... [more]
A0A6A6WIR0_9PEZI4.840e-558.06Cullin-domain-containing protein n=1 Tax=Pseudovir... [more]
A0A1W5D7P5_9LECA4.840e-557.58Cullin n=2 Tax=Lasallia pustulata TaxID=136370 Rep... [more]

Pages

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9782contigD-mesarthrocarpus_Contig9782:253..360 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FUY8
Preferred nameCUL1
PFAMsCullin,Cullin_Nedd8
Model size108
Max annot lvl2759|Eukaryota
KEGG koko:K03347
KEGG Pathwayko04110,ko04111,ko04114,ko04120,ko04141,ko04310,ko04340,ko04341,ko04350,ko04710,ko05168,ko05200,map04110,map04111,map04114,map04120,map04141,map04310,map04340,map04341,map04350,map04710,map05168,map05200
KEGG ModuleM00379,M00380,M00381,M00382,M00387,M00407,M00411
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000082,GO:0000086,GO:0000151,GO:0000152,GO:0000165,GO:0000209,GO:0000278,GO:0002119,GO:0002164,GO:0002252,GO:0002376,GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006275,GO:0006464,GO:0006468,GO:0006508,GO:0006511,GO:0006513,GO:0006793,GO:0006796,GO:0006807,GO:0006873,GO:0006875,GO:0006879,GO:0006915,GO:0006935,GO:0006950,GO:0006952,GO:0007049,GO:0007050,GO:0007154,GO:0007165,GO:0007166,GO:0007267,GO:0007275,GO:0007346,GO:0007399,GO:0007568,GO:0008150,GO:0008152,GO:0008156,GO:0008219,GO:0008283,GO:0008285,GO:0008340,GO:0008361,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009615,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009887,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0009991,GO:0010033,GO:0010259,GO:0010265,GO:0010389,GO:0010498,GO:0010556,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010639,GO:0010646,GO:0010648,GO:0010720,GO:0010824,GO:0010826,GO:0010941,GO:0010942,GO:0010948,GO:0010972,GO:0012501,GO:0014041,GO:0014042,GO:0014066,GO:0014067,GO:0016043,GO:0016055,GO:0016310,GO:0016567,GO:0016740,GO:0019005,GO:0019219,GO:0019221,GO:0019222,GO:0019538,GO:0019725,GO:0019787,GO:0019899,GO:0019941,GO:0022008,GO:0022402,GO:0022607,GO:0023014,GO:0023051,GO:0023052,GO:0023057,GO:0030003,GO:0030111,GO:0030154,GO:0030162,GO:0030163,GO:0030174,GO:0030178,GO:0030587,GO:0030674,GO:0031098,GO:0031146,GO:0031156,GO:0031285,GO:0031286,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031329,GO:0031331,GO:0031461,GO:0031625,GO:0031647,GO:0031667,GO:0031974,GO:0031981,GO:0032006,GO:0032007,GO:0032101,GO:0032102,GO:0032104,GO:0032105,GO:0032107,GO:0032108,GO:0032268,GO:0032270,GO:0032297,GO:0032434,GO:0032436,GO:0032446,GO:0032501,GO:0032502,GO:0032535,GO:0032886,GO:0032991,GO:0033043,GO:0033262,GO:0033554,GO:0034097,GO:0035556,GO:0036211,GO:0038061,GO:0040011,GO:0042127,GO:0042176,GO:0042221,GO:0042330,GO:0042592,GO:0042594,GO:0042981,GO:0043065,GO:0043066,GO:0043067,GO:0043068,GO:0043069,GO:0043161,GO:0043170,GO:0043207,GO:0043224,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043516,GO:0043518,GO:0043565,GO:0043632,GO:0043687,GO:0043900,GO:0043901,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044770,GO:0044772,GO:0044839,GO:0044843,GO:0045595,GO:0045596,GO:0045597,GO:0045664,GO:0045666,GO:0045732,GO:0045786,GO:0045862,GO:0045930,GO:0045934,GO:0046605,GO:0046606,GO:0046626,GO:0046627,GO:0046916,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048878,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0050801,GO:0050896,GO:0051052,GO:0051053,GO:0051093,GO:0051094,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051173,GO:0051239,GO:0051240,GO:0051241,GO:0051246,GO:0051247,GO:0051403,GO:0051493,GO:0051494,GO:0051603,GO:0051607,GO:0051703,GO:0051704,GO:0051707,GO:0051716,GO:0051726,GO:0051960,GO:0051962,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0060090,GO:0060255,GO:0060284,GO:0060548,GO:0060828,GO:0061136,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070498,GO:0070507,GO:0070555,GO:0070647,GO:0070887,GO:0071310,GO:0071345,GO:0071347,GO:0071704,GO:0071840,GO:0075260,GO:0075262,GO:0080090,GO:0080134,GO:0080135,GO:0090066,GO:0090090,GO:0090329,GO:0090702,GO:0097159,GO:0097190,GO:0097193,GO:0098542,GO:0098771,GO:0099120,GO:0140096,GO:0198738,GO:1900076,GO:1900077,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901796,GO:1901797,GO:1901800,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902494,GO:1902531,GO:1902532,GO:1902576,GO:1902749,GO:1902750,GO:1903047,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1903429,GO:1903431,GO:1903463,GO:1903464,GO:1903466,GO:1903467,GO:1904799,GO:1904801,GO:1905114,GO:1990234,GO:1990452,GO:1990837,GO:2000026,GO:2000058,GO:2000060,GO:2000104,GO:2000112,GO:2000113,GO:2000241,GO:2000242,GO:2001020,GO:2001021
Exons1
Evalue1.43e-13
EggNOG OGsCOG5647@1|root,KOG2166@2759|Eukaryota
Descriptionubiquitin protein ligase binding
Cds size108
COG categoryO
BRITEko00000,ko00001,ko00002,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791130.018632-CDS-D-mesarthrocarpus_Contig9782:252..3601680791130.018632-CDS-D-mesarthrocarpus_Contig9782:252..360Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9782 253..360 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9782.1.1prot_D-mesarthrocarpus_Contig9782.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9782 253..360 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9782.1.1

>prot_D-mesarthrocarpus_Contig9782.1.1 ID=prot_D-mesarthrocarpus_Contig9782.1.1|Name=mRNA_D-mesarthrocarpus_Contig9782.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=36bp
SGFEYTSKLQRMFVDKALSRDLHTGYVEWQVREMT*
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mRNA from alignment at D-mesarthrocarpus_Contig9782:253..360+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9782.1.1 ID=mRNA_D-mesarthrocarpus_Contig9782.1.1|Name=mRNA_D-mesarthrocarpus_Contig9782.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=108bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9782:253..360+ (Discosporangium mesarthrocarpum MT17_79)
TCTGGCTTTGAGTACACATCCAAGCTCCAGCGTATGTTTGTGGACAAGGC
CCTCAGCCGGGACCTGCACACAGGCTACGTAGAGTGGCAGGTCAGGGAAA
TGACGTGA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9782:253..360+

>mRNA_D-mesarthrocarpus_Contig9782.1.1 ID=mRNA_D-mesarthrocarpus_Contig9782.1.1|Name=mRNA_D-mesarthrocarpus_Contig9782.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=108bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9782:253..360+ (Discosporangium mesarthrocarpum MT17_79)
TCTGGCTTTGAGTACACATCCAAGCTCCAGCGTATGTTTGTGGACAAGGC
CCTCAGCCGGGACCTGCACACAGGCTACGTAGAGTGGCAGGTCAGGGAAA
TGACGTGA
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