mRNA_D-mesarthrocarpus_Contig9762.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9762.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig9762.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9762.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9762contigD-mesarthrocarpus_Contig9762:752..2728 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size407
Hectar predicted targeting categoryother localisation
Exons3
Cds size405
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791127.8873436-CDS-D-mesarthrocarpus_Contig9762:752..8331680791127.8873436-CDS-D-mesarthrocarpus_Contig9762:752..833Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9762 753..833 -
1680791127.8994746-CDS-D-mesarthrocarpus_Contig9762:1704..18181680791127.8994746-CDS-D-mesarthrocarpus_Contig9762:1704..1818Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9762 1705..1818 -
1680791127.911225-CDS-D-mesarthrocarpus_Contig9762:2518..27281680791127.911225-CDS-D-mesarthrocarpus_Contig9762:2518..2728Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9762 2519..2728 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9762.1.1prot_D-mesarthrocarpus_Contig9762.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9762 753..2728 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9762.1.1

>prot_D-mesarthrocarpus_Contig9762.1.1 ID=prot_D-mesarthrocarpus_Contig9762.1.1|Name=mRNA_D-mesarthrocarpus_Contig9762.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=135bp
GAGFPHLQEGIARISGAEAQAQGALGASMTELRGRMRDAVRVVELVEGIA
RNCPRGFQVAEASLFRCRTLEWLREVGLARLAGVLQDKGLVLEDLLGEDL
SAMPQGALEELHSAGGVEALLEAARALPDPLPLRD
back to top

mRNA from alignment at D-mesarthrocarpus_Contig9762:752..2728-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9762.1.1 ID=mRNA_D-mesarthrocarpus_Contig9762.1.1|Name=mRNA_D-mesarthrocarpus_Contig9762.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1977bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9762:752..2728- (Discosporangium mesarthrocarpum MT17_79)
GGGGCGGGGTTTCCTCACCTGCAGGAGGGCATTGCCAGGATCTCTGGGGC
TGAGGCTCAAGCCCAGGGTGCCCTGGGGGCATCCATGACTGAGCTCCGTG
GCCGCATGAGGGATGCCGTGAGGGTGGTGGAGCTGGTGGAGGGCATAGCG
CGCAACTGCCCCCGGGGGTTTCAGGTTGCGGAGGCGAGCCTTTTCCGCTG
CAGAACTTTGGTGAGAAGGTCTTTTTGTTTCTGTTTGCTTGAGGGTGTGG
AAGGGGAGAGAGGGGGAGTCTAGCTAGGGAGAGGGATAGGGGGAAGGAAA
GGGGAAGGTGAAGGGTATGGGGAAGGGGAAGGGAAGCCTTGGACAGCTAG
GCAACCTTGGGGTGCCTGGGGTTGGGAAGCCTGTGTGCGTCCCCTTCCTT
TCCTTTGTTCTTGTCTTTGTTTCTGATTTTCCGTCATCTCTGTCATACAT
ATATATATGTATATATGTATATATGTGTATATACTGCTATTACTTAGAGA
GAAAGAGAGGTTACAGTTACATTAGATTACAGCATCTCGAGTGTCTATTC
CAACAGCAAACGACCTCATTCTTCAACCTTTAGGGCCATTTGGACATCCT
CTCATCGTGTACTTGCCCATGGGCAAAGGGTAGACAAAGAAGGTCTTTGC
CAACACCCTAACGCACCCCTGACAACTAGTAGTCCCCTATAACCCCAAGT
CAAGCAGCACAACTCTGCGAGGAAAAGTGGCCATGTGGCAGGGCATGTGC
CGGTCAACAATTCTGAACGCACCTGAAATACAAAAAATGTGTCCGTAACT
AGCACTCTGGAGCGGCTCATGAAAAAAATGAGAGAGAAGAAACAAGAAAT
TATTTTAACTCTCCACAACACGTGCCCTCCCCCCTACCGCAAATGGCGGT
GATCGTTTAGGAGTGGCTTAGGGAGGTGGGATTGGCTCGCCTGGCGGGGG
TGCTGCAGGACAAGGGCCTGGTGCTGGAGGATCTCCTGGGGGAGGACCTC
TCCGCAATGCCTCAGGGGGCTTTGGTGGGTGCCGTGCCAAGACTTGGGCA
CAGTGTAGTATACCATCTCTTTGGGGGGGGGGAATCTAGCTGTCGAAGAG
CTCTGGGACGAGGGAATAGGGGCTGTCTACCTTAATTGAGAGGGGTCTCA
GGGGAGGAAAAGTCCAGAGAGCTACTTCTATGGTCTTGTGTCCTCCGCTG
AAGAGGCAAAGGAGAAGCTTATCTTTTTGCTTGTCGGGCCTTGCTTGTTC
TGGACGAGTGCAGTGACATAACGTTGGGGGTTGGTATGGTTTGCCAGGGT
TGAGATCGGGTCCATCTGCGTTGAGATTTGTTTTTTTCAGGGGTCGCGGG
GCTTATGCTCAGGAAGCTGCCCTGAACAGACGCATTTCCAGGAGAGAGGC
CTGTGTCCCAGAAGAGATCCGTTTCTAAGAGGAGAGATCTGCACTGTCTG
TATGCCTGGCGTGTCGCTGTGCTGGTCGTAAGACTGGGTCGCAAGAGGAC
TGGTTGCTTGGGCCTTTGCCTTCAGCACTTTGCTGTGTGTGCTGTGCATG
TGCATAGAGTATTTGTATGCACATACCTTGAAGTATATCCATGTGCATAG
TGCTTGATATGCTACTGTAAGTGATTATTGCTTCATGGGATTGTTGCTTC
ATGTGATTGTTGGTTCATGTCTGTAGCCCTCCTACTTTGTGGTGAGCAGG
AAGAGAAATGCCTTCCAGTATACTGCAGCGAACAGTACCAAAAACGGCGG
TGAGAACGCCGCCATTACAAGCATGGCCACCACCACCACCACCACCACCA
CCACCAAACAACAAAAAATGACCAAAATTGACCAATACAAACAAAAAGTG
ACCAATAAAAACAAAACCTGACCAAAAAATGACCAATAAAAACAGGAGGA
GTTGCACAGTGCTGGTGGGGTCGAGGCCCTGCTCGAGGCAGCGAGGGCGC
TGCCGGATCCCCTCCCCCTCAGGGATG
back to top

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9762:752..2728-

>mRNA_D-mesarthrocarpus_Contig9762.1.1 ID=mRNA_D-mesarthrocarpus_Contig9762.1.1|Name=mRNA_D-mesarthrocarpus_Contig9762.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=405bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9762:752..2728- (Discosporangium mesarthrocarpum MT17_79)
GGGGCGGGGTTTCCTCACCTGCAGGAGGGCATTGCCAGGATCTCTGGGGC
TGAGGCTCAAGCCCAGGGTGCCCTGGGGGCATCCATGACTGAGCTCCGTG
GCCGCATGAGGGATGCCGTGAGGGTGGTGGAGCTGGTGGAGGGCATAGCG
CGCAACTGCCCCCGGGGGTTTCAGGTTGCGGAGGCGAGCCTTTTCCGCTG
CAGAACTTTGGAGTGGCTTAGGGAGGTGGGATTGGCTCGCCTGGCGGGGG
TGCTGCAGGACAAGGGCCTGGTGCTGGAGGATCTCCTGGGGGAGGACCTC
TCCGCAATGCCTCAGGGGGCTTTGGAGGAGTTGCACAGTGCTGGTGGGGT
CGAGGCCCTGCTCGAGGCAGCGAGGGCGCTGCCGGATCCCCTCCCCCTCA
GGGAT
back to top