mRNA_D-mesarthrocarpus_Contig9750.3.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9750.3.1
Unique NamemRNA_D-mesarthrocarpus_Contig9750.3.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig9750.3.1 vs. uniprot
Match: D7G160_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G160_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 1.420e-20
Identity = 50/77 (64.94%), Postives = 58/77 (75.32%), Query Frame = 1
Query:    1 VRAVSRARVPVVKMVSSLR--GPDSMPLKCDISINNLVAVHNTRLLRLYTLLDVRVRQLLYLVKAWSKARAVNDSSK 225
            V AV R+RVPVVK     R  GP   P++CDIS+NNLVAVHNTRL++ YT LD R  +LLYLVKAW+KAR V DSSK
Sbjct:  555 VMAVHRSRVPVVKTCVPRRLWGPAGRPIECDISVNNLVAVHNTRLVKAYTDLDPRCHRLLYLVKAWAKARGVGDSSK 631          
BLAST of mRNA_D-mesarthrocarpus_Contig9750.3.1 vs. uniprot
Match: A0A6H5K7K2_9PHAE (NTP_transf_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7K2_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 1.420e-20
Identity = 50/77 (64.94%), Postives = 58/77 (75.32%), Query Frame = 1
Query:    1 VRAVSRARVPVVKMVSSLR--GPDSMPLKCDISINNLVAVHNTRLLRLYTLLDVRVRQLLYLVKAWSKARAVNDSSK 225
            V AV R+RVPVVK     R  GP   P++CDIS+NNLVAVHNTRL++ YT LD R  +LLYLVKAW+KAR V DSSK
Sbjct:  563 VMAVHRSRVPVVKTCVPRRLWGPAGRPIECDISVNNLVAVHNTRLVKAYTDLDPRCHRLLYLVKAWAKARGVGDSSK 639          
BLAST of mRNA_D-mesarthrocarpus_Contig9750.3.1 vs. uniprot
Match: A0A843U1A5_COLES (Uncharacterized protein (Fragment) n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843U1A5_COLES)

HSP 1 Score: 79.0 bits (193), Expect = 1.660e-15
Identity = 40/73 (54.79%), Postives = 55/73 (75.34%), Query Frame = 1
Query:    1 VRAVSRARVPVVKMVSSLRGPDSMPLKCDISINNLVAVHNTRLLRLYTLLDVRVRQLLYLVKAWSKARAVNDS 219
            V+A++RARVP+VK++  L G     L CDI INN++AV NT+LLR Y  +DVR+RQL ++VK W+K R VND+
Sbjct:  123 VQALTRARVPIVKLMDPLTG-----LSCDICINNILAVVNTKLLRDYAKIDVRLRQLAFIVKHWAKKRGVNDT 190          
BLAST of mRNA_D-mesarthrocarpus_Contig9750.3.1 vs. uniprot
Match: UPI001BF3888A (Uncharacterized protein n=1 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001BF3888A)

HSP 1 Score: 77.8 bits (190), Expect = 4.960e-15
Identity = 38/73 (52.05%), Postives = 56/73 (76.71%), Query Frame = 1
Query:    1 VRAVSRARVPVVKMVSSLRGPDSMPLKCDISINNLVAVHNTRLLRLYTLLDVRVRQLLYLVKAWSKARAVNDS 219
            V+A++RARVP+VK++  + G     L CDI INN++AV NT+LLR Y L+D R+RQL ++VK W+K+R VN++
Sbjct:  531 VQALTRARVPIVKLMDPVTG-----LSCDICINNILAVVNTKLLRDYALIDARLRQLAFIVKHWAKSRGVNET 598          
BLAST of mRNA_D-mesarthrocarpus_Contig9750.3.1 vs. uniprot
Match: A0A7J8NKX0_9ROSI (TUTase domain-containing protein (Fragment) n=1 Tax=Gossypium lobatum TaxID=34289 RepID=A0A7J8NKX0_9ROSI)

HSP 1 Score: 76.3 bits (186), Expect = 6.630e-15
Identity = 38/71 (53.52%), Postives = 54/71 (76.06%), Query Frame = 1
Query:    1 VRAVSRARVPVVKMVSSLRGPDSMPLKCDISINNLVAVHNTRLLRLYTLLDVRVRQLLYLVKAWSKARAVN 213
            V+A++RARVP+VK++  L G     + CDI +NN++AV NTRLLR Y  +DVR+RQL ++VK W+K+R VN
Sbjct:  205 VQALTRARVPIVKLMDPLTG-----ISCDICVNNVLAVVNTRLLRDYAKIDVRLRQLAFIVKHWAKSRGVN 270          
BLAST of mRNA_D-mesarthrocarpus_Contig9750.3.1 vs. uniprot
Match: UPI0006AB3F4E (UTP:RNA uridylyltransferase 1-like n=1 Tax=Brassica napus TaxID=3708 RepID=UPI0006AB3F4E)

HSP 1 Score: 77.0 bits (188), Expect = 8.190e-15
Identity = 36/73 (49.32%), Postives = 58/73 (79.45%), Query Frame = 1
Query:    1 VRAVSRARVPVVKMVSSLRGPDSMPLKCDISINNLVAVHNTRLLRLYTLLDVRVRQLLYLVKAWSKARAVNDS 219
            V+A++RARVP+VK++  + G     + CDI INN++AV NT+LLR Y+++D+R+RQL ++VK W+K+R VN++
Sbjct:  178 VQALTRARVPIVKLMDPVTG-----ISCDICINNVLAVVNTKLLRDYSMIDIRLRQLAFIVKHWAKSRKVNET 245          
BLAST of mRNA_D-mesarthrocarpus_Contig9750.3.1 vs. uniprot
Match: A0A5B7B3X9_DAVIN (Uncharacterized protein (Fragment) n=3 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7B3X9_DAVIN)

HSP 1 Score: 77.0 bits (188), Expect = 9.090e-15
Identity = 38/73 (52.05%), Postives = 56/73 (76.71%), Query Frame = 1
Query:    1 VRAVSRARVPVVKMVSSLRGPDSMPLKCDISINNLVAVHNTRLLRLYTLLDVRVRQLLYLVKAWSKARAVNDS 219
            V+A++RARVP+VK++  + G     + CDI INNL+AV NT+LLR Y  +DVR+RQL ++VK W+K+R VN++
Sbjct:  285 VQALTRARVPIVKLMDPVTG-----ISCDICINNLLAVVNTKLLRDYAQIDVRLRQLAFIVKHWAKSRGVNET 352          
BLAST of mRNA_D-mesarthrocarpus_Contig9750.3.1 vs. uniprot
Match: UPI001CB93AC5 (UTP:RNA uridylyltransferase 1 n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB93AC5)

HSP 1 Score: 77.0 bits (188), Expect = 9.250e-15
Identity = 37/73 (50.68%), Postives = 57/73 (78.08%), Query Frame = 1
Query:    1 VRAVSRARVPVVKMVSSLRGPDSMPLKCDISINNLVAVHNTRLLRLYTLLDVRVRQLLYLVKAWSKARAVNDS 219
            V+A++RARVP+VK++  + G     + CDI +NNL+AV NT+LLR Y+ +DVR+RQL ++VK W+K+R VN++
Sbjct:  423 VQALTRARVPIVKLMDPVTG-----ISCDICVNNLLAVINTKLLRDYSKIDVRLRQLAFIVKHWAKSRGVNET 490          
BLAST of mRNA_D-mesarthrocarpus_Contig9750.3.1 vs. uniprot
Match: A0A5N6MVH1_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6MVH1_9ASTR)

HSP 1 Score: 77.0 bits (188), Expect = 9.280e-15
Identity = 37/73 (50.68%), Postives = 57/73 (78.08%), Query Frame = 1
Query:    1 VRAVSRARVPVVKMVSSLRGPDSMPLKCDISINNLVAVHNTRLLRLYTLLDVRVRQLLYLVKAWSKARAVNDS 219
            V+A++RARVP+VK++  + G     + CDI +NNL+AV NT+LLR Y+ +DVR+RQL ++VK W+K+R VN++
Sbjct:  479 VQALTRARVPIVKLMDPVTG-----ISCDICVNNLLAVINTKLLRDYSKIDVRLRQLAFIVKHWAKSRGVNET 546          
BLAST of mRNA_D-mesarthrocarpus_Contig9750.3.1 vs. uniprot
Match: UPI001CFC13D0 (UTP:RNA uridylyltransferase 1 n=1 Tax=Mangifera indica TaxID=29780 RepID=UPI001CFC13D0)

HSP 1 Score: 77.0 bits (188), Expect = 9.280e-15
Identity = 38/73 (52.05%), Postives = 56/73 (76.71%), Query Frame = 1
Query:    1 VRAVSRARVPVVKMVSSLRGPDSMPLKCDISINNLVAVHNTRLLRLYTLLDVRVRQLLYLVKAWSKARAVNDS 219
            V+A++RARVP+VK++  + G     + CDI INNL+AV NT+LLR Y  +DVR+RQL ++VK W+K+R VN++
Sbjct:  486 VQALTRARVPIVKLMDPVTG-----ISCDICINNLLAVVNTKLLRDYAQIDVRLRQLAFIVKHWAKSRGVNET 553          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9750.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G160_ECTSI1.420e-2064.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7K2_9PHAE1.420e-2064.94NTP_transf_2 domain-containing protein n=1 Tax=Ect... [more]
A0A843U1A5_COLES1.660e-1554.79Uncharacterized protein (Fragment) n=1 Tax=Colocas... [more]
UPI001BF3888A4.960e-1552.05Uncharacterized protein n=1 Tax=Carya illinoinensi... [more]
A0A7J8NKX0_9ROSI6.630e-1553.52TUTase domain-containing protein (Fragment) n=1 Ta... [more]
UPI0006AB3F4E8.190e-1549.32UTP:RNA uridylyltransferase 1-like n=1 Tax=Brassic... [more]
A0A5B7B3X9_DAVIN9.090e-1552.05Uncharacterized protein (Fragment) n=3 Tax=Davidia... [more]
UPI001CB93AC59.250e-1550.68UTP:RNA uridylyltransferase 1 n=1 Tax=Erigeron can... [more]
A0A5N6MVH1_9ASTR9.280e-1550.68Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]
UPI001CFC13D09.280e-1552.05UTP:RNA uridylyltransferase 1 n=1 Tax=Mangifera in... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9750contigD-mesarthrocarpus_Contig9750:2656..3608 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G160
PFAMsDNA_pol_A_exo1,NTP_transf_2,PAP_assoc
Model size225
Max annot lvl2759|Eukaryota
KEGG koko:K13291
Hectar predicted targeting categorymitochondrion
Exons2
Evalue2.33e-21
EggNOG OGsCOG5260@1|root,KOG2277@2759|Eukaryota
Ec32 ortholog descriptionNucleotidyl transferase domain
Ec32 orthologEc-22_000020.1
EC2.7.7.52
DescriptionRNA uridylyltransferase activity
Cds size225
COG categoryL
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791127.1586096-CDS-D-mesarthrocarpus_Contig9750:2655..27301680791127.1586096-CDS-D-mesarthrocarpus_Contig9750:2655..2730Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9750 2656..2730 -
1680791127.180433-CDS-D-mesarthrocarpus_Contig9750:3458..36081680791127.180433-CDS-D-mesarthrocarpus_Contig9750:3458..3608Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9750 3459..3608 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9750.3.1prot_D-mesarthrocarpus_Contig9750.3.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9750 2656..3608 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9750.3.1

>prot_D-mesarthrocarpus_Contig9750.3.1 ID=prot_D-mesarthrocarpus_Contig9750.3.1|Name=mRNA_D-mesarthrocarpus_Contig9750.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=75bp
VRAVSRARVPVVKMVSSLRGPDSMPLKCDISINNLVAVHNTRLLRLYTLL
DVRVRQLLYLVKAWSKARAVNDSSK
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mRNA from alignment at D-mesarthrocarpus_Contig9750:2656..3608-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9750.3.1 ID=mRNA_D-mesarthrocarpus_Contig9750.3.1|Name=mRNA_D-mesarthrocarpus_Contig9750.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=953bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9750:2656..3608- (Discosporangium mesarthrocarpum MT17_79)
GTGCGTGCAGTATCGCGGGCAAGGGTGCCCGTGGTGAAGATGGTGTCCTC CCTCCGGGGCCCCGACAGCATGCCCCTGAAGTGCGACATCAGCATCAACA ACCTGGTCGCCGTGCACAACACCCGCCTTCTGCGCCTCTACACCCTGCTT GTGAGCGCACATCTGGGGTTCGTTTTTTTGGTGGGGGGAGTGCTGTTTGC TGTAGTTTTTTTACCGTGTGTTTTAGATGTTTTCATGTTTGTGCTCGTGC TGTATGCTACAGGAGAGCTGTAGAGGCTCTGGAGCCATAGAGGCTCTGGA GCCGTAGAGCTCATCAGTCTCCCTCTTTTGCCTCCTGGTCGACTTCCTGT TCCATCCAGGGCAGAGCCCCAGGGTCCCTTTCTTTATTGCGTCCTGTGGG TTAGGGTTAGGGTGTGTGGAGTTGAACCTGTTTTGGGGGTTAAAAAGTTT TGTTTATGATGCTTCCAAAGCATGAGTCACAATGCACAGGGGTTCAGAGC TCTGTGACAAGCTTTTCTCTGCATGAGACATAACTCTATCTAGTGCAAGT CCTTTGGAGTGCTGCTGTAAATATTTGGAAGCACTTGGAGGTGCATACTG GTAAATAGGTGTATGTATGTGAATATATACTGGGAAGTGCTTTAAAGTAC TTCATTGTGCATAGATATACATCTACACCTATGTTTGAAATATACTTTGA AGTACTTTAAAGTGCTCGGGAGTAAGTGGGTATACCCTATGTCTATAAAT GAAATGCTTGGACCTACTGGCAGTGGATAGCAATGCAGGTCGTCCTCCTG TCCTGTGCTTTGGGTGGTATGCATGCCTGTGTATTTTTTCTTCTTTCTTG ATCATTTTTTAATTTTTGCTTGTGGCAGGATGTGAGGGTCAGGCAGCTGC TGTACCTTGTCAAGGCCTGGAGCAAGGCAAGGGCGGTGAATGACTCCAGC AAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9750:2656..3608-

>mRNA_D-mesarthrocarpus_Contig9750.3.1 ID=mRNA_D-mesarthrocarpus_Contig9750.3.1|Name=mRNA_D-mesarthrocarpus_Contig9750.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=225bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9750:2656..3608- (Discosporangium mesarthrocarpum MT17_79)
GTGCGTGCAGTATCGCGGGCAAGGGTGCCCGTGGTGAAGATGGTGTCCTC
CCTCCGGGGCCCCGACAGCATGCCCCTGAAGTGCGACATCAGCATCAACA
ACCTGGTCGCCGTGCACAACACCCGCCTTCTGCGCCTCTACACCCTGCTT
GATGTGAGGGTCAGGCAGCTGCTGTACCTTGTCAAGGCCTGGAGCAAGGC
AAGGGCGGTGAATGACTCCAGCAAG
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