mRNA_D-mesarthrocarpus_Contig9747.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9747.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig9747.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig9747.1.1 vs. uniprot
Match: A0A523DU62_9BACT (Integrase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A523DU62_9BACT)

HSP 1 Score: 58.2 bits (139), Expect = 1.270e-9
Identity = 23/38 (60.53%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    4 RDSPKSRAIQCRPSSKAEVIGISKVGGLHHRYEWREAA 117
            +D P SR ++ RPS +A+V+ + +VGGLHHRYEWREAA
Sbjct:   95 KDPPNSRPVRPRPSPEAKVVALPRVGGLHHRYEWREAA 132
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BLAST of mRNA_D-mesarthrocarpus_Contig9747.1.1 vs. uniprot
Match: A0A2D6MLQ8_9DELT (Integrase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2D6MLQ8_9DELT)

HSP 1 Score: 58.2 bits (139), Expect = 8.800e-9
Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    1 LRDSPKSRAIQCRPSSKAEVIGISKVGGLHHRYEWREAA 117
            LRDSP  R  + RPS  A+V G+S+VGGLHHRY W+EAA
Sbjct:  309 LRDSPMGRPTEPRPSLNAQVAGLSRVGGLHHRYGWQEAA 347
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BLAST of mRNA_D-mesarthrocarpus_Contig9747.1.1 vs. uniprot
Match: A0A7C7ZJU5_9DELT (Integrase n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7C7ZJU5_9DELT)

HSP 1 Score: 58.2 bits (139), Expect = 8.950e-9
Identity = 23/39 (58.97%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    1 LRDSPKSRAIQCRPSSKAEVIGISKVGGLHHRYEWREAA 117
            LRDSP  R  + RPS  A+++G+ +VGGLHHRY WR+AA
Sbjct:  328 LRDSPAGRPTEDRPSRNAQIVGLPRVGGLHHRYVWRDAA 366
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BLAST of mRNA_D-mesarthrocarpus_Contig9747.1.1 vs. uniprot
Match: A0A523EEN3_9BACT (Integrase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A523EEN3_9BACT)

HSP 1 Score: 52.8 bits (125), Expect = 8.530e-8
Identity = 22/38 (57.89%), Postives = 27/38 (71.05%), Query Frame = 1 
Query:    4 RDSPKSRAIQCRPSSKAEVIGISKVGGLHHRYEWREAA 117
            +D+P  R    RPSS A V+ + +VGG HHRYEWREAA
Sbjct:   64 KDTPNERDATPRPSSTARVVALPRVGGPHHRYEWREAA 101
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BLAST of mRNA_D-mesarthrocarpus_Contig9747.1.1 vs. uniprot
Match: A0A0S7Z8S1_9BACT (Integrase catalytic domain-containing protein n=1 Tax=Gemmatimonas sp. SG8_23 TaxID=1703356 RepID=A0A0S7Z8S1_9BACT)

HSP 1 Score: 53.5 bits (127), Expect = 1.720e-7
Identity = 20/39 (51.28%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:    1 LRDSPKSRAIQCRPSSKAEVIGISKVGGLHHRYEWREAA 117
            + D+P+ R  + RPS+ A V+ + +VGGLHHRY WR+AA
Sbjct:  143 IGDAPEGRRAEARPSANAAVVALPRVGGLHHRYAWRDAA 181
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BLAST of mRNA_D-mesarthrocarpus_Contig9747.1.1 vs. uniprot
Match: A0A523KKE4_9DELT (DDE domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A523KKE4_9DELT)

HSP 1 Score: 54.3 bits (129), Expect = 2.050e-7
Identity = 21/39 (53.85%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:    1 LRDSPKSRAIQCRPSSKAEVIGISKVGGLHHRYEWREAA 117
            + D+P  R ++ RPS+ A V+ + +VGGLHHRY WREAA
Sbjct:  309 IGDAPVGRPVESRPSADARVVSLPRVGGLHHRYVWREAA 347
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BLAST of mRNA_D-mesarthrocarpus_Contig9747.1.1 vs. uniprot
Match: A0A1H2K9L2_9DELT (Integrase core domain-containing protein n=1 Tax=Desulfobacula phenolica TaxID=90732 RepID=A0A1H2K9L2_9DELT)

HSP 1 Score: 53.1 bits (126), Expect = 2.430e-7
Identity = 22/38 (57.89%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    4 RDSPKSRAIQCRPSSKAEVIGISKVGGLHHRYEWREAA 117
            +DSP  R +Q +P S+ +VIG+++VGGLHHRYEWR+ A
Sbjct:  146 KDSPLGRPVQKKPESR-KVIGLNRVGGLHHRYEWRKTA 182
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BLAST of mRNA_D-mesarthrocarpus_Contig9747.1.1 vs. uniprot
Match: A0A2V8DRS1_9BACT (Transposase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8DRS1_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 3.210e-7
Identity = 21/38 (55.26%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:    4 RDSPKSRAIQCRPSSKAEVIGISKVGGLHHRYEWREAA 117
            +D P  R++  RPS +++V+GI +VGGLHHRYEW +AA
Sbjct:  171 KDPPLYRSVAERPSPQSKVVGIPRVGGLHHRYEWSQAA 208
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BLAST of mRNA_D-mesarthrocarpus_Contig9747.1.1 vs. uniprot
Match: A0A6J4XDF0_9DELT (Integrase catalytic domain-containing protein n=1 Tax=Olavius sp. associated proteobacterium Delta 1 TaxID=698986 RepID=A0A6J4XDF0_9DELT)

HSP 1 Score: 52.8 bits (125), Expect = 4.270e-7
Identity = 23/38 (60.53%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:    4 RDSPKSRAIQCRPSSKAEVIGISKVGGLHHRYEWREAA 117
            +D+P  R  Q RPS  A+VI +  VGGLHHRYEW+EAA
Sbjct:  166 KDTPDERPAQPRPSMGAKVIELPLVGGLHHRYEWKEAA 203
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BLAST of mRNA_D-mesarthrocarpus_Contig9747.1.1 vs. uniprot
Match: A0A523EB66_9BACT (Integrase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A523EB66_9BACT)

HSP 1 Score: 50.4 bits (119), Expect = 6.310e-7
Identity = 20/38 (52.63%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:    4 RDSPKSRAIQCRPSSKAEVIGISKVGGLHHRYEWREAA 117
            +D+P  R I  R S +A+V+ + ++G LHHRYEWREAA
Sbjct:   60 KDTPDERPITPRSSPRAKVVALPRMGSLHHRYEWREAA 97
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9747.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A523DU62_9BACT1.270e-960.53Integrase n=1 Tax=Acidobacteria bacterium TaxID=19... [more]
A0A2D6MLQ8_9DELT8.800e-964.10Integrase n=1 Tax=Deltaproteobacteria bacterium Ta... [more]
A0A7C7ZJU5_9DELT8.950e-958.97Integrase n=1 Tax=Myxococcales bacterium TaxID=202... [more]
A0A523EEN3_9BACT8.530e-857.89Integrase n=1 Tax=Acidobacteria bacterium TaxID=19... [more]
A0A0S7Z8S1_9BACT1.720e-751.28Integrase catalytic domain-containing protein n=1 ... [more]
A0A523KKE4_9DELT2.050e-753.85DDE domain-containing protein n=1 Tax=Deltaproteob... [more]
A0A1H2K9L2_9DELT2.430e-757.89Integrase core domain-containing protein n=1 Tax=D... [more]
A0A2V8DRS1_9BACT3.210e-755.26Transposase n=1 Tax=Acidobacteria bacterium TaxID=... [more]
A0A6J4XDF0_9DELT4.270e-760.53Integrase catalytic domain-containing protein n=1 ... [more]
A0A523EB66_9BACT6.310e-752.63Integrase n=1 Tax=Acidobacteria bacterium TaxID=19... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9747contigD-mesarthrocarpus_Contig9747:3..122 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1121396.KB893120_gene3067
Model size120
Max annot lvl28221|Deltaproteobacteria
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue2.13e-07
EggNOG OGsCOG2801@1|root,COG2801@2|Bacteria,1P5SB@1224|Proteobacteria,42YNG@68525|delta/epsilon subdivisions,2WU6B@28221|Deltaproteobacteria,2MN61@213118|Desulfobacterales
DescriptionIntegrase
Cds size120
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791127.0436614-CDS-D-mesarthrocarpus_Contig9747:2..1221680791127.0436614-CDS-D-mesarthrocarpus_Contig9747:2..122Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9747 3..122 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9747.1.1prot_D-mesarthrocarpus_Contig9747.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9747 3..122 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9747.1.1

>prot_D-mesarthrocarpus_Contig9747.1.1 ID=prot_D-mesarthrocarpus_Contig9747.1.1|Name=mRNA_D-mesarthrocarpus_Contig9747.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=40bp
LRDSPKSRAIQCRPSSKAEVIGISKVGGLHHRYEWREAA*
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mRNA from alignment at D-mesarthrocarpus_Contig9747:3..122+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9747.1.1 ID=mRNA_D-mesarthrocarpus_Contig9747.1.1|Name=mRNA_D-mesarthrocarpus_Contig9747.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=120bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9747:3..122+ (Discosporangium mesarthrocarpum MT17_79)
CTGCGAGATTCGCCGAAAAGCCGAGCCATTCAGTGCCGACCTTCGTCGAA
AGCCGAGGTGATCGGCATTTCAAAGGTTGGTGGCCTTCATCATCGCTACG
AATGGCGAGAAGCAGCCTGA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9747:3..122+

>mRNA_D-mesarthrocarpus_Contig9747.1.1 ID=mRNA_D-mesarthrocarpus_Contig9747.1.1|Name=mRNA_D-mesarthrocarpus_Contig9747.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=120bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9747:3..122+ (Discosporangium mesarthrocarpum MT17_79)
CTGCGAGATTCGCCGAAAAGCCGAGCCATTCAGTGCCGACCTTCGTCGAA
AGCCGAGGTGATCGGCATTTCAAAGGTTGGTGGCCTTCATCATCGCTACG
AATGGCGAGAAGCAGCCTGA
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