mRNA_D-mesarthrocarpus_Contig9461.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9461.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig9461.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig9461.1.1 vs. uniprot
Match: D7FSF5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSF5_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 1.170e-26
Identity = 71/136 (52.21%), Postives = 76/136 (55.88%), Query Frame = 1 
Query:    1 TLEHGQREVRSIVGSVLLTQLRTNYHNHLAQVQGEQYLFALVLHAIRTRIEGS----GLARAVPGGPRXXXXXXXXXXXHGSCSELNDLIAFDSWVPGIGPACPGCGRGTDSSCPLCGGTGVSLSELGLLVNDDEK 396
            TLEHGQRE+RSIVGSVLL+QLRT YHNHLAQVQGEQYLFALVL AIRT IEG     G      GG R                            P    +CPGCGR  D       GTGVSLSELG +   D+K
Sbjct:  186 TLEHGQREIRSIVGSVLLSQLRTTYHNHLAQVQGEQYLFALVLQAIRTHIEGGCGGVGCKNGGDGGGRGGDKR-----------------------PSASSSCPGCGRTADPXXXXXXGTGVSLSELGFVDGHDKK 298
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BLAST of mRNA_D-mesarthrocarpus_Contig9461.1.1 vs. uniprot
Match: A0A6H5JR47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR47_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 3.580e-9
Identity = 129/280 (46.07%), Postives = 141/280 (50.36%), Query Frame = 1 
Query:  277 PGIGPACPGCGRGTDSSCPLCGGTGVSLSELGLLVNDDEKKSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAR------------------GRRRGG--ECSSGRDSSSXXXXXXXXXXXRNQRXXXXXXXXXXXGVGDMGGSGERRYVAGDNMDMPSREHSGPGKRRGSTGAAAGGVGMVGKGLGIGSSAGSLLSML---GGGAEGDTGGFGD----------DEGIXXXXXXXXXXXMERLRRLKARADVQRSRAALRSNLRKNFDQLL 1017
            P    +CPGCGR  D +CP+CGGTGVSLSELGL+   D+K  +XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   A                   G+R  G  E + GR  S              Q+XXXXXXXXXXX                              +R GS G                 SAGSLLSML    GGA G  GG  D          D GI           MERL+  KAR DVQRSRAALRSNL+KNFDQLL
Sbjct:   18 PSASSSCPGCGRTADPACPMCGGTGVSLSELGLVDGHDKKAKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEMEAATTAAKXXXXXXXXXXSNGGQRANGHQETAGGRSHSQPQDNKGGGSKPNGQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR----QRAGSCGM---------------ESAGSLLSMLDDANGGANGGGGGRHDGDLFDYYEDGDSGIDEDIVRE----MERLKMQKARTDVQRSRAALRSNLQKNFDQLL 274
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BLAST of mRNA_D-mesarthrocarpus_Contig9461.1.1 vs. uniprot
Match: W7TQZ3_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQZ3_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 5.060e-9
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    1 TLEHGQREVRSIVGSVLLTQLRTNYHNHLAQVQGEQYLFALVLHAIRTRI 150
            TLEHGQREVR+I+GSVLL+QLR  +H   A  Q E YLFAL + AIRT++
Sbjct:  208 TLEHGQREVRAIIGSVLLSQLRAAWHQQTAHAQSEHYLFALAMQAIRTQL 257
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BLAST of mRNA_D-mesarthrocarpus_Contig9461.1.1 vs. uniprot
Match: A0A4D9CZ38_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZ38_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 5.500e-9
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    1 TLEHGQREVRSIVGSVLLTQLRTNYHNHLAQVQGEQYLFALVLHAIRTRI 150
            TLEHGQREVR+I+GSVLL+QLR  +H   A  Q E YLFAL + AIRT++
Sbjct:  305 TLEHGQREVRAIIGSVLLSQLRAAWHQQTAHAQSEHYLFALAMQAIRTQL 354
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BLAST of mRNA_D-mesarthrocarpus_Contig9461.1.1 vs. uniprot
Match: D7FQ14_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ14_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 8.950e-9
Identity = 32/56 (57.14%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:    1 TLEHGQREVRSIVGSVLLTQLRTNYHNHLAQVQGEQYLFALVLHAIRTRIEGSGLA 168
            TL+ GQREVRSI+G ++L+QLR+ +H   AQVQ EQYLF LV+ A+RT +   G A
Sbjct:   37 TLDQGQREVRSILGGLVLSQLRSVWHTQTAQVQAEQYLFCLVVDAVRTMLAAHGAA 92
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BLAST of mRNA_D-mesarthrocarpus_Contig9461.1.1 vs. uniprot
Match: A0A6H5KD93_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD93_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 1.580e-8
Identity = 32/56 (57.14%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:    1 TLEHGQREVRSIVGSVLLTQLRTNYHNHLAQVQGEQYLFALVLHAIRTRIEGSGLA 168
            TL+ GQREVRSI+G ++L+QLR+ +H   AQVQ EQYLF LV+ A+RT +   G A
Sbjct:  272 TLDQGQREVRSILGGLVLSQLRSVWHTQTAQVQAEQYLFCLVVDAVRTMLAAHGAA 327
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BLAST of mRNA_D-mesarthrocarpus_Contig9461.1.1 vs. uniprot
Match: A0A835YPU0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPU0_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 6.520e-8
Identity = 32/53 (60.38%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    1 TLEHGQREVRSIVGSVLLTQLRTNYHNHLAQVQGEQYLFALVLHAIRTRIEGS 159
            TLEHGQRE+RSIVGS+LL+QLR  +  H A+ Q EQYLF L + AIRT +  +
Sbjct:  287 TLEHGQRELRSIVGSMLLSQLRAAWTAHNARAQAEQYLFGLAVDAIRTALRSA 339
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9461.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FSF5_ECTSI1.170e-2652.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JR47_9PHAE3.580e-946.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7TQZ3_9STRA5.060e-964.00Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A4D9CZ38_9STRA5.500e-964.00Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
D7FQ14_ECTSI8.950e-957.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KD93_9PHAE1.580e-857.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YPU0_9STRA6.520e-860.38Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9461contigD-mesarthrocarpus_Contig9461:1..1414 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1038
Hectar predicted targeting categoryother localisation
Exons2
Cds size1038
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791100.0707664-CDS-D-mesarthrocarpus_Contig9461:0..931680791100.0707664-CDS-D-mesarthrocarpus_Contig9461:0..93Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9461 1..93 +
1680791100.0808508-CDS-D-mesarthrocarpus_Contig9461:469..14141680791100.0808508-CDS-D-mesarthrocarpus_Contig9461:469..1414Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9461 470..1414 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9461.1.1prot_D-mesarthrocarpus_Contig9461.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9461 1..1414 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9461.1.1

>prot_D-mesarthrocarpus_Contig9461.1.1 ID=prot_D-mesarthrocarpus_Contig9461.1.1|Name=mRNA_D-mesarthrocarpus_Contig9461.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=346bp
TLEHGQREVRSIVGSVLLTQLRTNYHNHLAQVQGEQYLFALVLHAIRTRI
EGSGLARAVPGGPRGHGGHGGRGGGHGSCSELNDLIAFDSWVPGIGPACP
GCGRGTDSSCPLCGGTGVSLSELGLLVNDDEKKSSSKTKSKKKRERKARA
KAAKKEQDGAGAGQAAGGGPGLARGRRRGGECSSGRDSSSQGSSGSGGGA
ARNQRGKQGQGQRDGSGVGDMGGSGERRYVAGDNMDMPSREHSGPGKRRG
STGAAAGGVGMVGKGLGIGSSAGSLLSMLGGGAEGDTGGFGDDEGIDEGI
DEDLVREMERLRRLKARADVQRSRAALRSNLRKNFDQLLSRPTSS*
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mRNA from alignment at D-mesarthrocarpus_Contig9461:1..1414+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9461.1.1 ID=mRNA_D-mesarthrocarpus_Contig9461.1.1|Name=mRNA_D-mesarthrocarpus_Contig9461.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1414bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9461:1..1414+ (Discosporangium mesarthrocarpum MT17_79)
ACGCTGGAGCATGGCCAGAGAGAGGTCCGCTCGATCGTGGGGTCGGTGCT
TCTCACACAGCTGCGAACCAACTACCACAACCACCTTGCCCAGGTGAGCT
CCTCAGTTAATCCCCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCC
CAACCCCTTCCACAGCGGACTCAAGTTGTCTAGCAGCATTAACTTTTACC
ACTACCTAAGCACTCGGTACATGTTAACATACTACCACTTCTGTTGAGGA
TCTTGGTTGCTTGCGTAAGAGTTAAGTTTTTGCATGTGTGCTCGAGGGTG
CTGTGCCGCCCCTCAGCGCTGTCCATCTCCGCGTCTGGTTAGGCAGAAGG
GAGCCGTCCCTCCTCCGGCCACGCACACGGCAAAATGTTCAACAGGACCG
GGTGTCCTCGCTATCACCACACCCACTGCCCCTTTGCCCGTGCCATTTCC
CCCCCCCCTCTCGGTGCAGGTGCAGGGGGAACAGTACCTTTTTGCCCTGG
TGCTCCACGCCATCCGCACGCGAATAGAGGGCTCTGGACTGGCTCGGGCA
GTGCCCGGGGGGCCCAGGGGCCATGGAGGCCATGGGGGCCGCGGCGGGGG
GCATGGCAGCTGCAGTGAGCTCAATGACCTGATTGCTTTCGACTCCTGGG
TCCCGGGCATTGGCCCAGCCTGCCCTGGGTGTGGGCGGGGCACAGACTCG
AGCTGCCCTCTCTGCGGGGGAACAGGGGTTTCGCTCTCGGAGCTGGGGCT
CCTGGTGAACGATGACGAGAAGAAGTCCAGCAGCAAGACCAAGTCCAAGA
AGAAGCGCGAGCGCAAGGCTCGGGCCAAGGCGGCCAAGAAGGAGCAGGAC
GGGGCCGGGGCTGGGCAGGCGGCAGGCGGAGGACCGGGGTTGGCACGTGG
GAGGAGGCGGGGAGGGGAATGCAGTAGCGGGCGTGACAGCAGTAGCCAGG
GGTCTTCTGGGAGTGGCGGTGGTGCTGCACGGAACCAAAGGGGTAAGCAG
GGGCAGGGTCAGAGGGATGGCAGCGGGGTGGGTGACATGGGAGGCAGTGG
AGAGAGAAGGTATGTTGCCGGTGATAATATGGATATGCCATCACGGGAGC
ATTCGGGCCCAGGGAAACGGCGGGGTTCAACAGGGGCAGCGGCCGGGGGA
GTCGGCATGGTCGGGAAGGGGTTGGGCATTGGGTCATCGGCAGGAAGCCT
GCTGTCAATGCTGGGCGGCGGGGCTGAGGGAGACACAGGGGGGTTCGGGG
ACGATGAGGGCATTGATGAGGGTATCGATGAAGACCTGGTGCGGGAGATG
GAGCGTCTACGGCGCCTCAAGGCACGAGCAGACGTCCAGCGGAGCCGTGC
CGCCCTCCGCTCCAACCTCCGGAAGAACTTCGACCAGCTCCTCTCTCGTC
CAACTTCATCGTGA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9461:1..1414+

>mRNA_D-mesarthrocarpus_Contig9461.1.1 ID=mRNA_D-mesarthrocarpus_Contig9461.1.1|Name=mRNA_D-mesarthrocarpus_Contig9461.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=1038bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9461:1..1414+ (Discosporangium mesarthrocarpum MT17_79)
ACGCTGGAGCATGGCCAGAGAGAGGTCCGCTCGATCGTGGGGTCGGTGCT
TCTCACACAGCTGCGAACCAACTACCACAACCACCTTGCCCAGGTGCAGG
GGGAACAGTACCTTTTTGCCCTGGTGCTCCACGCCATCCGCACGCGAATA
GAGGGCTCTGGACTGGCTCGGGCAGTGCCCGGGGGGCCCAGGGGCCATGG
AGGCCATGGGGGCCGCGGCGGGGGGCATGGCAGCTGCAGTGAGCTCAATG
ACCTGATTGCTTTCGACTCCTGGGTCCCGGGCATTGGCCCAGCCTGCCCT
GGGTGTGGGCGGGGCACAGACTCGAGCTGCCCTCTCTGCGGGGGAACAGG
GGTTTCGCTCTCGGAGCTGGGGCTCCTGGTGAACGATGACGAGAAGAAGT
CCAGCAGCAAGACCAAGTCCAAGAAGAAGCGCGAGCGCAAGGCTCGGGCC
AAGGCGGCCAAGAAGGAGCAGGACGGGGCCGGGGCTGGGCAGGCGGCAGG
CGGAGGACCGGGGTTGGCACGTGGGAGGAGGCGGGGAGGGGAATGCAGTA
GCGGGCGTGACAGCAGTAGCCAGGGGTCTTCTGGGAGTGGCGGTGGTGCT
GCACGGAACCAAAGGGGTAAGCAGGGGCAGGGTCAGAGGGATGGCAGCGG
GGTGGGTGACATGGGAGGCAGTGGAGAGAGAAGGTATGTTGCCGGTGATA
ATATGGATATGCCATCACGGGAGCATTCGGGCCCAGGGAAACGGCGGGGT
TCAACAGGGGCAGCGGCCGGGGGAGTCGGCATGGTCGGGAAGGGGTTGGG
CATTGGGTCATCGGCAGGAAGCCTGCTGTCAATGCTGGGCGGCGGGGCTG
AGGGAGACACAGGGGGGTTCGGGGACGATGAGGGCATTGATGAGGGTATC
GATGAAGACCTGGTGCGGGAGATGGAGCGTCTACGGCGCCTCAAGGCACG
AGCAGACGTCCAGCGGAGCCGTGCCGCCCTCCGCTCCAACCTCCGGAAGA
ACTTCGACCAGCTCCTCTCTCGTCCAACTTCATCGTGA
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