mRNA_D-mesarthrocarpus_Contig9447.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9447.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig9447.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig9447.1.1 vs. uniprot
Match: A0A6H5KYY0_9PHAE (Response regulatory domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYY0_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 9.770e-32
Identity = 68/148 (45.95%), Postives = 88/148 (59.46%), Query Frame = 1 
Query:    1 QVHLDMAVVPEVNKRVLTHPLWLGQMTRACLIHSLNPMDEGRIVLRVSYQRPGWLRVGVEANWVAMQKCKGDGXXXXXXXXXXXXXXXXXRRGEGGWGVDCNGWSVWWVRSAALALGGEAGWSPSLDHSGARTLWFTVPAENIPEEDE 444
            +V LD+ V   V+K V  + LWL QMTRACLIH+L+P ++  ++LRVSY RPG +RVG+EA W       G G                  R   GW  D    +VWWVR+AALALGGEA +  S D  G   LWFT+PAEN+P++D+
Sbjct:  236 KVQLDLRVAANVDKSVKIYRLWLSQMTRACLIHALHPDEDDSVILRVSYARPGLMRVGIEAVWRVAGSRTGSGGSWGDGTSADHREAP---RVLSGWDRDMPA-AVWWVRAAALALGGEADYDRSRDREGFHELWFTIPAENVPDDDD 379
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BLAST of mRNA_D-mesarthrocarpus_Contig9447.1.1 vs. uniprot
Match: D7FY83_ECTSI (Response regulatory domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY83_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 1.770e-31
Identity = 73/148 (49.32%), Postives = 95/148 (64.19%), Query Frame = 1 
Query:    1 QVHLDMAVVPEVNKRVLTHPLWLGQMTRACLIHSLNPMDEGRIVLRVSYQRPGWLRVGVEANWVAMQKCKGDGXXXXXXXXXXXXXXXXXRRGEGGWGVDCNGWSVWWVRSAALALGGEAGWSPSLDHSGARTLWFTVPAENIPEEDE 444
            +V LD+ V  +V+K V T+ LWL QMTRACLIH+L+P ++  ++LRVSY RPG +RVG+EA W      +G  XXXXXX            R   GW  D    + WWVR+AALALGGEA +  S D  G   LWFT+PAEN+P++D+
Sbjct:  117 KVQLDLRVAADVDKSVKTYRLWLSQMTRACLIHALHPDEDDSVILRVSYARPGLMRVGIEAVWRVAGSREGGXXXXXXXTSADQREAP---RVLSGWDRDMPA-AAWWVRAAALALGGEADYDRSRDREGFHELWFTIPAENVPDDDD 260
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9447.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KYY0_9PHAE9.770e-3245.95Response regulatory domain-containing protein n=1 ... [more]
D7FY83_ECTSI1.770e-3149.32Response regulatory domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9447contigD-mesarthrocarpus_Contig9447:1674..3716 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size444
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionMembrane-localised response receiver domain protein
Ec32 orthologEc-24_003450.1
Cds size429
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791098.7459524-UTR-D-mesarthrocarpus_Contig9447:1673..16881680791098.7459524-UTR-D-mesarthrocarpus_Contig9447:1673..1688Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9447 1674..1688 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791098.7582078-CDS-D-mesarthrocarpus_Contig9447:1688..17481680791098.7582078-CDS-D-mesarthrocarpus_Contig9447:1688..1748Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9447 1689..1748 +
1680791098.772365-CDS-D-mesarthrocarpus_Contig9447:2648..28881680791098.772365-CDS-D-mesarthrocarpus_Contig9447:2648..2888Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9447 2649..2888 +
1680791098.78769-CDS-D-mesarthrocarpus_Contig9447:3587..37161680791098.78769-CDS-D-mesarthrocarpus_Contig9447:3587..3716Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9447 3588..3716 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9447.1.1prot_D-mesarthrocarpus_Contig9447.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9447 1689..3716 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9447.1.1

>prot_D-mesarthrocarpus_Contig9447.1.1 ID=prot_D-mesarthrocarpus_Contig9447.1.1|Name=mRNA_D-mesarthrocarpus_Contig9447.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=143bp
MAVVPEVNKRVLTHPLWLGQMTRACLIHSLNPMDEGRIVLRVSYQRPGWL
RVGVEANWVAMQKCKGDGPGAGTGAGVLGKGEGEGRRGEGGWGVDCNGWS
VWWVRSAALALGGEAGWSPSLDHSGARTLWFTVPAENIPEEDE
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mRNA from alignment at D-mesarthrocarpus_Contig9447:1674..3716+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9447.1.1 ID=mRNA_D-mesarthrocarpus_Contig9447.1.1|Name=mRNA_D-mesarthrocarpus_Contig9447.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2043bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9447:1674..3716+ (Discosporangium mesarthrocarpum MT17_79)
CAGGTTCACCTTGATATGGCGGTGGTGCCAGAAGTGAACAAGAGAGTGCT
CACTCACCCCCTCTGGCTTGGACAGGTACAGTGCACTCAATGGGGTCCAA
ACACTAACCCTTACCCCAACCCTAACATCCAGAAGGCTTTCTACCAAACG
GTTTCTCAACCCTAACCCTAACCCTAACCCTAACCCTAACCCCCTTTCCT
CACCTCGGTTTGTCTCAGCCAACCTTGTCCATGCCATGACATCATAATCC
TCCTGTATTGTGTGCCGCTCTCCCCTCGACCAGCCCAGGGAGATGGAGCT
TTATCTAGGGCTCTCAATATCTCAACCCCAAATCCCCTTCCCCCCCCCAC
CTCTCCCGCCACCTCAACTCTTCAACCCTAGAGCAGTGAAGAAGAGGCAA
GTTGTTAAAGAAAGTTTTCTCGTCCCAACAGCCAATGATATCGCACTGTA
TGAGGGAGGAAAGTCGACTGTGTTGGTGTGAATGCACGTGCTTTACCTAG
CAACTCCTGCATTCAGTAATATGAGGTTATGGTTAGGGTTAGGGTTAGGG
TTAGGGTTATGGTTAGGGTTAGGGTATCAACAGTGAAAACTACTGCTGAA
CGGAGGAAGCCCTTCATGCATAGAAGTCGAAGTATTGAATAGGGCTTTCA
ACCACAGAGTGACGGGAACAGAAGCCCCTTGTTGTCCACATGCCCTAACC
CCAACCCCAACCCTAACCCTAACCATACCCCTGACCCTAACACTGAAGCT
AAGATAAAAACTCCAAACCTTGCCCCTCGCCTAACCACCCCCCACCTAAC
CCTACCCCTAACCCTAACCTCCAAACCATGTCTCTCTATCGTCCTCCTCC
ACCTCCTCCTCCATCCTCCTCCTCCTTTTCTGCTTCTCCCTGCCCCAGGC
CAACTAACCCAACCTAAACCCTGATGCTTAAACCCCCCCCATCCCCCCCC
CTCTCCCCGCCACTCCCTTCCCCAGATGACCCGGGCATGCCTGATTCACT
CTCTCAACCCCATGGATGAAGGGCGCATTGTCCTGCGTGTATCTTACCAA
CGCCCGGGCTGGCTGAGGGTGGGGGTGGAAGCCAACTGGGTGGCGATGCA
AAAGTGCAAGGGAGACGGGCCTGGTGCTGGGACTGGGGCCGGAGTATTGG
GGAAGGGGGAGGGGGAGGGGCGACGGGGGGAGGGAGGCTGGGGAGTAGAC
TGCAATGGCTGGTCTGTGGGTTGGGACAGGGATACACCCCCTGTGAGTGG
TGGCAGTGGTGGTGGTTTGGTGTGCCTGTGGTCTTAACATGCTGTCCTGG
GAAGGGCTTTAGGGTTGGGGTTAGGGCTAGGGTTACGGCTAGGGTTGGGG
CTAGGGTTGGGGTTATGGGGAGGGTTGGGGTTAGGGATAGGTTAGTGTTA
GTGTTTGTCGTTTCTGCTGAGGGTTGGGGTGTGTGCATGCAGCATGTCCA
AGTGTCTACTTCAAGCAAGGCTTAGAAACACAGGACACTCAGCATAGCCC
TCACCCTAGCCCTCACCATAACCCTAACCCCAACACACTAACCCTAACAC
CCCCTGCTCTCTCTCTCACATAGACGGCAAGACCACTGGGATTGGGATTA
GGGTCAGGGTTAGGGTCAGCGTTACGTACAGCCAGGGTCATGGTTTTTTC
TGTGTAGTCGAATTATGCCCCATCACGACCAATCACGTACTTCTTGCTCT
TTAAGAAAAGAAAAAGAGGTGAGATGTTTTTCTTTCAATCAGCCAACATC
CACAAGCACCCACAGACAGCTCTCGAGGCCTGTAGACTAGCCGGCGTCAA
ACCAGAAGCACAGCGACGCACAAATGTACCCTTCAAGGTATCCTTTCCTC
GTTCCCCCATTTCCATAACCCTAACCCTATCCCCGTGATACACCCCCCAC
CCGCAAAACAGGAGGTCTGGTGGGTGCGATCAGCTGCTCTTGCTCTGGGC
GGTGAAGCTGGCTGGAGCCCATCCCTTGATCACTCTGGGGCACGCACACT
GTGGTTCACTGTCCCCGCTGAGAATATTCCGGAAGAAGATGAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9447:1674..3716+

>mRNA_D-mesarthrocarpus_Contig9447.1.1 ID=mRNA_D-mesarthrocarpus_Contig9447.1.1|Name=mRNA_D-mesarthrocarpus_Contig9447.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=429bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9447:1674..3716+ (Discosporangium mesarthrocarpum MT17_79)
ATGGCGGTGGTGCCAGAAGTGAACAAGAGAGTGCTCACTCACCCCCTCTG
GCTTGGACAGATGACCCGGGCATGCCTGATTCACTCTCTCAACCCCATGG
ATGAAGGGCGCATTGTCCTGCGTGTATCTTACCAACGCCCGGGCTGGCTG
AGGGTGGGGGTGGAAGCCAACTGGGTGGCGATGCAAAAGTGCAAGGGAGA
CGGGCCTGGTGCTGGGACTGGGGCCGGAGTATTGGGGAAGGGGGAGGGGG
AGGGGCGACGGGGGGAGGGAGGCTGGGGAGTAGACTGCAATGGCTGGTCT
GTCTGGTGGGTGCGATCAGCTGCTCTTGCTCTGGGCGGTGAAGCTGGCTG
GAGCCCATCCCTTGATCACTCTGGGGCACGCACACTGTGGTTCACTGTCC
CCGCTGAGAATATTCCGGAAGAAGATGAG
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