mRNA_D-mesarthrocarpus_Contig10184.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10184.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10184.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10184.1.1 vs. uniprot
Match: A0A0J7NHJ8_LASNI (Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7NHJ8_LASNI)

HSP 1 Score: 53.5 bits (127), Expect = 3.170e-6
Identity = 26/70 (37.14%), Postives = 41/70 (58.57%), Query Frame = 1 
Query:   61 VATGPDELSTRREASAGEDADKWQEAMDMEMEGQWDKGTFSDDCTPPGRKPVKTRFVYKIKRTADRAIEQ 270
            +  GPD+  T +EA   E  D WQ+AM  E +   +  T+     PPGRKP+K ++V+K KR ++  +E+
Sbjct:  781 MVIGPDDPITLQEALESEACDSWQQAMRNEYDALLENKTWDLVDLPPGRKPLKCKWVFKTKRDSNNDVER 850
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BLAST of mRNA_D-mesarthrocarpus_Contig10184.1.1 vs. uniprot
Match: A0A0J7KH47_LASNI (Integrase core domain protein (Fragment) n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KH47_LASNI)

HSP 1 Score: 50.4 bits (119), Expect = 3.630e-5
Identity = 24/62 (38.71%), Postives = 38/62 (61.29%), Query Frame = 1 
Query:   79 ELSTRREASAGEDADKWQEAMDMEMEGQWDKGTFSDDCTPPGRKPVKTRFVYKIKRTADRAI 264
            E  T  EA    +ADKW+ A++ E+E   + GT+     PPG+KP+ T++V+K+K T   A+
Sbjct:  181 EPVTFAEAMRSSEADKWKCAIEEELEAHENNGTWKIVPFPPGKKPIDTKWVFKLKNTVGGAV 242
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10184.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0J7NHJ8_LASNI3.170e-637.14Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=677... [more]
A0A0J7KH47_LASNI3.630e-538.71Integrase core domain protein (Fragment) n=1 Tax=L... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10184contigD-mesarthrocarpus_Contig10184:4197..4466 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog120017.I2FNF2
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve
Model size270
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.55e-05
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3UY7N@5204|Basidiomycota
DescriptionEncoded by
Cds size270
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789161.5608053-CDS-D-mesarthrocarpus_Contig10184:4196..44661680789161.5608053-CDS-D-mesarthrocarpus_Contig10184:4196..4466Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10184 4197..4466 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10184.1.1prot_D-mesarthrocarpus_Contig10184.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10184 4197..4466 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10184.1.1

>prot_D-mesarthrocarpus_Contig10184.1.1 ID=prot_D-mesarthrocarpus_Contig10184.1.1|Name=mRNA_D-mesarthrocarpus_Contig10184.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=90bp
QQPRLRTSHDAFCILGLVGEVATGPDELSTRREASAGEDADKWQEAMDME
MEGQWDKGTFSDDCTPPGRKPVKTRFVYKIKRTADRAIEQ
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mRNA from alignment at D-mesarthrocarpus_Contig10184:4197..4466+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10184.1.1 ID=mRNA_D-mesarthrocarpus_Contig10184.1.1|Name=mRNA_D-mesarthrocarpus_Contig10184.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=270bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10184:4197..4466+ (Discosporangium mesarthrocarpum MT17_79)
CAGCAACCTCGTCTGCGCACTTCTCATGACGCGTTCTGCATACTAGGACT
GGTGGGTGAGGTAGCGACAGGCCCGGACGAACTATCAACGAGGAGAGAGG
CGTCGGCCGGAGAGGATGCGGACAAGTGGCAGGAGGCTATGGATATGGAG
ATGGAAGGCCAGTGGGACAAAGGCACCTTCAGCGACGACTGCACTCCTCC
AGGCCGCAAGCCGGTTAAGACACGGTTTGTGTATAAGATTAAGCGCACGG
CTGACAGGGCCATAGAGCAA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10184:4197..4466+

>mRNA_D-mesarthrocarpus_Contig10184.1.1 ID=mRNA_D-mesarthrocarpus_Contig10184.1.1|Name=mRNA_D-mesarthrocarpus_Contig10184.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=270bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10184:4197..4466+ (Discosporangium mesarthrocarpum MT17_79)
CAGCAACCTCGTCTGCGCACTTCTCATGACGCGTTCTGCATACTAGGACT
GGTGGGTGAGGTAGCGACAGGCCCGGACGAACTATCAACGAGGAGAGAGG
CGTCGGCCGGAGAGGATGCGGACAAGTGGCAGGAGGCTATGGATATGGAG
ATGGAAGGCCAGTGGGACAAAGGCACCTTCAGCGACGACTGCACTCCTCC
AGGCCGCAAGCCGGTTAAGACACGGTTTGTGTATAAGATTAAGCGCACGG
CTGACAGGGCCATAGAGCAA
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