mRNA_D-mesarthrocarpus_Contig1018.8.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig1018.8.1
Unique NamemRNA_D-mesarthrocarpus_Contig1018.8.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1018.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig1018contigD-mesarthrocarpus_Contig1018:14191..14728 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size540
Hectar predicted targeting categoryother localisation
Exons1
Cds size348
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789161.1747682-UTR-D-mesarthrocarpus_Contig1018:14190..143801680789161.1747682-UTR-D-mesarthrocarpus_Contig1018:14190..14380Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig1018 14191..14380 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789161.187232-CDS-D-mesarthrocarpus_Contig1018:14380..147281680789161.187232-CDS-D-mesarthrocarpus_Contig1018:14380..14728Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1018 14381..14728 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig1018.8.1prot_D-mesarthrocarpus_Contig1018.8.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig1018 14381..14728 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig1018.8.1

>prot_D-mesarthrocarpus_Contig1018.8.1 ID=prot_D-mesarthrocarpus_Contig1018.8.1|Name=mRNA_D-mesarthrocarpus_Contig1018.8.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=116bp
MGWGGTWHIPLYPYPSKNTSFLPCAADCCASHPCIAYPHVIAAGCCCCLP
SLLHFLFRHLPDGPSKCASLSLKEHALPWCHVGRIVRVCFFFFFTKCVPS
ITWCHAHDNLAPNPNP
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mRNA from alignment at D-mesarthrocarpus_Contig1018:14191..14728+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig1018.8.1 ID=mRNA_D-mesarthrocarpus_Contig1018.8.1|Name=mRNA_D-mesarthrocarpus_Contig1018.8.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=538bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1018:14191..14728+ (Discosporangium mesarthrocarpum MT17_79)
CAAGTAGCCGGCCGTCAGGTTGGGATTAGGGAACAAGAACCTAAGGACCT
AAAGACGTACTGGACTGGACTGGAAAGTTGTTTTTCTTTTCTCTCTCTCT
TTCTCTCGCTTGCCCCTCATTGGCTAGACCCTCTTGAGATGGTCAACGCA
GAATGTGAGAGTTCTTTGTGCGTTCAATGGTGTGGCAGGCATGGGTTGGG
GCGGGACATGGCATATACCCCTATACCCCTATCCCTCCAAAAACACATCA
TTCCTCCCATGTGCTGCTGATTGCTGCGCCTCCCATCCTTGCATCGCTTA
TCCTCATGTCATTGCCGCTGGCTGTTGCTGTTGCCTTCCTTCCCTACTCC
ACTTTCTTTTCCGGCACTTACCTGATGGACCGAGCAAGTGCGCCTCCTTA
TCCCTGAAAGAGCATGCCTTGCCCTGGTGCCATGTGGGCAGGATCGTGCG
AGTGTGTTTTTTTTTCTTTTTTACGAAGTGTGTCCCAAGCATAACCTGGT
GCCATGCACACGACAACCTGGCCCCAAACCCAAACCCA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1018:14191..14728+

>mRNA_D-mesarthrocarpus_Contig1018.8.1 ID=mRNA_D-mesarthrocarpus_Contig1018.8.1|Name=mRNA_D-mesarthrocarpus_Contig1018.8.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=348bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1018:14191..14728+ (Discosporangium mesarthrocarpum MT17_79)
ATGGGTTGGGGCGGGACATGGCATATACCCCTATACCCCTATCCCTCCAA
AAACACATCATTCCTCCCATGTGCTGCTGATTGCTGCGCCTCCCATCCTT
GCATCGCTTATCCTCATGTCATTGCCGCTGGCTGTTGCTGTTGCCTTCCT
TCCCTACTCCACTTTCTTTTCCGGCACTTACCTGATGGACCGAGCAAGTG
CGCCTCCTTATCCCTGAAAGAGCATGCCTTGCCCTGGTGCCATGTGGGCA
GGATCGTGCGAGTGTGTTTTTTTTTCTTTTTTACGAAGTGTGTCCCAAGC
ATAACCTGGTGCCATGCACACGACAACCTGGCCCCAAACCCAAACCCA
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