mRNA_D-mesarthrocarpus_Contig1018.13.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig1018.13.1
Unique NamemRNA_D-mesarthrocarpus_Contig1018.13.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1018.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig1018contigD-mesarthrocarpus_Contig1018:21740..24329 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LNT6
PFAMsTB2_DP1_HVA22
Model size569
Max annot lvl2759|Eukaryota
KEGG koko:K17279
Hectar predicted targeting categoryother localisation
Exons3
Evalue8.89e-07
EggNOG OGsCOG5052@1|root,KOG1726@2759|Eukaryota
Descriptionmitotic nuclear envelope reassembly
Cds size567
COG categoryU
BRITEko00000,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789161.1193452-CDS-D-mesarthrocarpus_Contig1018:21740..220351680789161.1193452-CDS-D-mesarthrocarpus_Contig1018:21740..22035Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1018 21741..22035 -
1680789161.1306252-CDS-D-mesarthrocarpus_Contig1018:22903..229981680789161.1306252-CDS-D-mesarthrocarpus_Contig1018:22903..22998Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1018 22904..22998 -
1680789161.1386843-CDS-D-mesarthrocarpus_Contig1018:24152..243291680789161.1386843-CDS-D-mesarthrocarpus_Contig1018:24152..24329Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1018 24153..24329 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig1018.13.1prot_D-mesarthrocarpus_Contig1018.13.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig1018 21741..24329 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig1018.13.1

>prot_D-mesarthrocarpus_Contig1018.13.1 ID=prot_D-mesarthrocarpus_Contig1018.13.1|Name=mRNA_D-mesarthrocarpus_Contig1018.13.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=189bp
QGATWIYGRVLHPWLVHYEEEIDGKLAGVKDHAVRTMKGLGASAVSEITR
VVAQQGALAKDQVVPQVVSTMFGTKVKASGGGRDRDRENDSALPSAASTT
TTAMTTMKGPSGLGLGLGLGLGSGFGFGLGLGGESPPGPSWGWSGEDNAV
ESERELQQGVLGGAGGLGPGPGPGPGVEDEEGEGEMMIE
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mRNA from alignment at D-mesarthrocarpus_Contig1018:21740..24329-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig1018.13.1 ID=mRNA_D-mesarthrocarpus_Contig1018.13.1|Name=mRNA_D-mesarthrocarpus_Contig1018.13.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2590bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1018:21740..24329- (Discosporangium mesarthrocarpum MT17_79)
CAGGGGGCAACCTGGATCTATGGGAGGGTCCTGCACCCATGGCTTGTCCA
CTATGAAGAGGAGATCGATGGGAAGCTAGCTGGGGTGAAGGACCATGCCG
TGAGGACCATGAAGGGCCTGGGGGCCTCTGCGGTCAGTGAGATCACACGG
GTCGTGGCGCAGCAGGGGGCCTTGGCGGTGAGATAAATGATGTGCTGTAT
GTGTGTGTATGTACGGAGCCACATTTTTTTTGTTGTTGTTGGTGTTTTGT
AGTTTGTATTTCTGAGAGTGGTTGGTTAGAGTTAGAGCAGAAAAGTTTAA
GTATATGTGTTTAAGAGGGTCAGGGTTAGGGTTGGGGGCCGAGGTAAGGG
GTGGCGAAAGGGTTAGGGTCAAGGTACAGAGTAGGGTAAGTGTTAGGGTC
AAGATAAGGAGTAGGGTAAGTGTTAGCGTCACTACACACGGATACGGGGA
TACAAACATGTCTGTGCCTTGCCTTGCCTTGCCATTTCCTTCCATTTTTC
ATGCTTTGTTTTGCTCCCTTTTCTTGTTCACTACTTGCTCTTGAGTTGTT
TTCTTTCTTCCCCCTCTCGCTGCCCATCAGGGGGAGGGAGAACCCCTGTC
ATAAGGTCTCATATCATACGTAAGCCTGGCCCCTATGTGACCAAAAATAC
CTGGGGATGGGTCTATTCCTTAAAGTAATGTTGATTTGCTCAAGTTTCTT
CTGGCTACTGAGTCATATGTGCACTGTGTGTACTACTCAGGGTTAGGGTT
AGGGTTAGGGTTAGGGTTAGGGAGGAGACATGAATATGTTTTGTTCTTTT
TTTGGTAGAGTTGACCCCACCCCAACCCTCTAACTTTAAGGCTCCTGAGA
GGGGAACTTGCATTTTCCCCTTTTTTTCTTTTTTCTTTTCTGGCTCTTAA
GCCTGCTCCCCTTCCCTTGTCTCCCCCCCCACCTTTTTTGTATTTTCTCT
CACTTTGGTGTAATTTATTGTAACTATTTTTCTTTCACACGCTTGCATGG
CTTCCTTCTCTGTTTGATAGGCGCAAAATGGATTCTTCTCAGCACCTTCT
GGTACTTGGGTCCTTGACTTGCTCCCTAACCCCATAACCCTGTAATCCTA
TCCCTTGTTACTGCTAATATTTGCAAATACTACGGATATGGATATGGATA
TGGATATGGATGTGGGTACTGGTACGCTCACTGGACGTTTTTTGGCCTTC
CTTGGCATGGTGGGTGATTCATATTTTGTTGTCTTGTGTCTTGTGTCTTC
TATTTTTTTATGTCTTATGTCTTGTATTTTATGTCTTATGGGGGCATATT
CGGGGGGGGTTTCATGGCTCACAACATGTAGAAGGACCAGGTAGTTCCAC
AGGTGGTGTCAACGATGTTTGGGACCAAGGTCAAGGCCAGTGGTGGCGGC
AGAGACAGGGACAGGGAGAATGACAGGTGACCATGAGGCATCGCCAATGA
TATCATAGTATTACAAAGTACTAATTGACTCTCAGTTTACTTGTAATGTG
GCAGTGAAGAAAGGAACTGGGTTTTTTTACCTGAGAAGAAAGAAGAGGAC
AACCATCGGGAGGGGTCAGCATAGTGCATAGTGCATGGGACATGGTGCCA
ATCACCATCAGATTCATCAACGGTACTTGAGGCCATGACGATTGGGTTAG
GATTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTACGTCGCAATGGTTGA
ACTCTAATCTGTTGTACCTTATGGATCAATAAGTGCATGCCGCACAGCAG
AAGACTGTCTCCGTGCTGTACCTGTAGTGTGATTATCAATCCCATTAGTA
AATGCTAGCTTTGTGCCTGTGCTCTTGCCTAACCCTAACCCTAACCCTAG
CTGTGGCAGTTTCATTATTCGGTGAAGTGCTGTGTAGTGCTGGTAGAACA
GAGTAGACAGAATAGGGTAGGACAGGGTAGGGTTAGGGGTTGGGTTAGGG
GTTGGGTTAGGGTTAGGGTTAGGGTTAGTGCCCAGAGCCCGAGGGTGAGG
GTGTTTTCGTCCTCCCGCCTGTCAGTCCTAACCCTAGCCCTAACCCCAAC
CCCAACCCTAACCCCAATTTTAGTCATAGCCCTAACTCTCTAGCCCTAAC
CCTAACCATAGCTGTGGCCCTAACCCTTGCCCTAACCCTCACCATATTCG
TAACCCTAATCCTCTAGCCCTGACCCTAGCCCTAACCTGTAACCCCTAAC
CCCTGGATCCCAATCCCCAAATCCCAAAAATTCAACCCGAATCCTTTCCC
ATTCCTCTCATCATGCTGGGCTGGGGGGGGATGGGCTGTCGCAGTGCATT
ACCCTCGGCGGCCTCCACCACCACCACCGCCATGACAACGATGAAGGGGC
CTTCAGGGTTAGGGTTAGGGCTAGGGCTAGGGTTGGGATCAGGGTTCGGG
TTCGGGTTAGGGTTAGGGGGTGAATCCCCTCCTGGTCCCAGCTGGGGTTG
GTCTGGAGAGGACAATGCTGTTGAATCAGAGCGGGAGTTGCAGCAAGGGG
TCCTGGGAGGTGCTGGGGGGTTGGGCCCGGGGCCGGGGCCTGGGCCAGGG
GTTGAGGACGAGGAGGGGGAGGGGGAGATGATGATAGAGG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1018:21740..24329-

>mRNA_D-mesarthrocarpus_Contig1018.13.1 ID=mRNA_D-mesarthrocarpus_Contig1018.13.1|Name=mRNA_D-mesarthrocarpus_Contig1018.13.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=567bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1018:21740..24329- (Discosporangium mesarthrocarpum MT17_79)
CAGGGGGCAACCTGGATCTATGGGAGGGTCCTGCACCCATGGCTTGTCCA
CTATGAAGAGGAGATCGATGGGAAGCTAGCTGGGGTGAAGGACCATGCCG
TGAGGACCATGAAGGGCCTGGGGGCCTCTGCGGTCAGTGAGATCACACGG
GTCGTGGCGCAGCAGGGGGCCTTGGCGAAGGACCAGGTAGTTCCACAGGT
GGTGTCAACGATGTTTGGGACCAAGGTCAAGGCCAGTGGTGGCGGCAGAG
ACAGGGACAGGGAGAATGACAGTGCATTACCCTCGGCGGCCTCCACCACC
ACCACCGCCATGACAACGATGAAGGGGCCTTCAGGGTTAGGGTTAGGGCT
AGGGCTAGGGTTGGGATCAGGGTTCGGGTTCGGGTTAGGGTTAGGGGGTG
AATCCCCTCCTGGTCCCAGCTGGGGTTGGTCTGGAGAGGACAATGCTGTT
GAATCAGAGCGGGAGTTGCAGCAAGGGGTCCTGGGAGGTGCTGGGGGGTT
GGGCCCGGGGCCGGGGCCTGGGCCAGGGGTTGAGGACGAGGAGGGGGAGG
GGGAGATGATGATAGAG
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