mRNA_D-mesarthrocarpus_Contig1018.12.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig1018.12.1
Unique NamemRNA_D-mesarthrocarpus_Contig1018.12.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1018.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig1018contigD-mesarthrocarpus_Contig1018:20803..21714 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size228
Hectar predicted targeting categoryother localisation
Exons2
Cds size216
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789161.0611243-CDS-D-mesarthrocarpus_Contig1018:20802..209941680789161.0611243-CDS-D-mesarthrocarpus_Contig1018:20802..20994Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1018 20803..20994 -
1680789161.0730214-CDS-D-mesarthrocarpus_Contig1018:21680..217041680789161.0730214-CDS-D-mesarthrocarpus_Contig1018:21680..21704Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1018 21681..21704 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789161.0815618-UTR-D-mesarthrocarpus_Contig1018:21704..217141680789161.0815618-UTR-D-mesarthrocarpus_Contig1018:21704..21714Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig1018 21705..21714 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig1018.12.1prot_D-mesarthrocarpus_Contig1018.12.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig1018 20803..21704 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig1018.12.1

>prot_D-mesarthrocarpus_Contig1018.12.1 ID=prot_D-mesarthrocarpus_Contig1018.12.1|Name=mRNA_D-mesarthrocarpus_Contig1018.12.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=72bp
MARTASEENDGRLPILRQLRLLRGRRFILMDPAKPMGGCSSAGAVSRKTV
LGGAVRGGGARGGGDEEELVFE
back to top

mRNA from alignment at D-mesarthrocarpus_Contig1018:20803..21714-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig1018.12.1 ID=mRNA_D-mesarthrocarpus_Contig1018.12.1|Name=mRNA_D-mesarthrocarpus_Contig1018.12.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=912bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1018:20803..21714- (Discosporangium mesarthrocarpum MT17_79)
CCTGTTCGTTATGGCGAGGACGGCATCAGAGGAGGTGAGAGGGACAGGGC
ACTTGCTCTCAGGGTGAACAACAAACTCCCTCCTGCAGAGGCACTGATGC
ATGCCTATGCCTTGGCATGCCCCATGCTTACTCTACTTCATCCCCAACCC
CGGCGCTTCACCCTAACCCTAACCCTAACCGTGGCCTTTACCTTATTAAA
CCCTTGACCATGACCCTAAGGCAAAGATCGCACCCTGAGTGCGTGTAACT
GTAGTACAGTTCTAGAGAAAGAGTAACTGTGGTGCACTCACGGTGGAGGT
GTGACTTCATGGAGCAAGTGTAACAGTAATACAGTTTCAGAACAACTGTG
ATTGCAGTACAGTAACGGAGTGGTTGCATAGTTTTGATACGAGGGAGGTG
TGACGGTGGTGGTGTGATCCCTTCCAAGTGAAGTTTAAGGTCAGGCTCAG
GGTTTTGACCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAAC
CCTAACCCTGACCCTAACTCTAACCCCAGCCCTAACCCTAACCCTAACCC
TAACACTAACCATAACCCTGACCCTAACTCTAACCCCAGCTTTAACCCTA
ACTCTAACCCCAGCTTTAACCCTAACCCTAACCCCAACCCTAACCCCAAC
CCTAAAAACATGCCTTGCACCCTGCACTCCGCAACCGCCGCGCACCACCA
TGATGTGTAACTGCCAAAAGAATGACGGACGCCTGCCAATCCTCCGGCAA
CTCCGGCTCCTTCGGGGGAGGCGTTTCATTCTCATGGACCCTGCAAAGCC
CATGGGCGGTTGCAGCAGTGCAGGGGCTGTGTCAAGGAAAACAGTCTTGG
GGGGGGCTGTGCGGGGTGGTGGGGCCAGGGGTGGTGGGGATGAGGAGGAG
CTGGTTTTTGAG
back to top

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1018:20803..21714-

>mRNA_D-mesarthrocarpus_Contig1018.12.1 ID=mRNA_D-mesarthrocarpus_Contig1018.12.1|Name=mRNA_D-mesarthrocarpus_Contig1018.12.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=216bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1018:20803..21714- (Discosporangium mesarthrocarpum MT17_79)
ATGGCGAGGACGGCATCAGAGGAGAATGACGGACGCCTGCCAATCCTCCG
GCAACTCCGGCTCCTTCGGGGGAGGCGTTTCATTCTCATGGACCCTGCAA
AGCCCATGGGCGGTTGCAGCAGTGCAGGGGCTGTGTCAAGGAAAACAGTC
TTGGGGGGGGCTGTGCGGGGTGGTGGGGCCAGGGGTGGTGGGGATGAGGA
GGAGCTGGTTTTTGAG
back to top