mRNA_D-mesarthrocarpus_Contig10177.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10177.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10177.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10177.1.1 vs. uniprot
Match: A0A1Z5KPP7_FISSO (HECT-type E3 ubiquitin transferase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KPP7_FISSO)

HSP 1 Score: 99.8 bits (247), Expect = 1.050e-20
Identity = 69/173 (39.88%), Postives = 103/173 (59.54%), Query Frame = 1
Query:   94 ETSAELFLRVTSGAAQGRPVPRGRLFSLLSRARAAVAWAGGSEARVAAVRRRLMALMAMVYCHPSTEAITAFFGAQPELVQELVEVAKSKVDPG-----------LRGVVPLDVCILAVHCLAALMHAWNGRTDIGLV--TRHTNVFQELGITRGQYGGVLPSLVRQSVAELH 573
            +++AELF            VP+ R F+LLS  R A ++    ++R+ AV RRL AL+ M++ HPS +AIT +F AQPEL  E+V++ +  V              L+ V+P +V +LAV  LAAL+   +G T+  L   TR ++V  ELG+ +GQY GVLP+L+R S++ LH
Sbjct:  266 KSTAELFFSCPQ-------VPKERQFALLSDIRLAKSF-HCRDSRIKAVERRLRALIIMLHSHPSQDAITNYFSAQPELCAEVVDLIRPTVSGAHVAPHPTVENLLQNVIPYEVRLLAVEALAALVLRRDGLTNGALTGTTRLSSVLIELGVGKGQYLGVLPTLIRYSLSCLH 430          
BLAST of mRNA_D-mesarthrocarpus_Contig10177.1.1 vs. uniprot
Match: A0A1Z5JHS1_FISSO (HECT-type E3 ubiquitin transferase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JHS1_FISSO)

HSP 1 Score: 96.3 bits (238), Expect = 1.670e-19
Identity = 69/181 (38.12%), Postives = 102/181 (56.35%), Query Frame = 1
Query:   88 RRETSAELFLRVTSGAAQGRPVPRGRLFSLLSRARAAVAWAGGSEARVAAVRRRLMALMAMVYCHPSTEAITAFFGAQPELVQELVEVAKSKVDPG-----------LRGVVPLDVCILAVHCLAALMHAWNGRTDIGLV--TRHTNVFQELGITRGQYGGVLPSLVRQSVAELHALSARL 591
            R+ TS +    +     Q   VP+ R F+LLS  R A ++    ++R+ AV RRL AL+ M++ HPS +AIT +F AQPEL  E+V++ +  V              L+ V+P  V +LAV  L AL+   +G T+  L   TR ++V  ELG+ +GQY GVLP+L+R S++ LH     L
Sbjct:  260 RKVTSVKSTAELLFSCPQ---VPKERQFALLSDIRLAKSF-HCRDSRIKAVERRLRALIIMLHSHPSQDAITNYFSAQPELCAEVVDLIRPTVSGAHVAAHPTVENLLQNVIPYKVRLLAVEALTALVLRRDGLTNGALTGTTRLSSVLIELGVGKGQYLGVLPTLIRYSLSCLHTTDVPL 436          
BLAST of mRNA_D-mesarthrocarpus_Contig10177.1.1 vs. uniprot
Match: A0A7S4VU13_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VU13_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.910e-16
Identity = 68/204 (33.33%), Postives = 103/204 (50.49%), Query Frame = 1
Query:   94 ETSAELFLRVTSGAAQGRPVPRGRLFSLLSRARAAVAWAGGSEARVAAVRRRLMALMAMVYCHPSTEAITAFFGAQPELVQELVEVAKSKVDP-----------------GLRG-----------------VVPLDVCILAVHCLAALMHAWNGRTDIGL--VTRHTNVFQELGITRGQYGGVLPSLVRQSVAELHALSARLHG 597
            +++AELF      A     VP  + F+LL++ R A ++   +++RVAAV RRL AL+ +++ HPS + I+ +F AQPEL  ELV++ +  V                   G  G                 VVP     LA+  L AL+   +G    GL  V R  NV  ELG+ +GQY G+LP+L+R S+A L++  ++  G
Sbjct:  161 KSTAELFFNCIEKAGGWARVPWDKAFTLLAQLRLAKSF-HSNKSRVAAVERRLRALICVLHAHPSQDVISGYFQAQPELCAELVDLVRPTVSSASVSSAASLLSRKDFAIGDNGQDNDGRHAVIAAVADSSVVPYSARTLAIESLTALVARKDGANG-GLTNVARQANVLGELGVGKGQYLGLLPTLIRYSLASLNSFLSQGKG 362          
BLAST of mRNA_D-mesarthrocarpus_Contig10177.1.1 vs. uniprot
Match: A0A7S2VVZ5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2VVZ5_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 6.090e-16
Identity = 60/162 (37.04%), Postives = 91/162 (56.17%), Query Frame = 1
Query:   97 TSAELFLRVTSGAAQGRPVPRGRLFSLLSRARAAVAWAGGSEARVAAVRRRLMALMAMVYCHPSTEAITAFFGAQPELVQELVEVAKSKVDPGLRG-VVPLDVCI--LAVHCLAALMHAWN-GRTDIGLVTRHTNVFQELGITRGQYGGVLPSLVRQSVAEL 570
            T+A++F       A    VP  + FSLL+R R + ++     +R AAVR RL +L++ +Y HPS + +  +F AQP+L +E+V++ +S     +     P   CI  LA+  L AL+   + G   I  + RH NV  ELG+ +GQY G+LPSL+R  V  L
Sbjct:  179 TTADVFRMC----ADKYKVPHDKRFSLLARIRLSKSF-NTQSSRQAAVRTRLYSLLSALYVHPSMDVLAGYFQAQPDLCREIVDLIRSPPPSEVSSQTTPTPQCIRLLALDVLVALVSPRSEGGQGIPSLARHVNVMGELGVGKGQYMGLLPSLLRDCVTNL 335          
BLAST of mRNA_D-mesarthrocarpus_Contig10177.1.1 vs. uniprot
Match: A0A448ZD07_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZD07_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 4.170e-15
Identity = 60/188 (31.91%), Postives = 94/188 (50.00%), Query Frame = 1
Query:   97 TSAELFLRVTSGAAQGRPVPRGRLFSLLSRARAAVAWAGGSEARVAAVRRRLMALMAMVYCHPSTEAITAFFGAQPELVQELVEVAKSKVDPGLRG--------------------------VVPLDVCILAVHCLAALM-HAWNGRTDIGLVTRHTNVFQELGITRGQYGGVLPSLVRQSVAELHAL 579
            ++A+LF +    A     +P  RLF LL+  R   ++     +RVAA+ RRL AL+ +++ +PS E ++ +F AQPEL  ELV++ +  V  G                             +VP  +  LA+  L AL      G   +    RH+N+  ELG+ +GQY G+LP+L+R S+A L +L
Sbjct:  336 STADLFFQCLRQAGGVERIPADRLFPLLADIRLTRSF-HCQASRVAAIERRLRALITILHANPSQEVMSGYFQAQPELCVELVDLLRPTVSSGAVSASSAAPKSSKIPRQNRDHIVTLSNSPIVPYQIRELALQSLTALAARREGGNGSLTGFARHSNILTELGVGKGQYLGLLPTLIRYSLASLGSL 522          
BLAST of mRNA_D-mesarthrocarpus_Contig10177.1.1 vs. uniprot
Match: B7G082_PHATC (HECT-type E3 ubiquitin transferase (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G082_PHATC)

HSP 1 Score: 81.3 bits (199), Expect = 2.600e-14
Identity = 67/189 (35.45%), Postives = 95/189 (50.26%), Query Frame = 1
Query:   88 RRET--SAELFLRVTSGAAQGRPVPRGRLFSLLSRARAAVAWAGGSEARVAAVRRRLMALMAMVYCHPSTEAITAFFGAQPELVQELVEVAKSKVD----------------PGLRGV---------VPLDVCILAVHCLAALMHAWNGRTD-IGLVTRHTNVFQELGITRGQYGGVLPSLVRQSVAEL 570
            R+ET  +AEL+  V   A     +P  RLF LL+  R A ++     AR+ AV RRL AL  +++ HPS E +  +F AQPEL  E+V++ +  V                 P  R           VP  + +LAV  LAAL+   +G T  +    R + V  ELGI +G Y G+LP+L+R S+A L
Sbjct:  305 RKETKSTAELYYLVLERAGGMDKIPSDRLFPLLADIRLARSF-HSQAARIGAVERRLRALTTILHAHPSQEVMNGYFQAQPELCVEIVDLLRPTVSSANIAAASGRATETNSPLQRDAITCLSSCQPVPYTIRMLAVESLAALVARRDGSTGALSGSARLSTVLAELGIGKGYYLGLLPTLLRYSLASL 492          
BLAST of mRNA_D-mesarthrocarpus_Contig10177.1.1 vs. uniprot
Match: A0A7S2L793_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2L793_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.550e-13
Identity = 58/165 (35.15%), Postives = 85/165 (51.52%), Query Frame = 1
Query:  169 FSLLSRARAAVAWAGGSEARVAAVRRRLMALMAMVYCHPSTEAITAFFGAQPELVQELVEVAKSKV---------DPGLRGV-------------------VPLDVCILAVHCLAALMHAWNGRT-DIGLVTRHTNVFQELGITRGQYGGVLPSLVRQSVAELHA 576
            F+LLS  R + A+   S  RV+A++ RL AL+ ++Y   S E+ITA+F AQPEL  ELV++ +  V         D G+                      VP DV  LA+  L AL+   +       +  R  NV  ELG+ +GQY G+LP+L+R S+A L++
Sbjct:  135 FTLLSTIRLSKAFYQNSNTRVSAIKLRLRALVTILYTLSSVESITAYFMAQPELCGELVDLVRPTVSSSGAATSSDGGVSXXXXXESESSNPILALADSPQVPYDVRALAIEALTALVARRDSPAGSFNIAARQANVLSELGVGKGQYLGLLPTLIRFSLAALNS 299          
BLAST of mRNA_D-mesarthrocarpus_Contig10177.1.1 vs. uniprot
Match: A0A7S3A7X9_9RHOD (Hypothetical protein n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A7X9_9RHOD)

HSP 1 Score: 62.0 bits (149), Expect = 1.030e-7
Identity = 49/141 (34.75%), Postives = 73/141 (51.77%), Query Frame = 1
Query:  151 VPRGRLFSLLSRARAAVAWAGGSEARVAAVRRRLMALMAMVYCHPSTEAITAFFGAQPELVQELVEVAKSKVDPGLRGVVPLDVCILAVHCLAALMHAWNGRTDIGLVTRHTNVFQELGITR-GQYGGVLPSLVRQSVAEL 570
            +PR   F+L +R R A A+ GG E R      RL+AL  +     S E +T  F   PELV ELV +A++    GL G +PL + I A+ CL ++ +  +G+           + Q L IT    + G+LPS++R  +A L
Sbjct:  270 LPRRLRFTLSTRYRRARAFVGGMETRTRHTNVRLLALATLAQMQLSPEPLTFVFHRDPELVSELVSLARADAADGL-GDLPLSIRISALKCLTSISN--HGQ----------RLKQVLSITDVSSHNGILPSMLRSEIALL 397          
BLAST of mRNA_D-mesarthrocarpus_Contig10177.1.1 vs. uniprot
Match: A0A7R9ZA64_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZA64_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 7.860e-7
Identity = 37/97 (38.14%), Postives = 54/97 (55.67%), Query Frame = 1
Query:   76 GPDGRRETSAELFLRVTSGAAQGRPVPRGRLFSLLSRARAAVAWAGGSEARVAAVRRRLMALMAMVYCHPSTEAITAFFGAQPELVQELVEVAKSKV 366
            G D    ++AELF      A     VP  RLF LLS  R A ++    + R+AAV RR+ AL+A +  +PS + +  +F AQPELV E+ ++ +  V
Sbjct:   98 GADLEVRSTAELFFLALDRAGGRESVPPSRLFPLLSEVRLARSFHRRDD-RIAAVERRMRALVATLQSNPSQDVVGGYFAAQPELVSEVCDLVRPTV 193          
BLAST of mRNA_D-mesarthrocarpus_Contig10177.1.1 vs. uniprot
Match: A0A7S1VIP8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VIP8_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 9.190e-6
Identity = 38/92 (41.30%), Postives = 56/92 (60.87%), Query Frame = 1
Query:   88 RRET--SAELFLRVTSGAAQGRPVPRGRLFSLLSRARAAVAWAGGSEARVAAVRRRLMALMAMVYCHPSTEAITAFFGAQPELVQELVEVAK 357
            RRE   +AE+F R    A  G   P  ++F+LL   R A ++   +  RV A +RRL+AL A++  HPST+ I+ +F AQPEL  ELV++ +
Sbjct:  291 RREAKPTAEIFFRCLEKA--GGKFPSDQMFALLVDVRLARSFYSQAS-RVEAAKRRLLALSAILNSHPSTDTISGYFQAQPELCVELVDLLR 379          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10177.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A1Z5KPP7_FISSO1.050e-2039.88HECT-type E3 ubiquitin transferase n=1 Tax=Fistuli... [more]
A0A1Z5JHS1_FISSO1.670e-1938.12HECT-type E3 ubiquitin transferase n=1 Tax=Fistuli... [more]
A0A7S4VU13_9STRA1.910e-1633.33Hypothetical protein (Fragment) n=2 Tax=Ditylum br... [more]
A0A7S2VVZ5_9STRA6.090e-1637.04Hypothetical protein (Fragment) n=1 Tax=Triparma p... [more]
A0A448ZD07_9STRA4.170e-1531.91HECT-type E3 ubiquitin transferase n=1 Tax=Pseudo-... [more]
B7G082_PHATC2.600e-1435.45HECT-type E3 ubiquitin transferase (Fragment) n=1 ... [more]
A0A7S2L793_9STRA1.550e-1335.15Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A7S3A7X9_9RHOD1.030e-734.75Hypothetical protein n=3 Tax=Rhodosorus marinus Ta... [more]
A0A7R9ZA64_9STRA7.860e-738.14Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S1VIP8_9STRA9.190e-641.30Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10177contigD-mesarthrocarpus_Contig10177:148..4045 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2850.Phatr36043
PFAMsDUF4414,DUF908,DUF913,HECT,UBA
Model size606
Max annot lvl2759|Eukaryota
KEGG koko:K10592,ko:K14772,ko:K17964,ko:K22370
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
Exons4
Evalue4.27e-15
EggNOG OGsCOG5021@1|root,KOG0939@2759|Eukaryota
EC2.3.2.26
Descriptionubiquitin protein ligase activity
Cds size606
COG categoryO
BRITEko00000,ko00001,ko01000,ko03009,ko03029,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789160.86732-CDS-D-mesarthrocarpus_Contig10177:147..3071680789160.86732-CDS-D-mesarthrocarpus_Contig10177:147..307Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10177 148..307 -
1680789160.8796453-CDS-D-mesarthrocarpus_Contig10177:1034..11881680789160.8796453-CDS-D-mesarthrocarpus_Contig10177:1034..1188Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10177 1035..1188 -
1680789160.891287-CDS-D-mesarthrocarpus_Contig10177:2220..24521680789160.891287-CDS-D-mesarthrocarpus_Contig10177:2220..2452Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10177 2221..2452 -
1680789160.8996644-CDS-D-mesarthrocarpus_Contig10177:3985..40451680789160.8996644-CDS-D-mesarthrocarpus_Contig10177:3985..4045Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10177 3986..4045 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10177.1.1prot_D-mesarthrocarpus_Contig10177.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10177 148..4045 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10177.1.1

>prot_D-mesarthrocarpus_Contig10177.1.1 ID=prot_D-mesarthrocarpus_Contig10177.1.1|Name=mRNA_D-mesarthrocarpus_Contig10177.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=202bp
EGENRAPSPGSHGVTDSIHLCPRPPGPDGRRETSAELFLRVTSGAAQGRP
VPRGRLFSLLSRARAAVAWAGGSEARVAAVRRRLMALMAMVYCHPSTEAI
TAFFGAQPELVQELVEVAKSKVDPGLRGVVPLDVCILAVHCLAALMHAWN
GRTDIGLVTRHTNVFQELGITRGQYGGVLPSLVRQSVAELHALSARLHGT
VR
back to top

mRNA from alignment at D-mesarthrocarpus_Contig10177:148..4045-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10177.1.1 ID=mRNA_D-mesarthrocarpus_Contig10177.1.1|Name=mRNA_D-mesarthrocarpus_Contig10177.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=3898bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10177:148..4045- (Discosporangium mesarthrocarpum MT17_79)
GAGGGGGAGAATCGTGCCCCTTCGCCAGGGAGCCACGGGGTCACTGACAG TATCCATCTGGTGAGTTATTTTTTGCTTTCTCTTTTTTCTTGCAGGTGGG GAGGGGGGGGGGTAGTGTGTGGTAGCGATGGCTGTGGGTGGAGTGGCCCC GGGGCAGGGCAGGATAGCCCTGGGGCACAAGTGGGCTAGAGGGGGCCTGG AGGTGGGGTTGGTGGGGGCTGTCTCCGCGGTGCTGTGTGTCTGAAGAGAT GGTAAGGTAGGGCATACTGGAGAGGGTTGAGTCAGGTATGCTGTCTGTTG GCTACTGCGTTCTACACTTGCTACATTACCAAGAGTACCACAGCACCAAG AGTACTGTCTACAATTATTACTGTTGTCTTAACTTTATTTTTTGCGCCTG CGCCTAACTTTCTCATGTGCGGTTGACTCCTCCACATGCCGGTGTGTACT GTCTTATGTTTTTTGTCTGGTTGTGTGGGTAATGCATGGAGTGCATAGTC CATTTCAATATGCAAACCATGCCCTAACCCTAGCAGGTTGGGCATAGTTC CCTTCACACGTGTTACCTACCTTCCCTTTGAACCCCCCCCCTTTTGACCC CTGCTGTGACCAAGACCCAGCACTTTCCTTCAGGGTTAGTTCTGTGCTGT GCTGTGCGCTGAAGACTAGCCCTAGCCCTAACCCGAACCCTAACCCTAAT TTACGCTTGCCTTCGCGTTTGCACTGTACCGTGATGTATGTACACATTGG AGCTGACCTTAATCTTAACGAACACTTGCCTTAGCATTTGTAAGGTACTG TATATATACTCTATTTCTAGCCCAACCGTAGTAAACACTTGCCTTTTGAA GACTGTCCCTGACCCCGACGCTTGACCTAGTGTTTGTGTACCGTTCAGCA CTGCACATTGAAAACTTGGTTCCAACCTGTACCTCGTTGCCACTGAAGCC TCATAACCCTCTTTTGATGAAATGTCATGGGTTTCTGTCAGTCCTGTGTG CCGGGATAATGAATCCTGATTTGACATTGTTGATGTTACACGCAGTTTTT TTTCTGGTAACCGACAAGCACACTTTTGATGTGCCGCGCACCACATGCGA AATCACCTTCATGGCTGGTGTGGGTTCTGTTGATGTCATGTCATCTGTCT GTCTATGCAAGGACTCGGTGTTTTTCGGTCAGAAAATGGCAGTTCCCGAC ACCAAGAATGTGAATCAGTTCTGAAGAGGCTAGACGCTTGTCGAAGCATT TATACTTTACAGTACTAGACATTAAAGACTTGGCCTAACATTAAGTGTTC GATGAGTATGTAATGTACCAGCACAGCATTTGAGTTTTTTTTTGAGCCTG AAACCTCCTGCCTTCCCCATCACCCCCCTATCTCTTCCTCCTCCTCCCCC CCATGTCTCCCCTCCCTCTCTCCCTTTCTCATTCCTGAACAAAACAAACA AGACAAAAAAAACCGGTTGAAAGAAGATGAAAAACAAATCAAGATATACC CTTGTATCTACAAAACACTTCTGTACCACCGCTTCACTTCACTTCACCTT ACTACCTCTTTACATATATGCCATGCCATGGCGTAAAAAACAGTGTCCCC GGCCCCCGGGCCCAGACGGGAGGCGGGAGACCTCCGCGGAGCTGTTTCTC CGTGTCACCTCCGGGGCGGCACAGGGCAGACCTGTCCCCAGGGGTCGGCT TTTCTCCCTGCTCTCCAGGGCCAGGGCTGCGGTGGCGTGGGCTGGTGGCT CTGAGGCCAGGGTGGCGGCCGTGCGGAGGAGGCTCATGGCGCTGATGGCC ATGGTGTACTGCCACCCCTCCACCGGTGCGTGTCCATGTGTGATGCTGGC ATGGGTGCTGGGGCAGAAACTTGATGTTTGTTACATGGGGCTAGCCTGGC TCTGTGTCTGCAATTCTATTTTTACTTTTTGCTTTCATTTACGCTGGTGT GCCTGCCCTTGCCCTTGCTCCTTCCCTTGCCCTTGCTCCTGACCTTGCCC CTCGCCCCTGTCCTTGCCCTTGGACTTCTTTCTGTGTTGTCTTGTAGTTG CTGTGAATGTCTTTTTAGTGTATTTTTTTTTCTTTAGTGTGTGTGCGTGT ATATTTTCCTGTCCTCATTTTTTTTTTTTCAATTTTCAAACTTTGTTTGA GGGTGTGTCTGTTGGGGTTAAGGTTGAAGTAGGGTTCAGGTCAGGGCCAG GGACGTGGACTGGAGTTGGTAGGGGGGTCATGGATTGGGGTTCGGGTGAG GGCTGGGGTCAAGGTAAGGATTAACGTGACTGATGCATCGCCGTCCTTCC ATGTGTCCAGGTTAGGGGCGGGGAGCTATTTTTGAGGCGGAATTGGGGTT TTGTTTTTTCTGCCTTTAGACATGTGAGGTGGTGCTTTGTGTGTGGTCCG ACTTCTTTTACCGTTCTACACTGAGAACCAAGGGTTAGCGTTAGGGCTAA AGTCGCAGCGGCACTGATGGCTTGAACCTCAACCCCTAACCAACCCTGCT ACCTGAACCCTGACCGTAAGTGAAGAAAACAAATTTGTAGATTTCATTGC TTAGATGCGGATTTAAACCACTGACCCAAGGAATTTCAGTACTTTGCTCT ACCAACTGAGCTACCTAAACACTATGCATTTCTTGGGTTGGGCTTAAACC TTTTTATTCTCTACAGATCATCCTCTTTTTTGCGGAGGGCCTCACGGCCT TCTTCGGGGCCCGACCCTAACCCTAGCCCTAACCCTGGCCCTAATCATTC CTTTGGTGTCCCTTTTTGCAGGGGCAATCTCGGCCTTCTTCGGGGCCTGA CCCTAACCCTAGCCCTATCCCTGGCCCTAATCATTCCTTTGGTGTCCCTT TTTGCAGAGGCGATCACGGCCTTCTTCGGGGCCCAGCCAGAGCTGGTTCA GGAGCTGGTCGAGGTGGCCAAGTCCAAGGTGGACCCTGGGCTCAGGGGAG TGGTCCCCCTGGATGTGTGCATCCTGGCTGTGCACTGCCTGGCTGCGCTC ATGCACGCCTGGTATGTTTATAGGAAAACCCTTGTAACCTGCTGCAGGGT TGGGTTAGCACTGGGCTTTAGGCTTCTTTTTTCTTTTGGGCATTTTTTTT CTGTGAGCAGAGTTTTGGGTGGAGGGTGAACTAAGCTTGAATCTATCACA AGCACGTGCCTATCTGGATCTGAAGCTGAGAACTCTTTTTTGTCTGGTGT CTGGTGTCTGGTGTCTAGTGGCTGATGTCGTCTGATGTCAGCCTTATTAT GACGTGGTGCTCTTTTCTCTCTCTCTCTCACTGTACAGTGAAATATAAGT CCAATCCATCTGTCCATCCATCCGTCCATCCACCCGTCCGTGAGTACCAT GTATTATGTATTATGTATTATGTATTACGTATGTATGTATGTATGATTAT ACATGTTAACACACACAGTCACAGATGCAGCCACGATACACATGCACACA TAGTTACACACACAAGACATGCATTCATTACACAGAGTACACAATCTATA AGTTTAGCATTCACAGCTTTTCTTGCCAGTTCCATAGCGTTTTCACTGGA TTCAGAAAAGTTGCTGTTTGAGATTTTTTTTTGTTTTGTGGAACTTTGTT CCACACCTAACTAGATCTTCGATTGTTCAGTTACAGTCAATTTATTGATT CGATTTTTCAAAACATAGCACTCTGCCTTTGTTTTTACAGCTTCTTGAGC TGCTGAAGCCCCCAAAATTTTACACCCATTCCCGACAGGAATGGGAGGAC CGACATCGGCCTGGTGACGCGCCACACCAATGTGTTTCAGGAGCTGGGCA TAACCAGGGGGCAGTACGGAGGTGTGCTCCCCTCCCTTGTGCGACAGTCG GTGGCAGAGTTACACGCACTATCCGCACGCCTACACGGGACAGTGAGG
back to top

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10177:148..4045-

>mRNA_D-mesarthrocarpus_Contig10177.1.1 ID=mRNA_D-mesarthrocarpus_Contig10177.1.1|Name=mRNA_D-mesarthrocarpus_Contig10177.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=606bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10177:148..4045- (Discosporangium mesarthrocarpum MT17_79)
GAGGGGGAGAATCGTGCCCCTTCGCCAGGGAGCCACGGGGTCACTGACAG
TATCCATCTGTGTCCCCGGCCCCCGGGCCCAGACGGGAGGCGGGAGACCT
CCGCGGAGCTGTTTCTCCGTGTCACCTCCGGGGCGGCACAGGGCAGACCT
GTCCCCAGGGGTCGGCTTTTCTCCCTGCTCTCCAGGGCCAGGGCTGCGGT
GGCGTGGGCTGGTGGCTCTGAGGCCAGGGTGGCGGCCGTGCGGAGGAGGC
TCATGGCGCTGATGGCCATGGTGTACTGCCACCCCTCCACCGAGGCGATC
ACGGCCTTCTTCGGGGCCCAGCCAGAGCTGGTTCAGGAGCTGGTCGAGGT
GGCCAAGTCCAAGGTGGACCCTGGGCTCAGGGGAGTGGTCCCCCTGGATG
TGTGCATCCTGGCTGTGCACTGCCTGGCTGCGCTCATGCACGCCTGGAAT
GGGAGGACCGACATCGGCCTGGTGACGCGCCACACCAATGTGTTTCAGGA
GCTGGGCATAACCAGGGGGCAGTACGGAGGTGTGCTCCCCTCCCTTGTGC
GACAGTCGGTGGCAGAGTTACACGCACTATCCGCACGCCTACACGGGACA
GTGAGG
back to top