mRNA_D-mesarthrocarpus_Contig10176.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10176.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10176.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10176.1.1 vs. uniprot
Match: D7FJT5_ECTSI (Splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJT5_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 6.000e-18
Identity = 37/49 (75.51%), Postives = 46/49 (93.88%), Query Frame = 1 
Query:    1 ELFAYPINWQVVESCDIIRSKMRPWVVKKMVDYLGEEEKTLTEFIVTKL 147
            ELFAY INWQ+VE  +II+SKMRPW+VKK+++YLGEEEKTLTEF++TKL
Sbjct:  709 ELFAYEINWQMVEQHNIIQSKMRPWIVKKIIEYLGEEEKTLTEFVLTKL 757
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BLAST of mRNA_D-mesarthrocarpus_Contig10176.1.1 vs. uniprot
Match: A0A7S2CNP4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CNP4_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.800e-14
Identity = 29/48 (60.42%), Postives = 42/48 (87.50%), Query Frame = 1 
Query:    4 LFAYPINWQVVESCDIIRSKMRPWVVKKMVDYLGEEEKTLTEFIVTKL 147
            LF++PI+W V+++  I+ + MRPW+VKK+V+YLGEEEKTL +FI+TKL
Sbjct:   53 LFSFPIHWDVLDAHRIVATNMRPWIVKKIVEYLGEEEKTLIDFIITKL 100
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BLAST of mRNA_D-mesarthrocarpus_Contig10176.1.1 vs. uniprot
Match: A0A7S3UVP2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVP2_HETAK)

HSP 1 Score: 68.9 bits (167), Expect = 4.080e-13
Identity = 29/48 (60.42%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:    4 LFAYPINWQVVESCDIIRSKMRPWVVKKMVDYLGEEEKTLTEFIVTKL 147
            LFAYP+ W VV+  DII+SK++ W+VKK+V++LGEEE+TL +FI +KL
Sbjct:  105 LFAYPVAWAVVDEHDIIKSKLKAWIVKKIVEFLGEEEETLIDFICSKL 152
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BLAST of mRNA_D-mesarthrocarpus_Contig10176.1.1 vs. uniprot
Match: A0A7S2XWQ2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWQ2_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.600e-12
Identity = 28/48 (58.33%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:    4 LFAYPINWQVVESCDIIRSKMRPWVVKKMVDYLGEEEKTLTEFIVTKL 147
            LFAY +NW +V   D++ SK+RPWV KK+ +YLGEEE+TL +FIV++L
Sbjct:  153 LFAYKVNWDLVHKHDVVGSKLRPWVSKKITEYLGEEERTLIDFIVSQL 200
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BLAST of mRNA_D-mesarthrocarpus_Contig10176.1.1 vs. uniprot
Match: K3WIU2_GLOUD (PWI domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WIU2_GLOUD)

HSP 1 Score: 68.2 bits (165), Expect = 4.020e-12
Identity = 29/49 (59.18%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:    1 ELFAYPINWQVVESCDIIRSKMRPWVVKKMVDYLGEEEKTLTEFIVTKL 147
            ELF+YPI+W  V+   I+ +KM PWV KK+++YLGEEE TL EFI+ KL
Sbjct:  464 ELFSYPIDWMAVDKHKIVAAKMAPWVAKKIIEYLGEEEPTLIEFILKKL 512
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BLAST of mRNA_D-mesarthrocarpus_Contig10176.1.1 vs. uniprot
Match: A0A2P6N0A1_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N0A1_9EUKA)

HSP 1 Score: 67.8 bits (164), Expect = 5.500e-12
Identity = 27/49 (55.10%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:    1 ELFAYPINWQVVESCDIIRSKMRPWVVKKMVDYLGEEEKTLTEFIVTKL 147
            ++FAYPI+W+ +E  +II +K+RPWV KK V+YLG+EEKTL  +IV ++
Sbjct:  521 QVFAYPIDWETIEKENIIENKLRPWVTKKFVEYLGQEEKTLIAYIVNQI 569
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BLAST of mRNA_D-mesarthrocarpus_Contig10176.1.1 vs. uniprot
Match: A0A4U5LNI4_STECR (PWI domain-containing protein n=1 Tax=Steinernema carpocapsae TaxID=34508 RepID=A0A4U5LNI4_STECR)

HSP 1 Score: 63.5 bits (153), Expect = 1.180e-11
Identity = 25/49 (51.02%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:    1 ELFAYPINWQVVESCDIIRSKMRPWVVKKMVDYLGEEEKTLTEFIVTKL 147
            +LFAYPI W+ V+  D+++S++RPWV KK+V+Y+GEEE +L +F+  K+
Sbjct:   26 DLFAYPIEWEFVDE-DLVKSRVRPWVTKKIVEYIGEEEASLVDFVCDKV 73
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BLAST of mRNA_D-mesarthrocarpus_Contig10176.1.1 vs. uniprot
Match: A0A835Z4I4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4I4_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.920e-11
Identity = 29/48 (60.42%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    4 LFAYPINWQVVESCDIIRSKMRPWVVKKMVDYLGEEEKTLTEFIVTKL 147
            LFAYP++W VV S  I+ +KMRPWVV+K+ +YLGEEE TL +F+  KL
Sbjct:  673 LFAYPLDWGVVTSHGIVANKMRPWVVRKIREYLGEEEPTLIDFVCAKL 720
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BLAST of mRNA_D-mesarthrocarpus_Contig10176.1.1 vs. uniprot
Match: L8H642_ACACA (PWI domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H642_ACACA)

HSP 1 Score: 63.9 bits (154), Expect = 1.250e-10
Identity = 23/49 (46.94%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:    1 ELFAYPINWQVVESCDIIRSKMRPWVVKKMVDYLGEEEKTLTEFIVTKL 147
            +LF + ++W +V+  +I++ +M+PWV KK+V+YLGEEE TL EF++ K+
Sbjct:  594 DLFNFQLSWDIVDEAEIVQKRMKPWVTKKIVEYLGEEEATLIEFVLAKM 642
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BLAST of mRNA_D-mesarthrocarpus_Contig10176.1.1 vs. uniprot
Match: A0A7S2W6J1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W6J1_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.710e-10
Identity = 24/49 (48.98%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:    1 ELFAYPINWQVVESCDIIRSKMRPWVVKKMVDYLGEEEKTLTEFIVTKL 147
            ELFA PI+W  V++ D++++ +RPW+  K+V+YLG+EEK+L +FI  K+
Sbjct:  604 ELFALPIDWAAVDANDLVKTSLRPWIASKIVEYLGQEEKSLIDFIADKV 652
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10176.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJT5_ECTSI6.000e-1875.51Splicing factor PWI domain-containing protein / RN... [more]
A0A7S2CNP4_9STRA1.800e-1460.42Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S3UVP2_HETAK4.080e-1360.42Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2XWQ2_9STRA1.600e-1258.33Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
K3WIU2_GLOUD4.020e-1259.18PWI domain-containing protein n=1 Tax=Globisporang... [more]
A0A2P6N0A1_9EUKA5.500e-1255.10Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
A0A4U5LNI4_STECR1.180e-1151.02PWI domain-containing protein n=1 Tax=Steinernema ... [more]
A0A835Z4I4_9STRA1.920e-1160.42Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
L8H642_ACACA1.250e-1046.94PWI domain containing protein n=1 Tax=Acanthamoeba... [more]
A0A7S2W6J1_9STRA1.710e-1048.98Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10176contigD-mesarthrocarpus_Contig10176:888..1034 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FJT5
Preferred nameSNU71
PFAMsPWI,RRM_1
Model size147
Max annot lvl2759|Eukaryota
KEGG koko:K12822
KEGG Pathwayko03040,map03040
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000375,GO:0000377,GO:0000381,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005685,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0010468,GO:0010941,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0030532,GO:0031323,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0042981,GO:0043067,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043484,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0048024,GO:0050684,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0070013,GO:0071004,GO:0071010,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1903311,GO:1990904
Exons1
Evalue9.84e-19
EggNOG OGsKOG2253@1|root,KOG2253@2759|Eukaryota
DescriptionmRNA processing
Cds size147
COG categoryS
BRITEko00000,ko00001,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789160.8363614-CDS-D-mesarthrocarpus_Contig10176:887..10341680789160.8363614-CDS-D-mesarthrocarpus_Contig10176:887..1034Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10176 888..1034 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10176.1.1prot_D-mesarthrocarpus_Contig10176.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10176 888..1034 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10176.1.1

>prot_D-mesarthrocarpus_Contig10176.1.1 ID=prot_D-mesarthrocarpus_Contig10176.1.1|Name=mRNA_D-mesarthrocarpus_Contig10176.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=49bp
ELFAYPINWQVVESCDIIRSKMRPWVVKKMVDYLGEEEKTLTEFIVTKL
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mRNA from alignment at D-mesarthrocarpus_Contig10176:888..1034-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10176.1.1 ID=mRNA_D-mesarthrocarpus_Contig10176.1.1|Name=mRNA_D-mesarthrocarpus_Contig10176.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=147bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10176:888..1034- (Discosporangium mesarthrocarpum MT17_79)
GAGCTTTTCGCATACCCCATCAACTGGCAGGTGGTGGAGTCCTGCGACAT
CATAAGGTCCAAGATGCGTCCCTGGGTGGTGAAGAAGATGGTGGACTACC
TGGGGGAGGAGGAGAAGACACTCACTGAGTTCATCGTCACCAAGCTT
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10176:888..1034-

>mRNA_D-mesarthrocarpus_Contig10176.1.1 ID=mRNA_D-mesarthrocarpus_Contig10176.1.1|Name=mRNA_D-mesarthrocarpus_Contig10176.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=147bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10176:888..1034- (Discosporangium mesarthrocarpum MT17_79)
GAGCTTTTCGCATACCCCATCAACTGGCAGGTGGTGGAGTCCTGCGACAT
CATAAGGTCCAAGATGCGTCCCTGGGTGGTGAAGAAGATGGTGGACTACC
TGGGGGAGGAGGAGAAGACACTCACTGAGTTCATCGTCACCAAGCTT
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