mRNA_D-mesarthrocarpus_Contig10176.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10176.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig10176.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10176.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10176contigD-mesarthrocarpus_Contig10176:1108..1766 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size562
Hectar predicted targeting categoryother localisation
Exons2
Cds size309
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789160.7867856-CDS-D-mesarthrocarpus_Contig10176:1107..13301680789160.7867856-CDS-D-mesarthrocarpus_Contig10176:1107..1330Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10176 1108..1330 -
1680789160.796398-CDS-D-mesarthrocarpus_Contig10176:1427..15131680789160.796398-CDS-D-mesarthrocarpus_Contig10176:1427..1513Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10176 1428..1513 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789160.8056586-UTR-D-mesarthrocarpus_Contig10176:1513..17661680789160.8056586-UTR-D-mesarthrocarpus_Contig10176:1513..1766Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10176 1514..1766 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10176.2.1prot_D-mesarthrocarpus_Contig10176.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10176 1108..1513 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10176.2.1

>prot_D-mesarthrocarpus_Contig10176.2.1 ID=prot_D-mesarthrocarpus_Contig10176.2.1|Name=mRNA_D-mesarthrocarpus_Contig10176.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=103bp
MRWNYLSKMRVHMRYKRKKKKDDNSKKEKALRCPDQSSALPRTCTLKPGC
IAKFSPPTPGHAVPQVTPRADPWYTLPGLGTSLAECGPCDENRVCRGPNG
TRS
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mRNA from alignment at D-mesarthrocarpus_Contig10176:1108..1766-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10176.2.1 ID=mRNA_D-mesarthrocarpus_Contig10176.2.1|Name=mRNA_D-mesarthrocarpus_Contig10176.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=659bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10176:1108..1766- (Discosporangium mesarthrocarpum MT17_79)
GGATTATTATATTTGGTTAGGATTAGGGTTAGGGTTGGTACAAGGTAATA
GTGGTAGTAGTAGTGATGATACAGCTATAGGGTTAGGGTTGTTGCTTCCT
CGTGCTTTTTTTCATGTGTTGTTTGATCGTGTCAAACCCGTGGTCAAGGG
CTGAGAAAAAGTGAGAAAAAGTGGGAAACAAGGCATGAAAAACTCCTGAA
CGACATCAGTTTTGGGGAGAGTTGAAGCCTGGGATCTCGTGCCTATCCGT
AGCATGAGGTGGAATTACTTGTCAAAGATGAGGGTGCATATGAGGTACAA
AAGAAAAAAAAAAAAAGATGACAATAGCAAGAAGGAGAAGTAGAAGGAGA
AGGAGGAGGAGAAGAAGAAGAAGAAGAAGAAATGATGCTGGCTGGTGGTT
CGTAGAGAGGAGTGTATGCGCCCTGTGTGCCTCTAGGGCTCTTAGGTGCC
CCGACCAGTCTTCTGCGTTGCCCCGAACCTGCACCCTAAAGCCAGGATGC
ATCGCGAAGTTTTCCCCCCCGACTCCAGGGCATGCGGTGCCGCAGGTAAC
ACCTCGAGCTGATCCCTGGTACACCTTGCCGGGGCTCGGCACGTCCCTGG
CAGAGTGCGGCCCGTGTGATGAGAATCGGGTGTGTAGGGGGCCTAACGGT
ACGCGCAGT
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10176:1108..1766-

>mRNA_D-mesarthrocarpus_Contig10176.2.1 ID=mRNA_D-mesarthrocarpus_Contig10176.2.1|Name=mRNA_D-mesarthrocarpus_Contig10176.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=309bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10176:1108..1766- (Discosporangium mesarthrocarpum MT17_79)
ATGAGGTGGAATTACTTGTCAAAGATGAGGGTGCATATGAGGTACAAAAG
AAAAAAAAAAAAAGATGACAATAGCAAGAAGGAGAAGGCTCTTAGGTGCC
CCGACCAGTCTTCTGCGTTGCCCCGAACCTGCACCCTAAAGCCAGGATGC
ATCGCGAAGTTTTCCCCCCCGACTCCAGGGCATGCGGTGCCGCAGGTAAC
ACCTCGAGCTGATCCCTGGTACACCTTGCCGGGGCTCGGCACGTCCCTGG
CAGAGTGCGGCCCGTGTGATGAGAATCGGGTGTGTAGGGGGCCTAACGGT
ACGCGCAGT
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