mRNA_D-mesarthrocarpus_Contig10172.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10172.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10172.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10172.1.1 vs. uniprot
Match: D7FWH9_ECTSI (VPS9 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWH9_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 1.160e-29
Identity = 64/150 (42.67%), Postives = 88/150 (58.67%), Query Frame = 1
Query:    1 TTTTTTQEALRNMGQGKCPADIMDSLVRCCDIIFSMLQYAR------GRAVPGPAGESQGMAHTPGEERATGYESQGAADEFFPVFLFVVLKANTPRLHSMCKYVQAYYSPTGLISSRPGYCFVNLKSAVQYLMNVDAFALKMDPHVFAR 432
            T  T  QE LR MG+G+CP DI+  +VRCCD +F+++   R      GR              +         +  G AD+F PV ++VVL+A  PRLHSMC+YVQA++SP  L+S RPGYCFV L+SAV++LM ++  A+ M    F R
Sbjct:  304 TVLTLAQEELRKMGRGRCPGDIVSRVVRCCDTLFALIDQGRRFKQGVGRXXXXXXXXXXXXXDSNVSSWRPERDPAGTADDFLPVLIYVVLRARVPRLHSMCEYVQAFHSPVALMS-RPGYCFVALRSAVEFLMTLNGAAVGMSEQDFRR 452          
BLAST of mRNA_D-mesarthrocarpus_Contig10172.1.1 vs. uniprot
Match: F0YG72_AURAN (VPS9 domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YG72_AURAN)

HSP 1 Score: 92.4 bits (228), Expect = 8.890e-22
Identity = 47/110 (42.73%), Postives = 68/110 (61.82%), Query Frame = 1
Query:   61 DIMDSLVRCCDIIFSMLQYARGRAVPGPAGESQGMAHTPGEERATGYESQGAADEFFPVFLFVVLKANTPRLHSMCKYVQAYYSPTGLISSRPGYCFVNLKSAVQYLMNV 390
            D +D +VRC  +IFS+L  AR                     R    ES+  AD+F P+F++VVL A+ PRLHS C YV+A+++PT L+S + GYCFVNL+SA+++L+ V
Sbjct:    1 DKVDCVVRCASMIFSVLNLARAE----------------NSSRKGTSESRAGADDFLPIFIYVVLHADVPRLHSNCDYVEAFHNPTALMS-KAGYCFVNLRSAIEFLLTV 93          
BLAST of mRNA_D-mesarthrocarpus_Contig10172.1.1 vs. uniprot
Match: A0A8K1CLE3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CLE3_PYTOL)

HSP 1 Score: 98.2 bits (243), Expect = 4.410e-21
Identity = 53/138 (38.41%), Postives = 81/138 (58.70%), Query Frame = 1
Query:   19 QEALRNMGQGKCPADIMDSLVRCCDIIFSMLQYARGRAVPGPAGESQGMAHTPGEERATGYESQGAADEFFPVFLFVVLKANTPRLHSMCKYVQAYYSPTGLISSRPGYCFVNLKSAVQYLMNVDAFALKMDPHVFAR 432
            ++ LR +   + P D ++ +VRCC IIFS+L  ARG +           A+ PG            AD+F PVF+++VL++  PRL+S C+Y+ AY +   L+S + GYCFVNL+SA++++M VDA  L +    F R
Sbjct:  445 EDELRRINSFRSPGDKINCIVRCCSIIFSVLNLARGDS-----------ANRPG------------ADDFLPVFIYIVLQSKIPRLYSNCEYIAAYRNSADLMS-KAGYCFVNLRSAIEFIMVVDASMLSVSEQDFER 558          
BLAST of mRNA_D-mesarthrocarpus_Contig10172.1.1 vs. uniprot
Match: A0A329SIN0_9STRA (VPS9 domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SIN0_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 4.220e-20
Identity = 49/138 (35.51%), Postives = 77/138 (55.80%), Query Frame = 1
Query:   19 QEALRNMGQGKCPADIMDSLVRCCDIIFSMLQYARGRAVPGPAGESQGMAHTPGEERATGYESQGAADEFFPVFLFVVLKANTPRLHSMCKYVQAYYSPTGLISSRPGYCFVNLKSAVQYLMNVDAFALKMDPHVFAR 432
            ++ LR +   + P D ++ +VRCC +IFS+L  +RG +                        S+  AD+F PVF+++VL +  PRLHS C+Y+ AY +   L+S + GYCFVNL+SAV+++M +D   L +    F R
Sbjct:  582 EDELRRINSFRSPGDKINCIVRCCSVIFSVLNLSRGDS-----------------------GSRPGADDFLPVFIYIVLHSQIPRLHSNCEYISAYRNQADLMS-KAGYCFVNLRSAVEFIMAMDGSMLSISDDEFQR 695          
BLAST of mRNA_D-mesarthrocarpus_Contig10172.1.1 vs. uniprot
Match: D0NF41_PHYIT (VPS9 domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NF41_PHYIT)

HSP 1 Score: 95.1 bits (235), Expect = 5.140e-20
Identity = 49/138 (35.51%), Postives = 77/138 (55.80%), Query Frame = 1
Query:   19 QEALRNMGQGKCPADIMDSLVRCCDIIFSMLQYARGRAVPGPAGESQGMAHTPGEERATGYESQGAADEFFPVFLFVVLKANTPRLHSMCKYVQAYYSPTGLISSRPGYCFVNLKSAVQYLMNVDAFALKMDPHVFAR 432
            ++ LR +   + P D ++ +VRCC +IFS+L  +RG +                        S+  AD+F PVF+++VL +  PRLHS C+Y+ AY +   L+S + GYCFVNL+SAV+++M +D   L +    F R
Sbjct:  417 EDELRRINSFRSPGDKINCIVRCCSVIFSVLNLSRGDS-----------------------GSRPGADDFLPVFIYIVLHSQIPRLHSNCEYIAAYRNQADLMS-KAGYCFVNLRSAVEFIMAMDGSMLSISDDEFKR 530          
BLAST of mRNA_D-mesarthrocarpus_Contig10172.1.1 vs. uniprot
Match: A0A6A4EIB8_9STRA (VPS9 domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A4EIB8_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 7.820e-20
Identity = 48/138 (34.78%), Postives = 77/138 (55.80%), Query Frame = 1
Query:   19 QEALRNMGQGKCPADIMDSLVRCCDIIFSMLQYARGRAVPGPAGESQGMAHTPGEERATGYESQGAADEFFPVFLFVVLKANTPRLHSMCKYVQAYYSPTGLISSRPGYCFVNLKSAVQYLMNVDAFALKMDPHVFAR 432
            ++ LR +   + P D ++ +VRCC +IFS+L  +RG +                        S+  AD+F PVF+++VL +  PRLHS C+Y+ AY +   L+S + GYCFVNL+SA++++M +D   L +    F R
Sbjct:  566 EDELRRINSFRSPGDKINCIVRCCSVIFSVLNLSRGDS-----------------------GSRPGADDFLPVFIYIVLHSQIPRLHSNCEYISAYRNQADLMS-KAGYCFVNLRSAIEFIMVMDGSMLSLSGDEFQR 679          
BLAST of mRNA_D-mesarthrocarpus_Contig10172.1.1 vs. uniprot
Match: G4Z8U2_PHYSP (VPS9 domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z8U2_PHYSP)

HSP 1 Score: 94.7 bits (234), Expect = 8.080e-20
Identity = 48/138 (34.78%), Postives = 77/138 (55.80%), Query Frame = 1
Query:   19 QEALRNMGQGKCPADIMDSLVRCCDIIFSMLQYARGRAVPGPAGESQGMAHTPGEERATGYESQGAADEFFPVFLFVVLKANTPRLHSMCKYVQAYYSPTGLISSRPGYCFVNLKSAVQYLMNVDAFALKMDPHVFAR 432
            ++ LR +   + P D ++ +VRCC +IFS+L  +RG +                        S+  AD+F PVF+++VL +  PRLHS C+Y+ AY +   L+S + GYCFVNL+SA++++M +D   L +    F R
Sbjct:  569 EDELRRINSFRSPGDKINCIVRCCSVIFSVLNLSRGDS-----------------------GSRPGADDFLPVFIYIVLHSQIPRLHSNCEYISAYRNQADLMS-KAGYCFVNLRSAIEFIMVMDGSMLSISDDEFQR 682          
BLAST of mRNA_D-mesarthrocarpus_Contig10172.1.1 vs. uniprot
Match: A0A2D4CFQ8_PYTIN (VPS9 domain-containing protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CFQ8_PYTIN)

HSP 1 Score: 93.2 bits (230), Expect = 2.620e-19
Identity = 50/138 (36.23%), Postives = 78/138 (56.52%), Query Frame = 1
Query:   19 QEALRNMGQGKCPADIMDSLVRCCDIIFSMLQYARGRAVPGPAGESQGMAHTPGEERATGYESQGAADEFFPVFLFVVLKANTPRLHSMCKYVQAYYSPTGLISSRPGYCFVNLKSAVQYLMNVDAFALKMDPHVFAR 432
            ++ LR +   + P D ++ +VRCC IIF +L  +RG +           ++ PG            AD+F PVF+++VL +  PRLHS C+Y+ AY +   L+S + GYCFVNL+SA++++  VDA  L +    F R
Sbjct:  471 EDELRRINACRAPGDKINCIVRCCSIIFGVLNLSRGDS-----------SNRPG------------ADDFLPVFIYIVLXSKIPRLHSNCEYIAAYRNSADLMS-KAGYCFVNLRSAIEFINVVDASMLSISDEDFKR 584          
BLAST of mRNA_D-mesarthrocarpus_Contig10172.1.1 vs. uniprot
Match: A0A024U9K7_9STRA (VPS9 domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U9K7_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 3.590e-19
Identity = 50/136 (36.76%), Postives = 78/136 (57.35%), Query Frame = 1
Query:   19 QEALRNMGQGKCPADIMDSLVRCCDIIFSMLQYARGRAVPGPAGESQGMAHTPGEERATGYESQGAADEFFPVFLFVVLKANTPRLHSMCKYVQAYYSPTGLISSRPGYCFVNLKSAVQYLMNVDAFALKMDPHVF 426
            Q+ LR++ + + P D ++ +VRCC IIFS+L  ARG  V                       S+  AD+F PVF+++VL +  P L S  +Y+ AY +P  L+S + GYCFVNL+SA+++++ +DA  L +D   F
Sbjct:  474 QDELRHINEYRSPGDKINCIVRCCSIIFSVLNLARGSDVM----------------------SRPGADDFLPVFIYLVLHSQVPSLVSNAEYIAAYRNPADLMS-KAGYCFVNLRSAIEFILVLDASMLSIDETEF 586          
BLAST of mRNA_D-mesarthrocarpus_Contig10172.1.1 vs. uniprot
Match: A0A6A5ABS2_9STRA (VPS9 domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5ABS2_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 4.900e-19
Identity = 50/136 (36.76%), Postives = 78/136 (57.35%), Query Frame = 1
Query:   19 QEALRNMGQGKCPADIMDSLVRCCDIIFSMLQYARGRAVPGPAGESQGMAHTPGEERATGYESQGAADEFFPVFLFVVLKANTPRLHSMCKYVQAYYSPTGLISSRPGYCFVNLKSAVQYLMNVDAFALKMDPHVF 426
            Q+ LR +   + P D ++ +VRCC IIFS+L  ARG       G++                S+  AD+F PVF+++VL +  P L S  +Y+ AY +P  L+S + GYCFVNL+SA+++++ +DA  L +D   F
Sbjct:  160 QDELRRINDCRSPGDKINCIVRCCSIIFSVLNLARG-------GDAL---------------SRPGADDFLPVFIYLVLHSQVPNLVSNAEYIAAYRNPADLMS-KAGYCFVNLRSAIEFILVLDATMLSVDAAEF 272          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10172.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWH9_ECTSI1.160e-2942.67VPS9 domain-containing protein n=2 Tax=Ectocarpus ... [more]
F0YG72_AURAN8.890e-2242.73VPS9 domain-containing protein (Fragment) n=1 Tax=... [more]
A0A8K1CLE3_PYTOL4.410e-2138.41Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A329SIN0_9STRA4.220e-2035.51VPS9 domain-containing protein n=2 Tax=Phytophthor... [more]
D0NF41_PHYIT5.140e-2035.51VPS9 domain-containing protein n=2 Tax=Phytophthor... [more]
A0A6A4EIB8_9STRA7.820e-2034.78VPS9 domain-containing protein n=5 Tax=Phytophthor... [more]
G4Z8U2_PHYSP8.080e-2034.78VPS9 domain-containing protein n=1 Tax=Phytophthor... [more]
A0A2D4CFQ8_PYTIN2.620e-1936.23VPS9 domain-containing protein (Fragment) n=1 Tax=... [more]
A0A024U9K7_9STRA3.590e-1936.76VPS9 domain-containing protein n=2 Tax=Aphanomyces... [more]
A0A6A5ABS2_9STRA4.900e-1936.76VPS9 domain-containing protein n=1 Tax=Aphanomyces... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10172contigD-mesarthrocarpus_Contig10172:3539..4248 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FWH9
Preferred nameMIB1
PFAMsAnk,Ank_2,Ank_4,MIB_HERC2,VPS9,WW,ZZ,zf-C3HC4_3
Model size435
Max annot lvl2759|Eukaryota
KEGG koko:K10645
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.9e-30
EggNOG OGsCOG0666@1|root,KOG2319@2759|Eukaryota
EC2.3.2.27
Descriptionguanyl-nucleotide exchange factor activity
Cds size435
COG categoryGM
BRITEko00000,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789160.6465175-CDS-D-mesarthrocarpus_Contig10172:3538..36411680789160.6465175-CDS-D-mesarthrocarpus_Contig10172:3538..3641Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10172 3539..3641 -
1680789160.6691277-CDS-D-mesarthrocarpus_Contig10172:3916..42481680789160.6691277-CDS-D-mesarthrocarpus_Contig10172:3916..4248Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10172 3917..4248 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10172.1.1prot_D-mesarthrocarpus_Contig10172.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10172 3539..4248 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10172.1.1

>prot_D-mesarthrocarpus_Contig10172.1.1 ID=prot_D-mesarthrocarpus_Contig10172.1.1|Name=mRNA_D-mesarthrocarpus_Contig10172.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=145bp
TTTTTTQEALRNMGQGKCPADIMDSLVRCCDIIFSMLQYARGRAVPGPAG
ESQGMAHTPGEERATGYESQGAADEFFPVFLFVVLKANTPRLHSMCKYVQ
AYYSPTGLISSRPGYCFVNLKSAVQYLMNVDAFALKMDPHVFAR*
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mRNA from alignment at D-mesarthrocarpus_Contig10172:3539..4248-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10172.1.1 ID=mRNA_D-mesarthrocarpus_Contig10172.1.1|Name=mRNA_D-mesarthrocarpus_Contig10172.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=710bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10172:3539..4248- (Discosporangium mesarthrocarpum MT17_79)
ACCACTACCACCACTACCCAGGAGGCACTGCGAAACATGGGCCAAGGGAA ATGCCCGGCAGACATCATGGACTCCCTGGTCCGTTGCTGTGACATCATCT TCAGCATGCTGCAGTATGCGAGGGGGAGGGCAGTGCCTGGCCCTGCAGGA GAAAGCCAAGGGATGGCACACACTCCAGGCGAGGAACGTGCCACTGGCTA TGAATCACAAGGAGCAGCAGACGAGTTCTTCCCAGTATTCCTATTCGTGG TCCTAAAGGCCAATACCCCACGCCTCCACTCCATGTGCAAGTATGTGCAG GCTTACTACAGCCCGACAGGGCTCATATCAAGGTGAGCCTCCAGTGGCCA CCACCTCTAGTCCTCTAGTGGAAGTGGCTCAGGTGCTGGTGTTGACATGT ACAATTAGTGGCTGCAACATGCTGATCGGGTTTGTAAACCTCCTGTAGGG TAATTCTCTCAACCTGTTCCCTCTTCATTGGCATGTATAAATGTCCAGTA TGTGATACTGTCGAGTGAAGGATTCATGTGCGTTTGTCCTTGTCTGACCC ACAGAGTCGTTACCCTTCCCACCATTCATCAATAATGACAACCCACTTTG TTGTGAGCAGGCCTGGATATTGCTTTGTTAACCTCAAGAGCGCTGTCCAG TATCTGATGAATGTGGATGCCTTTGCCCTAAAGATGGACCCTCATGTATT TGCAAGGTAA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10172:3539..4248-

>mRNA_D-mesarthrocarpus_Contig10172.1.1 ID=mRNA_D-mesarthrocarpus_Contig10172.1.1|Name=mRNA_D-mesarthrocarpus_Contig10172.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=435bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10172:3539..4248- (Discosporangium mesarthrocarpum MT17_79)
ACCACTACCACCACTACCCAGGAGGCACTGCGAAACATGGGCCAAGGGAA
ATGCCCGGCAGACATCATGGACTCCCTGGTCCGTTGCTGTGACATCATCT
TCAGCATGCTGCAGTATGCGAGGGGGAGGGCAGTGCCTGGCCCTGCAGGA
GAAAGCCAAGGGATGGCACACACTCCAGGCGAGGAACGTGCCACTGGCTA
TGAATCACAAGGAGCAGCAGACGAGTTCTTCCCAGTATTCCTATTCGTGG
TCCTAAAGGCCAATACCCCACGCCTCCACTCCATGTGCAAGTATGTGCAG
GCTTACTACAGCCCGACAGGGCTCATATCAAGCAGGCCTGGATATTGCTT
TGTTAACCTCAAGAGCGCTGTCCAGTATCTGATGAATGTGGATGCCTTTG
CCCTAAAGATGGACCCTCATGTATTTGCAAGGTAA
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