mRNA_D-mesarthrocarpus_Contig10171.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10171.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10171.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10171.1.1 vs. uniprot
Match: A0A7S2PB29_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PB29_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 3.290e-16
Identity = 43/85 (50.59%), Postives = 53/85 (62.35%), Query Frame = 1
Query:    1 FMLTVFSILGQQLFSGVLHSRCRLTPYPVRLGE-CSSVYEDCWPQYLSNVSSSPEDWACLLEEGGGGAVENDDSSWTRRSDSPWF 252
            F L  FSI+G   + G+LHSRCRLTPYPV L + C S  E CW  YL+ V S+P  + CL EE        +DSSWT+ S SPW+
Sbjct:  192 FFLACFSIIGVVFWRGILHSRCRLTPYPVVLFDNCRSQSEQCWEMYLAEVISNPSAYRCLEEE-------TNDSSWTQ-STSPWY 268          
BLAST of mRNA_D-mesarthrocarpus_Contig10171.1.1 vs. uniprot
Match: A0A5D6XG87_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XG87_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.420e-9
Identity = 35/82 (42.68%), Postives = 50/82 (60.98%), Query Frame = 1
Query:   22 ILGQQLFSGVLHSRCRLTPYPVRLGECSSVYEDCWPQYLSNVSSSPEDWACLLEEGGGGAVENDDSSWTRRSDSPWFEAQVC 267
            ++G Q++SGVLH RCRLTPYPVRL    SV    +P+Y + V + P  +AC  +      V N+  +WT  S SPW + ++C
Sbjct:  261 VIGIQMWSGVLHPRCRLTPYPVRLDP--SVTLATFPEYQAMVLADPSLFACTDDSNSRIPVANE--TWTHES-SPWHKPRLC 337          
BLAST of mRNA_D-mesarthrocarpus_Contig10171.1.1 vs. uniprot
Match: A0A662XKN5_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XKN5_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 4.920e-9
Identity = 33/82 (40.24%), Postives = 48/82 (58.54%), Query Frame = 1
Query:   22 ILGQQLFSGVLHSRCRLTPYPVRLGECSSVYEDCWPQYLSNVSSSPEDWACLLEEGGGGAVENDDSSWTRRSDSPWFEAQVC 267
            ++G QL+SG +HSRCRL PYP+ L +     ED  P Y   V  +PE + CL +  G  A+E ++ +W+  S SPW   + C
Sbjct:  332 VIGVQLWSGGMHSRCRLAPYPLAL-DADLQLEDL-PAYQQQVLQTPELFRCLGDGAGATALETENDTWSHDS-SPWRTPRSC 410          
BLAST of mRNA_D-mesarthrocarpus_Contig10171.1.1 vs. uniprot
Match: G4YIT9_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YIT9_PHYSP)

HSP 1 Score: 61.2 bits (147), Expect = 6.690e-9
Identity = 34/89 (38.20%), Postives = 53/89 (59.55%), Query Frame = 1
Query:    1 FMLTVFSILGQQLFSGVLHSRCRLTPYPVRLGECSSVYEDCWPQYLSNVSSSPEDWACLLEEGGGGAVENDDSSWTRRSDSPWFEAQVC 267
            F+   + ++G QL+SG +HSRCRL+P+P+ L    S+ E   P Y   V ++PE + CL E+     ++ + +SWT  S SPW   +VC
Sbjct:  104 FLFFFYGVIGVQLYSGAMHSRCRLSPHPLALDPNISLKE--LPAYQEQVVAAPELFRCLDEDSL--PLQAEMNSWTHDS-SPWKTPRVC 187          
BLAST of mRNA_D-mesarthrocarpus_Contig10171.1.1 vs. uniprot
Match: A0A2D4CGZ7_PYTIN (Uncharacterized protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CGZ7_PYTIN)

HSP 1 Score: 61.2 bits (147), Expect = 6.720e-9
Identity = 35/82 (42.68%), Postives = 49/82 (59.76%), Query Frame = 1
Query:   22 ILGQQLFSGVLHSRCRLTPYPVRLGECSSVYEDCWPQYLSNVSSSPEDWACLLEEGGGGAVENDDSSWTRRSDSPWFEAQVC 267
            + G QL+SGVLHSRCRLTP+PV L    ++  +  P Y S V + P  + C  +      +E D+SSWT  + SPW + Q+C
Sbjct:  320 VTGVQLWSGVLHSRCRLTPFPVVLDP--NITLESLPDYQSRVVADPYTYRCR-DVKSLDVLELDNSSWTHDT-SPWRQPQLC 397          
BLAST of mRNA_D-mesarthrocarpus_Contig10171.1.1 vs. uniprot
Match: A0A6A3FWU6_9STRA (Uncharacterized protein n=5 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3FWU6_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 9.170e-9
Identity = 34/89 (38.20%), Postives = 51/89 (57.30%), Query Frame = 1
Query:    1 FMLTVFSILGQQLFSGVLHSRCRLTPYPVRLGECSSVYEDCWPQYLSNVSSSPEDWACLLEEGGGGAVENDDSSWTRRSDSPWFEAQVC 267
            F+   + ++G QL+SG +HSRCR++PYP+ L    S+ E   P Y   V ++PE + CL E      +E +  SW+  S SPW   +VC
Sbjct:  326 FLFFFYGVIGVQLWSGAMHSRCRMSPYPLALDPNLSLKE--LPAYQEQVVAAPELFRCLGENSL--PLEAETDSWSHDS-SPWKTPRVC 409          
BLAST of mRNA_D-mesarthrocarpus_Contig10171.1.1 vs. uniprot
Match: A0A662WQP6_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WQP6_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.250e-8
Identity = 33/82 (40.24%), Postives = 48/82 (58.54%), Query Frame = 1
Query:   22 ILGQQLFSGVLHSRCRLTPYPVRLGECSSVYEDCWPQYLSNVSSSPEDWACLLEEGGGGAVENDDSSWTRRSDSPWFEAQVC 267
            ++G QL+SG +HSRCRLTP+P+ L +     ED  P Y   V  +PE + CL +  G  A+E ++ +W+  S SPW     C
Sbjct:  391 VIGVQLWSGGMHSRCRLTPFPLAL-DADLQLEDL-PAYQQQVLQTPELFRCLGDGAGATALEIENDTWSHDS-SPWRTPHSC 469          
BLAST of mRNA_D-mesarthrocarpus_Contig10171.1.1 vs. uniprot
Match: A0A662XXG8_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XXG8_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.580e-8
Identity = 34/89 (38.20%), Postives = 52/89 (58.43%), Query Frame = 1
Query:    1 FMLTVFSILGQQLFSGVLHSRCRLTPYPVRLGECSSVYEDCWPQYLSNVSSSPEDWACLLEEGGGGAVENDDSSWTRRSDSPWFEAQVC 267
            F+  ++ I+G QL+SGVLH RCRLTP+P+RL   ++V  D +P Y S   ++   + C+ E      +    +SW+  S SPW   +VC
Sbjct:   34 FLFFLYGIIGVQLWSGVLHPRCRLTPWPLRLD--ANVTPDDFPAYQSMALANVSLYTCVDESNT--QIPLSQASWSHDS-SPWRTPRVC 117          
BLAST of mRNA_D-mesarthrocarpus_Contig10171.1.1 vs. uniprot
Match: F0WCG7_9STRA (Similar to sodium channel putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WCG7_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 3.200e-8
Identity = 37/96 (38.54%), Postives = 55/96 (57.29%), Query Frame = 1
Query:    1 FMLTVFSILGQQLFSGVLHSRCRLTPYPVRLG-ECSSVYEDCWP---QYLSNVSSSPEDWACLLEEGGGGAVENDDSS---WTRRSDSPWFEAQVC 267
            F+  +F ILG QLF G++ SRCRLTPYP+++  +    Y+  WP   +YL+ V S P  + CL E      + ++D S   +T+ + SPW   Q C
Sbjct:  264 FVFLIFGILGIQLFGGLMTSRCRLTPYPIKMPVDKDGTYQ--WPIPSEYLAKVISDPVTYQCLNEP----LLSHEDRSSRLYTKET-SPWRFPQDC 352          
BLAST of mRNA_D-mesarthrocarpus_Contig10171.1.1 vs. uniprot
Match: A0A5D6Y6M5_9STRA (WW domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y6M5_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 4.380e-8
Identity = 34/89 (38.20%), Postives = 50/89 (56.18%), Query Frame = 1
Query:    1 FMLTVFSILGQQLFSGVLHSRCRLTPYPVRLGECSSVYEDCWPQYLSNVSSSPEDWACLLEEGGGGAVENDDSSWTRRSDSPWFEAQVC 267
            F+  ++ ++G QL+SGV+HSRCRLTPYPV L    ++ +   P Y   V+ +     C  E      +  +D+SWT  S SPW   +VC
Sbjct:  325 FLFFLYGVIGVQLWSGVMHSRCRLTPYPVHLDPKLTLQD--LPAYQEFVTVNHPLHRCRDENDK--IISTEDASWTHDS-SPWRVPKVC 408          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10171.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A7S2PB29_9STRA3.290e-1650.59Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A5D6XG87_9STRA1.420e-942.68Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A662XKN5_9STRA4.920e-940.24Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
G4YIT9_PHYSP6.690e-938.20Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A2D4CGZ7_PYTIN6.720e-942.68Uncharacterized protein n=2 Tax=Pythium insidiosum... [more]
A0A6A3FWU6_9STRA9.170e-938.20Uncharacterized protein n=5 Tax=Phytophthora fraga... [more]
A0A662WQP6_9STRA1.250e-840.24Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A662XXG8_9STRA1.580e-838.20Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
F0WCG7_9STRA3.200e-838.54Similar to sodium channel putative n=1 Tax=Albugo ... [more]
A0A5D6Y6M5_9STRA4.380e-838.20WW domain-containing protein n=1 Tax=Pythium brass... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10171contigD-mesarthrocarpus_Contig10171:445..1659 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog42099.EPrPV00000022452
PFAMsIon_trans
Model size276
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.04e-09
EggNOG OGsKOG2301@1|root,KOG2301@2759|Eukaryota,1MJ9S@121069|Pythiales
DescriptionVoltage-gated Ion Channel (VIC) Superfamily. Source PGD
Cds size273
COG categoryPT
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789160.5980709-UTR-D-mesarthrocarpus_Contig10171:444..4471680789160.5980709-UTR-D-mesarthrocarpus_Contig10171:444..447Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10171 445..447 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789160.6079383-CDS-D-mesarthrocarpus_Contig10171:447..5061680789160.6079383-CDS-D-mesarthrocarpus_Contig10171:447..506Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10171 448..506 +
1680789160.6163461-CDS-D-mesarthrocarpus_Contig10171:1445..16591680789160.6163461-CDS-D-mesarthrocarpus_Contig10171:1445..1659Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10171 1446..1659 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10171.1.1prot_D-mesarthrocarpus_Contig10171.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10171 448..1659 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10171.1.1

>prot_D-mesarthrocarpus_Contig10171.1.1 ID=prot_D-mesarthrocarpus_Contig10171.1.1|Name=mRNA_D-mesarthrocarpus_Contig10171.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=91bp
MLTVFSILGQQLFSGVLHSRCRLTPYPVRLGECSSVYEDCWPQYLSNVSS
SPEDWACLLEEGGGGAVENDDSSWTRRSDSPWFEAQVCAM*
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mRNA from alignment at D-mesarthrocarpus_Contig10171:445..1659+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10171.1.1 ID=mRNA_D-mesarthrocarpus_Contig10171.1.1|Name=mRNA_D-mesarthrocarpus_Contig10171.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1215bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10171:445..1659+ (Discosporangium mesarthrocarpum MT17_79)
TTCATGCTCACGGTCTTCTCCATCCTGGGGCAGCAGCTCTTCAGTGGGGT TCTCCACTCGAGGTGCTCGTGGGGGGGTTAGGGTTAGGGTTAGGGTTAGG GTTAGGGTTAGGGTTCTCCACTCGAGGTGCTCGTGGGGGGGTTAGGGTTA GGATTAGGGTTAGGGTTCTCCACTCGATGTGCTCGTGGGGGGGACGTGCT GGCCATTAGGGTTAGGGTTAGGGTTAGGATTGTCAGTAGGATGGTTGTAG GAAGAAAAACAGGAGGCGTAAATTAAAAAATTGACATTCTCAAAACCTGG AAGAAGCCCTCGAAAGAAATACTTTCAAAGTACTAGGAAGAAATATCCAA GCCATATTTTCCCTCTTGAACTGTGCGATTCTTCTTTACTCTCCTTCAAT TCTTGCATGGACTAAATCTCCCACAGGCTGCAGGCAAAAAATACTATACT GAAGAGAATCGAGTAGGCTAAAACAAAATATGCAGACAGGAGGGAGGGGG GAGAGCTAGAATAACACTAACCCTGACCCTAACGCTAGCCCTAATCCTAA CCCTAAGCCCCATACAAATACTCACAGGGAAAGGAGACTTGTAGCACAGC AGGGGCAGACTGCTTGCCAGCCATTCAAGAAGCTAATCCAGAACCCAAAC ACCAACAAAAAAACTAACCCCAAACCTAATGCTAAGCCAAACCTCAATTT CAACCCTAACCCTAACCCCAACACTAACTCTTGCCCTGTTACCCTAGTCC TATATACCTAATAAGATAAATCGCTCGAACCCTTGAAATCCTAAAAGATC CCCATGTATCCCTGTACATCCCTATATACCGCTACATATCCCTAGATATC CCTAGATAACCCTAGATATCTCTAGATATCTCCCTATATGTCCCTATTTG TCCCTATATATCCCTATATACCCCTGCATATCCCTATATATCTCCCTGTA TGTCCCTATAAATCCCTATAAATCCCTACAAATACCTGTAAATCCCCCAA GGTGCCGGCTCACGCCATACCCCGTCCGCCTGGGGGAGTGCTCATCGGTG TATGAGGACTGCTGGCCCCAGTACCTCTCCAACGTTTCCTCCAGTCCCGA GGATTGGGCCTGCCTTCTGGAAGAGGGGGGGGGGGGCGCTGTGGAAAACG ACGATAGCTCCTGGACCCGGAGGTCGGACAGCCCCTGGTTTGAGGCGCAG GTGTGTGCCATGTAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10171:445..1659+

>mRNA_D-mesarthrocarpus_Contig10171.1.1 ID=mRNA_D-mesarthrocarpus_Contig10171.1.1|Name=mRNA_D-mesarthrocarpus_Contig10171.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=273bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10171:445..1659+ (Discosporangium mesarthrocarpum MT17_79)
ATGCTCACGGTCTTCTCCATCCTGGGGCAGCAGCTCTTCAGTGGGGTTCT
CCACTCGAGGTGCCGGCTCACGCCATACCCCGTCCGCCTGGGGGAGTGCT
CATCGGTGTATGAGGACTGCTGGCCCCAGTACCTCTCCAACGTTTCCTCC
AGTCCCGAGGATTGGGCCTGCCTTCTGGAAGAGGGGGGGGGGGGCGCTGT
GGAAAACGACGATAGCTCCTGGACCCGGAGGTCGGACAGCCCCTGGTTTG
AGGCGCAGGTGTGTGCCATGTAG
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