mRNA_D-mesarthrocarpus_Contig1017.6.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig1017.6.1
Unique NamemRNA_D-mesarthrocarpus_Contig1017.6.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1017.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig1017contigD-mesarthrocarpus_Contig1017:11267..12096 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size831
Hectar predicted targeting categorysignal peptide
Exons1
Cds size828
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789160.3285556-CDS-D-mesarthrocarpus_Contig1017:11268..120961680789160.3285556-CDS-D-mesarthrocarpus_Contig1017:11268..12096Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1017 11269..12096 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig1017.6.1prot_D-mesarthrocarpus_Contig1017.6.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig1017 11269..12096 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig1017.6.1

>prot_D-mesarthrocarpus_Contig1017.6.1 ID=prot_D-mesarthrocarpus_Contig1017.6.1|Name=mRNA_D-mesarthrocarpus_Contig1017.6.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=276bp
LIVAALTLFPSDSAVQEAGCWAVAALSTNNIQNSRALGALGACALVAAAM
EAFPWDRGVQERACGAVGGLACEDPTNISLLLKEGIPYLLAASLTMFPDN
ARVHRRACWAMANLSWDNSGAVQLAEAGACHLVSSALVAFPTHTGVQEEG
LGAVVNLAASSEENARLLGEAGACELVVSALTSFKSPQPGGGGRSNRLVA
KMALHAVERLASTIHPGYERLVAAGAPGAVVTALRAFPGDLALEKSGCEA
VATLAMLPLGAEALGREGACSQVVAV
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mRNA from alignment at D-mesarthrocarpus_Contig1017:11267..12096-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig1017.6.1 ID=mRNA_D-mesarthrocarpus_Contig1017.6.1|Name=mRNA_D-mesarthrocarpus_Contig1017.6.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=830bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1017:11267..12096- (Discosporangium mesarthrocarpum MT17_79)
CTCATCGTGGCAGCCCTGACCCTCTTCCCTTCCGATAGCGCGGTGCAGGA
GGCCGGGTGCTGGGCCGTGGCAGCCCTGAGCACCAATAACATCCAGAACT
CTAGAGCTCTGGGTGCCCTGGGCGCGTGCGCCCTGGTGGCGGCCGCGATG
GAGGCATTCCCGTGGGACCGCGGGGTGCAGGAGCGGGCCTGCGGGGCGGT
GGGGGGGCTCGCCTGCGAAGACCCTACCAACATCTCTCTCCTTCTCAAGG
AGGGCATACCCTACCTCCTGGCGGCTTCCCTCACCATGTTCCCGGACAAC
GCACGGGTGCATCGGAGAGCGTGCTGGGCAATGGCAAACCTGTCCTGGGA
CAACAGTGGGGCAGTGCAGCTGGCGGAGGCTGGGGCATGCCACCTCGTGT
CCTCGGCCCTGGTGGCCTTCCCCACCCACACCGGGGTCCAGGAGGAGGGT
CTAGGGGCAGTAGTCAACCTCGCTGCCAGCAGTGAGGAGAATGCAAGGCT
ACTAGGGGAGGCCGGGGCCTGTGAGCTCGTTGTCTCTGCCCTAACTTCCT
TCAAGTCTCCACAGCCCGGGGGGGGGGGCAGGAGCAACCGTCTGGTGGCC
AAAATGGCACTCCACGCAGTGGAGCGGCTTGCCTCCACCATCCACCCAGG
GTATGAGCGCCTTGTGGCAGCAGGAGCCCCTGGGGCAGTGGTCACCGCTC
TTAGAGCATTCCCTGGTGACCTGGCACTCGAGAAGTCTGGCTGTGAGGCT
GTCGCCACCCTCGCAATGCTACCCCTGGGCGCAGAGGCCCTGGGCCGTGA
GGGTGCCTGCTCCCAGGTGGTGGCTGTGCT
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1017:11267..12096-

>mRNA_D-mesarthrocarpus_Contig1017.6.1 ID=mRNA_D-mesarthrocarpus_Contig1017.6.1|Name=mRNA_D-mesarthrocarpus_Contig1017.6.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=828bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1017:11267..12096- (Discosporangium mesarthrocarpum MT17_79)
CTCATCGTGGCAGCCCTGACCCTCTTCCCTTCCGATAGCGCGGTGCAGGA
GGCCGGGTGCTGGGCCGTGGCAGCCCTGAGCACCAATAACATCCAGAACT
CTAGAGCTCTGGGTGCCCTGGGCGCGTGCGCCCTGGTGGCGGCCGCGATG
GAGGCATTCCCGTGGGACCGCGGGGTGCAGGAGCGGGCCTGCGGGGCGGT
GGGGGGGCTCGCCTGCGAAGACCCTACCAACATCTCTCTCCTTCTCAAGG
AGGGCATACCCTACCTCCTGGCGGCTTCCCTCACCATGTTCCCGGACAAC
GCACGGGTGCATCGGAGAGCGTGCTGGGCAATGGCAAACCTGTCCTGGGA
CAACAGTGGGGCAGTGCAGCTGGCGGAGGCTGGGGCATGCCACCTCGTGT
CCTCGGCCCTGGTGGCCTTCCCCACCCACACCGGGGTCCAGGAGGAGGGT
CTAGGGGCAGTAGTCAACCTCGCTGCCAGCAGTGAGGAGAATGCAAGGCT
ACTAGGGGAGGCCGGGGCCTGTGAGCTCGTTGTCTCTGCCCTAACTTCCT
TCAAGTCTCCACAGCCCGGGGGGGGGGGCAGGAGCAACCGTCTGGTGGCC
AAAATGGCACTCCACGCAGTGGAGCGGCTTGCCTCCACCATCCACCCAGG
GTATGAGCGCCTTGTGGCAGCAGGAGCCCCTGGGGCAGTGGTCACCGCTC
TTAGAGCATTCCCTGGTGACCTGGCACTCGAGAAGTCTGGCTGTGAGGCT
GTCGCCACCCTCGCAATGCTACCCCTGGGCGCAGAGGCCCTGGGCCGTGA
GGGTGCCTGCTCCCAGGTGGTGGCTGTG
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