mRNA_D-mesarthrocarpus_Contig1017.5.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig1017.5.1
Unique NamemRNA_D-mesarthrocarpus_Contig1017.5.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1017.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig1017contigD-mesarthrocarpus_Contig1017:9820..11251 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size666
Hectar predicted targeting categoryother localisation
Exons2
Cds size666
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789160.2108247-CDS-D-mesarthrocarpus_Contig1017:9819..99021680789160.2108247-CDS-D-mesarthrocarpus_Contig1017:9819..9902Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1017 9820..9902 -
1680789160.2215347-CDS-D-mesarthrocarpus_Contig1017:10668..112511680789160.2215347-CDS-D-mesarthrocarpus_Contig1017:10668..11251Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1017 10669..11251 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig1017.5.1prot_D-mesarthrocarpus_Contig1017.5.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig1017 9820..11251 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig1017.5.1

>prot_D-mesarthrocarpus_Contig1017.5.1 ID=prot_D-mesarthrocarpus_Contig1017.5.1|Name=mRNA_D-mesarthrocarpus_Contig1017.5.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=222bp
GRGTATRGASGHPQPGNRGSREPGEPGMPRGMRASLPGAGGAAPRRGGSG
GGMPGGDSTVKQQSSQCSAPRGSRGMSARVRGAQVLPRAAECAKVRLPGP
GSPGSGHRQCQGPGAARGVHNAALGHVHVPTGRPGAAEGGLGGCSQPCRQ
SSWELQDAEEGRRAGGSAAGHAGLPQVLPQPAGAREEGPPPHPAGLTWEG
HDSRYQQQWAWPSCGAHSRGG*
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mRNA from alignment at D-mesarthrocarpus_Contig1017:9820..11251-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig1017.5.1 ID=mRNA_D-mesarthrocarpus_Contig1017.5.1|Name=mRNA_D-mesarthrocarpus_Contig1017.5.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1432bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1017:9820..11251- (Discosporangium mesarthrocarpum MT17_79)
GGGCGGGGCACTGCAACGCGTGGGGCTTCGGGCCATCCGCAACCTGGCAA
CAGGGGCAGCAGGGAACCGGGAGAGCCTGGGATGCCACGGGGCATGCGAG
CGAGTCTCCCGGGCGCTGGAGGTGCTGCCCCTCGACGTGGGGGTTCAGGC
GGAGGCATGCCAGGTGGTGACAGCACTGTCAAGCAACAATCCAGCCAATG
CAGCGCGCCTCGGGGCAGCAGGGGCATGTCCGCTCGTGTTCGGGGTGCTC
AAGTCCTACCCAGGGCAGCTGAGTGTGCAAAAGTTCGCCTGCCAGGCCCT
GGCAGCCCTGGCAGTGGACACAGGCAATGCCAAGGCCCTGGGGCAGCTCG
GGGTGTGCACAATGCTGCCCTGGGTCATGTTCACGTTCCCACTGGAAGAC
CAGGGGCTGCAGAGGGCGGCCTTGGCGGCTGCAGCCAACCTTGCCGCCAG
TCATCCTGGGAACTCCAAGACGCTGAGGAGGGCCGGCGTGCGGGAGGCAG
TGCGGCGGGTCATGCAGGGCTCCCCCAAGTATTGCCGCAACCTGCAGGAG
CTCGGGAGGAGGGCCCTCCACCACACCCAGCAGGTCCGTGCATTGCTACG
GCATGCCCCCCTTGATCTTGTGATCTTGATTTCTGGGGAGGATGGGGTAG
GGGGTGGGCCCCTGCAGTGTGGGGCAGGGATCAGGCAGACGGATTACGAG
GGAGGGGAGGGATGGAGAGCAACAGATGCCCACAACATGAGTTTTTCTTC
TTGCGAGCTGGGCAGGAGCAGAGGGGCCATGGGATGGGAGGGGCTTCCAT
CTTGGGACATGCTCTGACCATGCCTTGTCCTAGTCTTCGCCTAAACACGC
CAGTGAATGGTGTTGAGCTCCCCCTGCAGTGTGTACAGTACAGTAGCTGC
AACTCATGCATCTCATACCAGCCCCAGGGCCACCTCCACCTCCGCCTTTG
CCTCCGGCCCTAAGAAATAGGAGATGAGAGGGGCCCCCGTTGCAGGAAGC
CAACACAATACCATGGCACGTTAGTATGGGTGCTATAATGTACCGTCTGT
ACCTCGTTGTTTGCCCCTACAACCCTAACCCTCAGATTCTGTAAAAAAAA
ATGCATGCTCCTAAGAGCTTTGAAGCGGTGGTGTATTTGGGGGGATTTGC
TACAACACATTACTGTACTGCACTGTAGTGCAGCAGTAGATTGTTCAAAG
TGAGGAAATACAAACATTATAAATGCATCTCTCCTCAAACAACCGACCAC
ATGGCCCCTGCACCACTCACACCCCTTCCTTTAAATGCCCCACACAACGC
CCCTTACCCCCCCCCCCCCCCTCTGCCGTGCCCTTAAAAGGGCCTGCAGG
CCTCACTTGGGAAGGGCACGACTCCCGTTACCAACAGCAGTGGGCCTGGC
CTTCCTGTGGAGCTCACTCAAGAGGCGGTTGA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1017:9820..11251-

>mRNA_D-mesarthrocarpus_Contig1017.5.1 ID=mRNA_D-mesarthrocarpus_Contig1017.5.1|Name=mRNA_D-mesarthrocarpus_Contig1017.5.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=666bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1017:9820..11251- (Discosporangium mesarthrocarpum MT17_79)
GGGCGGGGCACTGCAACGCGTGGGGCTTCGGGCCATCCGCAACCTGGCAA
CAGGGGCAGCAGGGAACCGGGAGAGCCTGGGATGCCACGGGGCATGCGAG
CGAGTCTCCCGGGCGCTGGAGGTGCTGCCCCTCGACGTGGGGGTTCAGGC
GGAGGCATGCCAGGTGGTGACAGCACTGTCAAGCAACAATCCAGCCAATG
CAGCGCGCCTCGGGGCAGCAGGGGCATGTCCGCTCGTGTTCGGGGTGCTC
AAGTCCTACCCAGGGCAGCTGAGTGTGCAAAAGTTCGCCTGCCAGGCCCT
GGCAGCCCTGGCAGTGGACACAGGCAATGCCAAGGCCCTGGGGCAGCTCG
GGGTGTGCACAATGCTGCCCTGGGTCATGTTCACGTTCCCACTGGAAGAC
CAGGGGCTGCAGAGGGCGGCCTTGGCGGCTGCAGCCAACCTTGCCGCCAG
TCATCCTGGGAACTCCAAGACGCTGAGGAGGGCCGGCGTGCGGGAGGCAG
TGCGGCGGGTCATGCAGGGCTCCCCCAAGTATTGCCGCAACCTGCAGGAG
CTCGGGAGGAGGGCCCTCCACCACACCCAGCAGGCCTCACTTGGGAAGGG
CACGACTCCCGTTACCAACAGCAGTGGGCCTGGCCTTCCTGTGGAGCTCA
CTCAAGAGGCGGTTGA
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