prot_D-mesarthrocarpus_Contig10169.1.1 (polypeptide) Discosporangium mesarthrocarpum MT17_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_D-mesarthrocarpus_Contig10169.1.1
Unique Nameprot_D-mesarthrocarpus_Contig10169.1.1
Typepolypeptide
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Sequence length59
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10169.1.1 vs. uniprot
Match: D8LG51_ECTSI (TrmE, organellal GTPase involved in tRNA modification n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG51_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 4.750e-15
Identity = 49/98 (50.00%), Postives = 53/98 (54.08%), Query Frame = 0
Query:    1 DTIFALATGNAGPAGVAVVRISGPCSGSVLQAMTT---------------------------------------PLPAPRRAVLRRLFDPRTGDLLDE 59
            DTIFALATGNAGPAGVAVVRISGP S  VLQA+T+                                       P PA RRAV+RRL+DP TGDLLDE
Sbjct:  196 DTIFALATGNAGPAGVAVVRISGPLSAQVLQALTSAANLSSVTAAEASAGGDAGVAASAAPAVVNGGGAGRRLPPFPAARRAVVRRLYDPATGDLLDE 293          
BLAST of mRNA_D-mesarthrocarpus_Contig10169.1.1 vs. uniprot
Match: A0A6H5K111_9PHAE (TrmE-type G domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K111_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 6.470e-15
Identity = 49/99 (49.49%), Postives = 53/99 (53.54%), Query Frame = 0
Query:    1 DTIFALATGNAGPAGVAVVRISGPCSGSVLQAMTT----------------------------------------PLPAPRRAVLRRLFDPRTGDLLDE 59
            DTIFALATGNAGPAGVAVVRISGP S  VLQA+T+                                        P PA RRAV+RRL+DP TGDLLDE
Sbjct:   32 DTIFALATGNAGPAGVAVVRISGPLSAQVLQALTSATTLSSATAAEASAGRDAGVAXXXXXXXXXXXXXAGRRLPPFPAARRAVVRRLYDPATGDLLDE 130          
BLAST of mRNA_D-mesarthrocarpus_Contig10169.1.1 vs. uniprot
Match: UPI00199C6C05 (tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=UPI00199C6C05)

HSP 1 Score: 68.9 bits (167), Expect = 7.270e-14
Identity = 36/59 (61.02%), Postives = 48/59 (81.36%), Query Frame = 0
Query:    1 DTIFALATGNAGPAGVAVVRISGPCSGSVLQAMTTPLPAPRRAVLRRLFDPRTGDLLDE 59
            DTI+A+++G AG AG+AVVR+SGP +G  + A+T  LPA RRAV+R+L DP TGDLLD+
Sbjct:    5 DTIYAVSSG-AGKAGIAVVRVSGPHAGKAMTALTGSLPASRRAVVRKLGDPATGDLLDQ 62          
BLAST of mRNA_D-mesarthrocarpus_Contig10169.1.1 vs. uniprot
Match: UPI000E708D77 (tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE n=1 Tax=Roseomonas vastitatis TaxID=2307076 RepID=UPI000E708D77)

HSP 1 Score: 67.0 bits (162), Expect = 1.550e-11
Identity = 37/59 (62.71%), Postives = 46/59 (77.97%), Query Frame = 0
Query:    1 DTIFALATGNAGPAGVAVVRISGPCSGSVLQAMTTPLPAPRRAVLRRLFDPRTGDLLDE 59
            DTIFALA+G AG A V+++R+SGP SG++L  +   LP PRRA LRRL DPR G+LLDE
Sbjct:    5 DTIFALASG-AGRAAVSLLRLSGPGSGAILARLAAGLPKPRRASLRRLRDPRDGELLDE 62          
BLAST of mRNA_D-mesarthrocarpus_Contig10169.1.1 vs. uniprot
Match: A0A836CK05_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK05_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.570e-11
Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 0
Query:    1 DTIFALATGNAGPAGVAVVRISGPCSGSVLQAMTTP------LPAPRRAVLRRLFDPRTGDLLDE 59
            DTIFAL++G AG AGVAV+R+SGP +G  L  + T       +P  RRA +RRL+DP  GDLLDE
Sbjct:    4 DTIFALSSGPAGQAGVAVIRVSGPAAGDALHTLITAPGRHAKMPEARRAAVRRLYDPVKGDLLDE 68          
BLAST of mRNA_D-mesarthrocarpus_Contig10169.1.1 vs. uniprot
Match: A0A1W7M6H9_9SPHN (tRNA modification GTPase MnmE n=5 Tax=unclassified Novosphingobium TaxID=2644732 RepID=A0A1W7M6H9_9SPHN)

HSP 1 Score: 66.6 bits (161), Expect = 2.120e-11
Identity = 37/58 (63.79%), Postives = 44/58 (75.86%), Query Frame = 0
Query:    1 DTIFALATGNAGPAGVAVVRISGPCSGSVLQAMTTPLPAPRRAVLRRLFDPRTGDLLD 58
            DTIFAL++G   PAG+AVVRISGP +G  L+A+   LPAPRRA L RL DPR G+ LD
Sbjct:    3 DTIFALSSGQP-PAGIAVVRISGPHAGECLRALAGKLPAPRRAALVRLIDPRDGNELD 59          
BLAST of mRNA_D-mesarthrocarpus_Contig10169.1.1 vs. uniprot
Match: UPI0018E05130 (tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE n=1 Tax=Roseomonas sp. OP-27 TaxID=2748667 RepID=UPI0018E05130)

HSP 1 Score: 64.7 bits (156), Expect = 1.020e-10
Identity = 37/59 (62.71%), Postives = 46/59 (77.97%), Query Frame = 0
Query:    1 DTIFALATGNAGPAGVAVVRISGPCSGSVLQAMTTPLPAPRRAVLRRLFDPRTGDLLDE 59
            DTIFALA+G AG A VAV+R+SG  SG+++ AM   LP PRRA LRRL DP +G++LDE
Sbjct:    5 DTIFALASG-AGRAAVAVLRVSGAQSGTIVAAMAGGLPHPRRASLRRLRDPASGEVLDE 62          
BLAST of mRNA_D-mesarthrocarpus_Contig10169.1.1 vs. uniprot
Match: UPI001C43B84E (tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE n=2 Tax=Elioraea tepida TaxID=2843330 RepID=UPI001C43B84E)

HSP 1 Score: 64.7 bits (156), Expect = 1.020e-10
Identity = 36/58 (62.07%), Postives = 44/58 (75.86%), Query Frame = 0
Query:    1 DTIFALATGNAGPAGVAVVRISGPCSGSVLQAMTTPLPAPRRAVLRRLFDPRTGDLLD 58
            DTIFALA+G+ G AGVAV+R+SGP     L A+   +P PRRAVLRRL  PRTG++LD
Sbjct:   13 DTIFALASGS-GRAGVAVIRLSGPAVPEALAALVGGVPEPRRAVLRRLRHPRTGEVLD 69          
BLAST of mRNA_D-mesarthrocarpus_Contig10169.1.1 vs. uniprot
Match: A0A6N9BGZ2_9PROT (tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A6N9BGZ2_9PROT)

HSP 1 Score: 64.3 bits (155), Expect = 1.160e-10
Identity = 36/58 (62.07%), Postives = 43/58 (74.14%), Query Frame = 0
Query:    1 DTIFALATGNAGPAGVAVVRISGPCSGSVLQAMTTPLPAPRRAVLRRLFDPRTGDLLD 58
            DTIFA AT   G AG+AV+R+SGP +G  L A+  PLP PRRAVLR + DP TG+LLD
Sbjct:    3 DTIFAEATAP-GRAGIAVLRLSGPEAGRALAALAGPLPEPRRAVLRAVRDPETGELLD 59          
BLAST of mRNA_D-mesarthrocarpus_Contig10169.1.1 vs. uniprot
Match: A0A259IDE4_9SPHN (tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE (Fragment) n=1 Tax=Sphingomonadales bacterium 39-62-4 TaxID=1970599 RepID=A0A259IDE4_9SPHN)

HSP 1 Score: 63.9 bits (154), Expect = 1.340e-10
Identity = 36/58 (62.07%), Postives = 43/58 (74.14%), Query Frame = 0
Query:    1 DTIFALATGNAGPAGVAVVRISGPCSGSVLQAMTTPLPAPRRAVLRRLFDPRTGDLLD 58
            DTIFAL++G   PAG+AV+RISGP SG+ L A+T  LPAPRRA L  L DP+ G  LD
Sbjct:    3 DTIFALSSGPP-PAGIAVIRISGPQSGTALTALTGKLPAPRRATLATLADPQDGTHLD 59          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10169.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LG51_ECTSI4.750e-1550.00TrmE, organellal GTPase involved in tRNA modificat... [more]
A0A6H5K111_9PHAE6.470e-1549.49TrmE-type G domain-containing protein n=1 Tax=Ecto... [more]
UPI00199C6C057.270e-1461.02tRNA uridine-5-carboxymethylaminomethyl(34) synthe... [more]
UPI000E708D771.550e-1162.71tRNA uridine-5-carboxymethylaminomethyl(34) synthe... [more]
A0A836CK05_9STRA1.570e-1155.38Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1W7M6H9_9SPHN2.120e-1163.79tRNA modification GTPase MnmE n=5 Tax=unclassified... [more]
UPI0018E051301.020e-1062.71tRNA uridine-5-carboxymethylaminomethyl(34) synthe... [more]
UPI001C43B84E1.020e-1062.07tRNA uridine-5-carboxymethylaminomethyl(34) synthe... [more]
A0A6N9BGZ2_9PROT1.160e-1062.07tRNA uridine-5-carboxymethylaminomethyl(34) synthe... [more]
A0A259IDE4_9SPHN1.340e-1062.07tRNA uridine-5-carboxymethylaminomethyl(34) synthe... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018948GTP-binding protein TrmE, N-terminalPFAMPF10396TrmE_Ncoord: 2..59
e-value: 6.2E-9
score: 36.2
IPR027266GTP-binding protein TrmE/Aminomethyltransferase GcvT, domain 1GENE3D3.30.1360.120Probable tRNA modification gtpase trme; domain 1coord: 1..59
e-value: 9.7E-13
score: 50.1
NoneNo IPR availableSUPERFAMILY103025Folate-binding domaincoord: 1..59

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10169contigD-mesarthrocarpus_Contig10169:3..233 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10169.1.1mRNA_D-mesarthrocarpus_Contig10169.1.1Discosporangium mesarthrocarpum MT17_79mRNAD-mesarthrocarpus_Contig10169 3..233 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_D-mesarthrocarpus_Contig10169.1.1 ID=prot_D-mesarthrocarpus_Contig10169.1.1|Name=mRNA_D-mesarthrocarpus_Contig10169.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=59bp
DTIFALATGNAGPAGVAVVRISGPCSGSVLQAMTTPLPAPRRAVLRRLFD
PRTGDLLDE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018948GTP-bd_TrmE_N
IPR027266TrmE/GcvT_dom1