mRNA_D-mesarthrocarpus_Contig10169.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10169.1.1 vs. uniprot
Match: D8LG51_ECTSI (TrmE, organellal GTPase involved in tRNA modification n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG51_ECTSI) HSP 1 Score: 77.0 bits (188), Expect = 4.750e-15 Identity = 49/98 (50.00%), Postives = 53/98 (54.08%), Query Frame = 1 Query: 1 DTIFALATGNAGPAGVAVVRISGPCSGSVLQAMTT---------------------------------------PLPAPRRAVLRRLFDPRTGDLLDE 177 DTIFALATGNAGPAGVAVVRISGP S VLQA+T+ P PA RRAV+RRL+DP TGDLLDE Sbjct: 196 DTIFALATGNAGPAGVAVVRISGPLSAQVLQALTSAANLSSVTAAEASAGGDAGVAASAAPAVVNGGGAGRRLPPFPAARRAVVRRLYDPATGDLLDE 293
BLAST of mRNA_D-mesarthrocarpus_Contig10169.1.1 vs. uniprot
Match: A0A6H5K111_9PHAE (TrmE-type G domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K111_9PHAE) HSP 1 Score: 76.6 bits (187), Expect = 6.470e-15 Identity = 49/99 (49.49%), Postives = 53/99 (53.54%), Query Frame = 1 Query: 1 DTIFALATGNAGPAGVAVVRISGPCSGSVLQAMTT----------------------------------------PLPAPRRAVLRRLFDPRTGDLLDE 177 DTIFALATGNAGPAGVAVVRISGP S VLQA+T+ P PA RRAV+RRL+DP TGDLLDE Sbjct: 32 DTIFALATGNAGPAGVAVVRISGPLSAQVLQALTSATTLSSATAAEASAGRDAGVAXXXXXXXXXXXXXAGRRLPPFPAARRAVVRRLYDPATGDLLDE 130
BLAST of mRNA_D-mesarthrocarpus_Contig10169.1.1 vs. uniprot
Match: UPI00199C6C05 (tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=UPI00199C6C05) HSP 1 Score: 68.9 bits (167), Expect = 7.270e-14 Identity = 36/59 (61.02%), Postives = 48/59 (81.36%), Query Frame = 1 Query: 1 DTIFALATGNAGPAGVAVVRISGPCSGSVLQAMTTPLPAPRRAVLRRLFDPRTGDLLDE 177 DTI+A+++G AG AG+AVVR+SGP +G + A+T LPA RRAV+R+L DP TGDLLD+ Sbjct: 5 DTIYAVSSG-AGKAGIAVVRVSGPHAGKAMTALTGSLPASRRAVVRKLGDPATGDLLDQ 62
BLAST of mRNA_D-mesarthrocarpus_Contig10169.1.1 vs. uniprot
Match: A0A7G5IH82_9SPHN (tRNA modification GTPase MnmE n=1 Tax=Sandaracinobacter sp. M6 TaxID=2759707 RepID=A0A7G5IH82_9SPHN) HSP 1 Score: 67.0 bits (162), Expect = 1.550e-11 Identity = 37/59 (62.71%), Postives = 44/59 (74.58%), Query Frame = 1 Query: 1 DTIFALATGNAGPAGVAVVRISGPCSGSVLQAMTT-PLPAPRRAVLRRLFDPRTGDLLD 174 TIFAL +G PAGVA++R+SGP +G L+A+T PLPAPR LRRL DPRTG LLD Sbjct: 2 STIFALGSGTP-PAGVALIRLSGPAAGPTLKALTNRPLPAPRHTSLRRLHDPRTGTLLD 59
BLAST of mRNA_D-mesarthrocarpus_Contig10169.1.1 vs. uniprot
Match: UPI000E708D77 (tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE n=1 Tax=Roseomonas vastitatis TaxID=2307076 RepID=UPI000E708D77) HSP 1 Score: 67.0 bits (162), Expect = 1.550e-11 Identity = 37/59 (62.71%), Postives = 46/59 (77.97%), Query Frame = 1 Query: 1 DTIFALATGNAGPAGVAVVRISGPCSGSVLQAMTTPLPAPRRAVLRRLFDPRTGDLLDE 177 DTIFALA+G AG A V+++R+SGP SG++L + LP PRRA LRRL DPR G+LLDE Sbjct: 5 DTIFALASG-AGRAAVSLLRLSGPGSGAILARLAAGLPKPRRASLRRLRDPRDGELLDE 62
BLAST of mRNA_D-mesarthrocarpus_Contig10169.1.1 vs. uniprot
Match: A0A836CK05_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK05_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 1.570e-11 Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 1 Query: 1 DTIFALATGNAGPAGVAVVRISGPCSGSVLQAMTTP------LPAPRRAVLRRLFDPRTGDLLDE 177 DTIFAL++G AG AGVAV+R+SGP +G L + T +P RRA +RRL+DP GDLLDE Sbjct: 4 DTIFALSSGPAGQAGVAVIRVSGPAAGDALHTLITAPGRHAKMPEARRAAVRRLYDPVKGDLLDE 68
BLAST of mRNA_D-mesarthrocarpus_Contig10169.1.1 vs. uniprot
Match: A0A1W7M6H9_9SPHN (tRNA modification GTPase MnmE n=5 Tax=unclassified Novosphingobium TaxID=2644732 RepID=A0A1W7M6H9_9SPHN) HSP 1 Score: 66.6 bits (161), Expect = 2.120e-11 Identity = 37/58 (63.79%), Postives = 44/58 (75.86%), Query Frame = 1 Query: 1 DTIFALATGNAGPAGVAVVRISGPCSGSVLQAMTTPLPAPRRAVLRRLFDPRTGDLLD 174 DTIFAL++G PAG+AVVRISGP +G L+A+ LPAPRRA L RL DPR G+ LD Sbjct: 3 DTIFALSSGQP-PAGIAVVRISGPHAGECLRALAGKLPAPRRAALVRLIDPRDGNELD 59
BLAST of mRNA_D-mesarthrocarpus_Contig10169.1.1 vs. uniprot
Match: A0A437MBJ1_9SPHN (tRNA modification GTPase MnmE n=1 Tax=Sphingomonas crocodyli TaxID=1979270 RepID=A0A437MBJ1_9SPHN) HSP 1 Score: 65.1 bits (157), Expect = 7.400e-11 Identity = 38/59 (64.41%), Postives = 44/59 (74.58%), Query Frame = 1 Query: 4 TIFALATGNAGPAGVAVVRISGPCSGSVLQAMTT-PLPAPRRAVLRRLFDPRTGDLLDE 177 TIFAL++G PAG+ VVRISGP +G V+ A+T PLP PRRA LR L DPR G LLDE Sbjct: 4 TIFALSSGMP-PAGIGVVRISGPQAGDVIAALTARPLPQPRRATLRPLIDPRDGRLLDE 61
BLAST of mRNA_D-mesarthrocarpus_Contig10169.1.1 vs. uniprot
Match: UPI0018E05130 (tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE n=1 Tax=Roseomonas sp. OP-27 TaxID=2748667 RepID=UPI0018E05130) HSP 1 Score: 64.7 bits (156), Expect = 1.020e-10 Identity = 37/59 (62.71%), Postives = 46/59 (77.97%), Query Frame = 1 Query: 1 DTIFALATGNAGPAGVAVVRISGPCSGSVLQAMTTPLPAPRRAVLRRLFDPRTGDLLDE 177 DTIFALA+G AG A VAV+R+SG SG+++ AM LP PRRA LRRL DP +G++LDE Sbjct: 5 DTIFALASG-AGRAAVAVLRVSGAQSGTIVAAMAGGLPHPRRASLRRLRDPASGEVLDE 62
BLAST of mRNA_D-mesarthrocarpus_Contig10169.1.1 vs. uniprot
Match: UPI001C43B84E (tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE n=2 Tax=Elioraea tepida TaxID=2843330 RepID=UPI001C43B84E) HSP 1 Score: 64.7 bits (156), Expect = 1.020e-10 Identity = 36/58 (62.07%), Postives = 44/58 (75.86%), Query Frame = 1 Query: 1 DTIFALATGNAGPAGVAVVRISGPCSGSVLQAMTTPLPAPRRAVLRRLFDPRTGDLLD 174 DTIFALA+G+ G AGVAV+R+SGP L A+ +P PRRAVLRRL PRTG++LD Sbjct: 13 DTIFALASGS-GRAGVAVIRLSGPAVPEALAALVGGVPEPRRAVLRRLRHPRTGEVLD 69 The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10169.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_D-mesarthrocarpus_Contig10169.1.1 >prot_D-mesarthrocarpus_Contig10169.1.1 ID=prot_D-mesarthrocarpus_Contig10169.1.1|Name=mRNA_D-mesarthrocarpus_Contig10169.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=59bp DTIFALATGNAGPAGVAVVRISGPCSGSVLQAMTTPLPAPRRAVLRRLFDback to top mRNA from alignment at D-mesarthrocarpus_Contig10169:3..233- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_D-mesarthrocarpus_Contig10169.1.1 ID=mRNA_D-mesarthrocarpus_Contig10169.1.1|Name=mRNA_D-mesarthrocarpus_Contig10169.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=231bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10169:3..233- (Discosporangium mesarthrocarpum MT17_79)back to top Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10169:3..233- >mRNA_D-mesarthrocarpus_Contig10169.1.1 ID=mRNA_D-mesarthrocarpus_Contig10169.1.1|Name=mRNA_D-mesarthrocarpus_Contig10169.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=177bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10169:3..233- (Discosporangium mesarthrocarpum MT17_79)back to top |