mRNA_D-mesarthrocarpus_Contig10168.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10168.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10168.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10168.1.1 vs. uniprot
Match: A0A2N9IJX2_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IJX2_FAGSY)

HSP 1 Score: 64.3 bits (155), Expect = 9.580e-9
Identity = 42/107 (39.25%), Postives = 59/107 (55.14%), Query Frame = 1
Query:   19 TFTRPDLAFAVMRISRFTSTINEHKSTTTHFSAAKRLLRYLKGSMVQSLQYHKGRLELKGFADASCNQEWS-------VHLVLHLPSSGNSNFMVVKASASCGTIHY 318
            TFTRPDL+FAV ++ +F      H  T TH  AAKR+LRY+KGS+   L +  G L L+ +ADA    +W+       +HL L      +S+ + VK +  C  I Y
Sbjct:  248 TFTRPDLSFAVNQVCQFM-----HSPTDTHLIAAKRILRYIKGSLSSGLLFQPGSLNLQAYADA----DWAGDPTRSPIHLWLRCFLGLHSHHLGVKETMHCLPILY 345          
BLAST of mRNA_D-mesarthrocarpus_Contig10168.1.1 vs. uniprot
Match: A0A2P6U5I4_CHLSO (Gag-Pol poly n=2 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6U5I4_CHLSO)

HSP 1 Score: 63.5 bits (153), Expect = 9.630e-9
Identity = 33/69 (47.83%), Postives = 47/69 (68.12%), Query Frame = 2
Query:  230 RSISCYIFPLAGTAISWSSKLQPVVAQSTTEAEYNPLGDTAKKGMYLDSFITKLEPFKMEIITIHEDKQ 436
            RS + Y+F L G+AISWSS+LQP VA STTEAEY       K+G++L + ++ L   +++ ITI+ D Q
Sbjct:  109 RSTTGYVFILGGSAISWSSRLQPTVAASTTEAEYMAAAYAIKEGLWLRTLLSDLG-MRLDTITINADNQ 176          
BLAST of mRNA_D-mesarthrocarpus_Contig10168.1.1 vs. uniprot
Match: A0A1S4E1E5_CUCME (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Cucumis melo TaxID=3656 RepID=A0A1S4E1E5_CUCME)

HSP 1 Score: 63.9 bits (154), Expect = 1.200e-8
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = 1
Query:    1 SFTYLFTFTRPDLAFAVMRISRFTSTINEHKSTTTHFSAAKRLLRYLKGSMVQSLQYHKGRLELKGFADASCNQEWS 231
            S  YL TFTRPD+AF+V R+S+F      HK T  HFSA KR+LRYL+G++   +++ KG   L+ F    C+ +W+
Sbjct:  220 SLQYL-TFTRPDIAFSVNRVSQFM-----HKPTIIHFSAVKRILRYLRGTLTFGIKFRKGSFSLQTF----CDSDWA 286          
BLAST of mRNA_D-mesarthrocarpus_Contig10168.1.1 vs. uniprot
Match: A0A2K3KSE5_TRIPR (Uncharacterized protein n=2 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3KSE5_TRIPR)

HSP 1 Score: 61.6 bits (148), Expect = 1.550e-8
Identity = 32/83 (38.55%), Postives = 49/83 (59.04%), Query Frame = 2
Query:  182 GWNSKDLQMQAVTRSGRSISCYIFPLAGTAISWSSKLQPVVAQSTTEAEYNPLGDTAKKGMYLDSFITKLEPFKMEIITIHED 430
            GW+  D       R  RS S Y+F +   A+SWSSK QP+V  STTEAE+     +A +G++L   +T+++  + + ITI+ D
Sbjct:   64 GWSDSDYASDIDDR--RSTSGYVFMIGTKAVSWSSKKQPIVTLSTTEAEFIAAASSACQGIWLSRILTQIDAREKDCITIYCD 144          
BLAST of mRNA_D-mesarthrocarpus_Contig10168.1.1 vs. uniprot
Match: A0A5D3DUH6_CUCME (Putative mitochondrial protein n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3DUH6_CUCME)

HSP 1 Score: 63.9 bits (154), Expect = 1.560e-8
Identity = 35/77 (45.45%), Postives = 49/77 (63.64%), Query Frame = 1
Query:    1 SFTYLFTFTRPDLAFAVMRISRFTSTINEHKSTTTHFSAAKRLLRYLKGSMVQSLQYHKGRLELKGFADASCNQEWS 231
            S  YL TFTRPD+AF++ R+S+F      HK T  HFSA KR+LRYL+G+    +++ KG   L+ F    C+ EW+
Sbjct:  230 SLQYL-TFTRPDIAFSINRVSQFM-----HKPTVIHFSAVKRILRYLRGTPTLGIKFRKGSFSLQTF----CDSEWA 296          
BLAST of mRNA_D-mesarthrocarpus_Contig10168.1.1 vs. uniprot
Match: A0A2N9HGA9_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HGA9_FAGSY)

HSP 1 Score: 61.6 bits (148), Expect = 1.750e-8
Identity = 32/64 (50.00%), Postives = 43/64 (67.19%), Query Frame = 1
Query:   19 TFTRPDLAFAVMRISRFTSTINEHKSTTTHFSAAKRLLRYLKGSMVQSLQYHKGRLELKGFADA 210
            TFTRPD+ FAV R+ +F      HK T+THF AAKR+LR+LKG++ + + +  G L L  F DA
Sbjct:   42 TFTRPDITFAVNRVCQFM-----HKPTSTHFMAAKRILRFLKGTLDKGILFQPGPLTLTAFTDA 100          
BLAST of mRNA_D-mesarthrocarpus_Contig10168.1.1 vs. uniprot
Match: A0A1Y1K7I6_PHOPY (Uncharacterized protein (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1K7I6_PHOPY)

HSP 1 Score: 59.7 bits (143), Expect = 2.110e-8
Identity = 34/72 (47.22%), Postives = 46/72 (63.89%), Query Frame = 1
Query:   28 RPDLAFAVMRISRFTSTINEHKSTTTHFSAAKRLLRYLKGSMVQSLQYHKGRLELKGFADASCNQEWSVHLV 243
            RPD+ F+V  +S+F +       T THF  AKR+LRYLKG++ QSL Y KG L +KGF DA    +W  +L+
Sbjct:   10 RPDIPFSVSYLSQFNTCY-----TNTHFQHAKRILRYLKGTIDQSLIYKKGDLGIKGFCDA----DWGNNLI 72          
BLAST of mRNA_D-mesarthrocarpus_Contig10168.1.1 vs. uniprot
Match: A0A151SEE7_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SEE7_CAJCA)

HSP 1 Score: 61.2 bits (147), Expect = 2.600e-8
Identity = 29/54 (53.70%), Postives = 37/54 (68.52%), Query Frame = 2
Query:  230 RSISCYIFPLAGTAISWSSKLQPVVAQSTTEAEYNPLGDTAKKGMYLDSFITKL 391
            RS++CYIF L G A+SW + LQP+VA STT+AEY  L +  KKG+ L   I  L
Sbjct:   40 RSLTCYIFTLYGCAVSWKATLQPIVALSTTKAEYMSLTEGVKKGICLQGLIDSL 93          
BLAST of mRNA_D-mesarthrocarpus_Contig10168.1.1 vs. uniprot
Match: A0A2X0MHJ4_9BASI (BQ5605_C011g06287 protein n=1 Tax=Microbotryum silenes-dioicae TaxID=796604 RepID=A0A2X0MHJ4_9BASI)

HSP 1 Score: 63.2 bits (152), Expect = 3.870e-8
Identity = 38/83 (45.78%), Postives = 50/83 (60.24%), Query Frame = 2
Query:  161 HYSTTR------EGWNSKDLQMQAVTRSGRSISCYIFPLAGTAISWSSKLQPVVAQSTTEAEYNPLGDTAKKGMYLDSFITKL 391
            HY+ T       EG++  D  +   T   RS   Y+F LAG AISWSS+LQP VA S+TEAEY  L   AK+ ++L S +T+L
Sbjct: 2644 HYTRTSAPLLGYEGYSDSDWGLDIQT--SRSTMGYLFKLAGGAISWSSRLQPRVACSSTEAEYLGLSHAAKEAVFLRSLLTEL 2724          
BLAST of mRNA_D-mesarthrocarpus_Contig10168.1.1 vs. uniprot
Match: A0A2P6U5G8_CHLSO (Retrovirus-related Pol poly from transposon TNT 1-94 isoform A n=2 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6U5G8_CHLSO)

HSP 1 Score: 62.8 bits (151), Expect = 4.840e-8
Identity = 33/69 (47.83%), Postives = 46/69 (66.67%), Query Frame = 2
Query:  230 RSISCYIFPLAGTAISWSSKLQPVVAQSTTEAEYNPLGDTAKKGMYLDSFITKLEPFKMEIITIHEDKQ 436
            RS + Y+F L G AISWSS+LQP VA STTEAEY       K+G++L + ++ L   +++ ITI+ D Q
Sbjct:  983 RSTTGYVFMLGGGAISWSSRLQPTVAASTTEAEYMAAAYAIKEGLWLRTLLSDLG-MRLDTITINADNQ 1050          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10168.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2N9IJX2_FAGSY9.580e-939.25Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2P6U5I4_CHLSO9.630e-947.83Gag-Pol poly n=2 Tax=Chlorella sorokiniana TaxID=3... [more]
A0A1S4E1E5_CUCME1.200e-845.45uncharacterized mitochondrial protein AtMg00810-li... [more]
A0A2K3KSE5_TRIPR1.550e-838.55Uncharacterized protein n=2 Tax=Trifolium pratense... [more]
A0A5D3DUH6_CUCME1.560e-845.45Putative mitochondrial protein n=1 Tax=Cucumis mel... [more]
A0A2N9HGA9_FAGSY1.750e-850.00Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A1Y1K7I6_PHOPY2.110e-847.22Uncharacterized protein (Fragment) n=1 Tax=Photinu... [more]
A0A151SEE7_CAJCA2.600e-853.70Retrovirus-related Pol polyprotein from transposon... [more]
A0A2X0MHJ4_9BASI3.870e-845.78BQ5605_C011g06287 protein n=1 Tax=Microbotryum sil... [more]
A0A2P6U5G8_CHLSO4.840e-847.83Retrovirus-related Pol poly from transposon TNT 1-... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10168contigD-mesarthrocarpus_Contig10168:3479..4342 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog221103.XP_007858443.1
Model size596
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.34e-09
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38IC9@33154|Opisthokonta,3PK9F@4751|Fungi,3V9V6@5204|Basidiomycota,22CUJ@155619|Agaricomycetes
Descriptiontransposition, RNA-mediated
Cds size390
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789160.102991-UTR-D-mesarthrocarpus_Contig10168:3478..35501680789160.102991-UTR-D-mesarthrocarpus_Contig10168:3478..3550Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10168 3479..3550 +
1680789160.117081-UTR-D-mesarthrocarpus_Contig10168:3819..39521680789160.117081-UTR-D-mesarthrocarpus_Contig10168:3819..3952Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10168 3820..3952 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789160.1310127-CDS-D-mesarthrocarpus_Contig10168:3952..43421680789160.1310127-CDS-D-mesarthrocarpus_Contig10168:3952..4342Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10168 3953..4342 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10168.1.1prot_D-mesarthrocarpus_Contig10168.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10168 3953..4342 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10168.1.1

>prot_D-mesarthrocarpus_Contig10168.1.1 ID=prot_D-mesarthrocarpus_Contig10168.1.1|Name=mRNA_D-mesarthrocarpus_Contig10168.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=130bp
MQAVTRSGRSISCYIFPLAGTAISWSSKLQPVVAQSTTEAEYNPLGDTAK
KGMYLDSFITKLEPFKMEIITIHEDKQHGSFSSGFQHLLGQDQAHPRSVS
LSEAARPRGGNTYQARGELGAARRHPDQAS
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mRNA from alignment at D-mesarthrocarpus_Contig10168:3479..4342+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10168.1.1 ID=mRNA_D-mesarthrocarpus_Contig10168.1.1|Name=mRNA_D-mesarthrocarpus_Contig10168.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=864bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10168:3479..4342+ (Discosporangium mesarthrocarpum MT17_79)
TCATTTACTTACTTGTTCACCTTCACCAGGCCTGACTTAGCGTTTGCCGT GATGCGGATATCACGCTTTACGGTCAAACTGTTCATGATATTCGGAGCTG TGGGCTCTTTCTTTCAAGAGCCTCAACACAGAAGATATTCGAGTAATGCA TATTAAGTTGAGTGAGAGGAAACACCAAGTCGGGGCCTTGACAAACAGCA AACAACCCACAAATACTAGGACGATCACTAATACTGGAACAGAATACCTG AACTTGAACATAACCCATCATATCCAGAACAAATCGGAACGACCGCTGAT ACGGATCGTTCTACAGTGCCTTAACAATTTCATTTATATAGAGCACCATC AACGAACACAAATCAACCACTACTCATTTCTCTGCTGCTAAACGACTTCT GAGGTATCTAAAGGGGAGCATGGTGCAATCATTACAGTACCACAAGGGAA GGCTGGAACTCAAAGGATTTGCAGATGCAAGCTGTAACCAGGAGTGGTCG GTCCATCTCGTGTTACATCTTCCCTCTAGCGGGAACAGCAATTTCATGGT CGTCAAAGCTTCAGCCAGTTGTGGCACAATCCACTACGGAGGCAGAATAC AATCCTCTTGGAGACACAGCCAAGAAAGGAATGTACCTGGACAGCTTCAT CACGAAACTGGAGCCATTCAAGATGGAAATAATCACCATCCATGAGGACA AACAACATGGGAGCTTTTCATCTGGCTTCCAACATCTTCTCGGCCAAGAC CAAGCACATCCACGTTCGGTATCACTTTCTGAAGCAGCTAGACCAAGAGG AGGAAATACATATCAAGCACGTGGCGAGCTCGGAGCAGCTCGCAGACATC CTGACCAAGCCTCT
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10168:3479..4342+

>mRNA_D-mesarthrocarpus_Contig10168.1.1 ID=mRNA_D-mesarthrocarpus_Contig10168.1.1|Name=mRNA_D-mesarthrocarpus_Contig10168.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=390bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10168:3479..4342+ (Discosporangium mesarthrocarpum MT17_79)
ATGCAAGCTGTAACCAGGAGTGGTCGGTCCATCTCGTGTTACATCTTCCC
TCTAGCGGGAACAGCAATTTCATGGTCGTCAAAGCTTCAGCCAGTTGTGG
CACAATCCACTACGGAGGCAGAATACAATCCTCTTGGAGACACAGCCAAG
AAAGGAATGTACCTGGACAGCTTCATCACGAAACTGGAGCCATTCAAGAT
GGAAATAATCACCATCCATGAGGACAAACAACATGGGAGCTTTTCATCTG
GCTTCCAACATCTTCTCGGCCAAGACCAAGCACATCCACGTTCGGTATCA
CTTTCTGAAGCAGCTAGACCAAGAGGAGGAAATACATATCAAGCACGTGG
CGAGCTCGGAGCAGCTCGCAGACATCCTGACCAAGCCTCT
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