mRNA_D-mesarthrocarpus_Contig10163.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10163.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10163.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10163.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10163contigD-mesarthrocarpus_Contig10163:715..1856 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size260
Hectar predicted targeting categoryother localisation
Exons2
Cds size252
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789159.9275649-CDS-D-mesarthrocarpus_Contig10163:714..7951680789159.9275649-CDS-D-mesarthrocarpus_Contig10163:714..795Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10163 715..795 -
1680789159.9367568-CDS-D-mesarthrocarpus_Contig10163:1678..18491680789159.9367568-CDS-D-mesarthrocarpus_Contig10163:1678..1849Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10163 1679..1849 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789159.945513-UTR-D-mesarthrocarpus_Contig10163:1849..18561680789159.945513-UTR-D-mesarthrocarpus_Contig10163:1849..1856Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10163 1850..1856 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10163.1.1prot_D-mesarthrocarpus_Contig10163.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10163 715..1849 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10163.1.1

>prot_D-mesarthrocarpus_Contig10163.1.1 ID=prot_D-mesarthrocarpus_Contig10163.1.1|Name=mRNA_D-mesarthrocarpus_Contig10163.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=84bp
MGTELQKQSDDLCCTMAFDPRGRSGESAGLQPSSPLQRWMLDAESLYLDG
RFSACQEFLRQTPPPLPVAQGAAAPQQPSMSLPP
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mRNA from alignment at D-mesarthrocarpus_Contig10163:715..1856-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10163.1.1 ID=mRNA_D-mesarthrocarpus_Contig10163.1.1|Name=mRNA_D-mesarthrocarpus_Contig10163.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1142bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10163:715..1856- (Discosporangium mesarthrocarpum MT17_79)
ATTGAGAATGGGGACGGAGCTTCAGAAGCAAAGTGATGACCTTTGCTGCA
CGATGGCCTTCGATCCCAGAGGTAGATCTGGGGAGTCGGCAGGATTACAA
CCTTCGTCTCCGCTGCAGCGGTGGATGTTGGACGCGGAGAGTCTCTACCT
CGACGGGAGATTCAGTGCTTGCCAGGAGGTGAGAGACAATGGTAGCCGAA
GCGGGCTTCTCATCTCTGTTGGGATCTCAAGATGTTTGTTTTGCAGCCTA
ATGCACGTTTGAACCTGTTGGACTTGGGTTGTGTCTTCTTTGAGCAGCGC
CTGAAGATACGCTTGAGATCATGATCACATTACTGTCAATAACAGTACTT
GATGTCCTTGTGGACATATTATCGGATGTAAGATGTTGCCTCAATGTCCA
TACCAGATGAACTTACTGTGACGGGGGCTCCTAAGGCATGTATTCGTGCG
TACCAACTTGCGTGCTTGTTTCCTCGTCAACCTTGATGTGCTTGAGGAAG
CCTTCATAAGCATGAGACTTGCCACCTGTATTGGTAACGACCGCCTATGT
AACTGTGCAACTTCCACGGGAATTCTTTACGGTAATTACAACTAATTCCT
ATCTTCGTACACACCAAGCCGCATGAACCGCCAGTTGCCAGAGACGCCCC
CTTCCTAGCGATCCGGTAGCGGTACTCCTATCGAAGGATGAAACCACAAG
GTGAGCAGAGGCAGGATCCGACAAAAGGAGGGTAGACCTGACCGAAATCA
TTTGCATAATCCCCCCGTTCCAGCTGGCTGGACCTCTTCTCCGAACCTCG
GGACGCGTATATATCAAACGCCATCACCCCTTATGCCACCCACCCTCCCC
CACCAACCGTAACCCTAAAACCATTGACTCCATTACCTTTCACATCGCCA
ACCCTAACCCTCAACCCTCAACCCTCAAAGCCTACCCCCTCTCTTGTCAT
CCCTGCCCCTACCCCTGCCCCTACCCCTGCTCCTACCCTTACCCCTGGCC
CTGGCTCTGGCCCTGCCCCTGCCCCTGCCCCCGTATACCCGATCTGCCCT
CGCTGTTGCAGTTCCTGCGTCAAACTCCACCACCCCTTCCAGTAGCACAG
GGAGCGGCAGCACCCCAACAACCGTCAATGTCACTGCCGCCT
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10163:715..1856-

>mRNA_D-mesarthrocarpus_Contig10163.1.1 ID=mRNA_D-mesarthrocarpus_Contig10163.1.1|Name=mRNA_D-mesarthrocarpus_Contig10163.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=252bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10163:715..1856- (Discosporangium mesarthrocarpum MT17_79)
ATGGGGACGGAGCTTCAGAAGCAAAGTGATGACCTTTGCTGCACGATGGC
CTTCGATCCCAGAGGTAGATCTGGGGAGTCGGCAGGATTACAACCTTCGT
CTCCGCTGCAGCGGTGGATGTTGGACGCGGAGAGTCTCTACCTCGACGGG
AGATTCAGTGCTTGCCAGGAGTTCCTGCGTCAAACTCCACCACCCCTTCC
AGTAGCACAGGGAGCGGCAGCACCCCAACAACCGTCAATGTCACTGCCGC
CT
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