mRNA_D-mesarthrocarpus_Contig10160.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10160.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10160.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10160.1.1 vs. uniprot
Match: D7G2U2_ECTSI (UBA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2U2_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 8.210e-33
Identity = 89/231 (38.53%), Postives = 121/231 (52.38%), Query Frame = 1 
Query:    1 RAGSVHGVTRYHTAHGWISEHVRGSGRQPLVEVVAVGLRGEGENWPEGLTQDC-------------DKALQTPSRRRHVLGMRHAGSKALARTHVCMKQLMTSFSRVLLGQYPRPSHREEGVHPLSVHAYAISSFIGEALLSALCDGV----GESGRVGGGRLPP----EAHCMHLGGVLELALCALFDERKGVLNTLLLSQMKNKGTPLRLLLDACVFVLKAALDMAGGP 630
            RA +  GV RY T HGWISEH RG+GRQP+VE+++VGL G+G    E  T+               ++ +Q   RRR V G+R  G  +LAR H   KQL+T+F+RVL G  PRP HRE+    ++  A A+  F+ E+L      G+    G     G  + PP    E H       LE   CA            LL +M+ +G PLR LL+AC ++  +AL+MA GP
Sbjct:  234 RAANSAGVMRYRTRHGWISEHARGTGRQPIVEILSVGLTGQGGEPSEEETEXXXXXXXXXXXXXXLEQHIQQGGRRRPVHGLRATGCNSLARLHTVTKQLVTAFARVLAGSLPRPHHREDLTPNMNPVAPAVCEFLSESLREGFALGLDRTEGSRAVYGPWQAPPSFTSEEH-------LEGNACAN-----------LLVRMERRGPPLRRLLEACSYIFSSALEMAAGP 446
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BLAST of mRNA_D-mesarthrocarpus_Contig10160.1.1 vs. uniprot
Match: A0A7R9U5Z9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U5Z9_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 3.100e-5
Identity = 65/241 (26.97%), Postives = 107/241 (44.40%), Query Frame = 1 
Query:   22 VTRYHTAHGWISEHVRGSGRQPLVEVVAVGLRGEGENWPEGLTQDCDKALQTPSRRRHVLG------------MRHAGSKALA--------RTHVCMKQLMTSFSRVLLGQYPRPSHREEGVHPLSVHAYAISSFIGEALLSALCDGVGESGRVGGGRLPPEAHCMHLGGVLELALCALFDERKGVLNTLLLSQMKNKGTPLRLL------LDACVF---------VLKAALDMAGGPKRL 639
            V RY    GWIS     S  +P+VEVVAV    +  +  E    D  + ++   + RH LG            MR   ++++A        + H+ +K L+ + +R+ +    R  +     H +++H++A+S F+  AL  A      ES         P A  +  G VL+LA   L D+++ ++N+++L +M  +G   RLL      LDA +            +A L  A GP RL
Sbjct:  487 VLRYRVGSGWISATRPFSHPEPIVEVVAVDGALQSADAAEHSVADLIREVKE-LKLRHALGVGKATKKTDFVRMRSFKTRSVAEVGILCCQKLHLAVKNLVATLARMFILP-SRGGYHHTSRHDITLHSWAMSDFLANALNQA-----SESANRAASASLPWA-LVQRGLVLDLATVILHDDKRRMVNSVVLYRMHQQGMLARLLRTVFATLDAFLERDEASLADRARQAVLRQAEGPLRL 719
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10160.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2U2_ECTSI8.210e-3338.53UBA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7R9U5Z9_9STRA3.100e-526.97Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10160contigD-mesarthrocarpus_Contig10160:327..3187 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G2U2
PFAMsUBA
Model size658
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons5
Evalue1.35e-33
EggNOG OGs2D4WP@1|root,2SWJ7@2759|Eukaryota
Ec32 ortholog descriptionUBA-like
Ec32 orthologEc-16_001500.1
DescriptionUbiquitin associated domain
Cds size657
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789159.8159025-CDS-D-mesarthrocarpus_Contig10160:326..4431680789159.8159025-CDS-D-mesarthrocarpus_Contig10160:326..443Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10160 327..443 +
1680789159.8269763-CDS-D-mesarthrocarpus_Contig10160:984..11251680789159.8269763-CDS-D-mesarthrocarpus_Contig10160:984..1125Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10160 985..1125 +
1680789159.8378782-CDS-D-mesarthrocarpus_Contig10160:2135..23041680789159.8378782-CDS-D-mesarthrocarpus_Contig10160:2135..2304Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10160 2136..2304 +
1680789159.8495321-CDS-D-mesarthrocarpus_Contig10160:2603..27071680789159.8495321-CDS-D-mesarthrocarpus_Contig10160:2603..2707Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10160 2604..2707 +
1680789159.8581681-CDS-D-mesarthrocarpus_Contig10160:3060..31861680789159.8581681-CDS-D-mesarthrocarpus_Contig10160:3060..3186Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10160 3061..3186 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10160.1.1prot_D-mesarthrocarpus_Contig10160.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10160 327..3186 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10160.1.1

>prot_D-mesarthrocarpus_Contig10160.1.1 ID=prot_D-mesarthrocarpus_Contig10160.1.1|Name=mRNA_D-mesarthrocarpus_Contig10160.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=219bp
RAGSVHGVTRYHTAHGWISEHVRGSGRQPLVEVVAVGLRGEGENWPEGLT
QDCDKALQTPSRRRHVLGMRHAGSKALARTHVCMKQLMTSFSRVLLGQYP
RPSHREEGVHPLSVHAYAISSFIGEALLSALCDGVGESGRVGGGRLPPEA
HCMHLGGVLELALCALFDERKGVLNTLLLSQMKNKGTPLRLLLDACVFVL
KAALDMAGGPKRLGPEHGA
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mRNA from alignment at D-mesarthrocarpus_Contig10160:327..3187+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10160.1.1 ID=mRNA_D-mesarthrocarpus_Contig10160.1.1|Name=mRNA_D-mesarthrocarpus_Contig10160.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2861bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10160:327..3187+ (Discosporangium mesarthrocarpum MT17_79)
AGGGCGGGCAGTGTGCATGGAGTGACACGGTACCATACGGCCCATGGCTG
GATATCAGAACATGTTCGTGGGAGTGGCCGGCAGCCCCTGGTGGAGGTGG
TGGCTGTGGGTTTGCGGGTGAGAGAACCAACCCCCCCTTGGAAGGGCAGG
TGTTTCGTTTGGTTTTTGTTTTGTGTGTATTGTTTTAAAAGTATGTTGTT
CATGTCGTTGGTTTTTTGTTATTGAGATGGCTGTGTATGTCAGAGTGCAA
TAAATGGCATGTTTATCTAAGCGTAGTACACACAGTGTGCTGCCACATTC
TTTGTCTGCTTGCCTGATTCAATCCTTCTGCTGTGCTCGTCACGGGGTGG
TGTGTCATTCCTTTGATTTTGTGGTTGTTGTTGTTGTTGTTGTTGTTGTT
GTTGTTGTTGTTGTTGTTGTTGTTGTTGGTGGTGTTGTTGGTGTTGTTGG
TGTTGGTGCTGCTGTTTCATAAGGATGCTGTATTCCTCTCTCTTTCTCTC
TCTCTCTCTCGCCCCCCTAACCCTAACCCTATTCCTAACCCTAGTTCCGG
CTTCATTTTTTTTTTGGTTTTGTAACCGATTCCTCACCCACTTGTTTTTT
TTCTTTTTTTTTGTGTGGATTGATGGAACGACTGAATAAATGAATGAAAT
GGTCATAGGGGGAGGGCGAGAACTGGCCCGAGGGATTGACTCAGGACTGT
GACAAGGCCCTCCAGACACCCAGTCGCCGCCGACATGTATTGGGCATGCG
CCACGCAGGGTCCAAGGCGCTTGCCCGGACTCATGTGTGCATGAAGCAGG
TGAGCAAAAAAAGAAGGGAAAAGGAGGAGGAGGAAGAGGAGGAGGGGAAG
AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAGAAGAAGGAGAA
GAAGGAGAAGAAGCCTCTCTAGGGCCTGCTTGAATTAGGGTCCCTTTTTT
TGTGTGCGCGATGTCCAATAGAAAACGAACGTTAGCCAAGTGGACCGACC
AGCCAGCTCCTCTCTCTCTCCGTTTTTTTTTGAGGCCTCTTCACGTAACT
GTTAGTAACTGTTCTGAGTGACTCTTCCCCCCCCCGGCGCTCACGGTAGT
TTTTTGTTTTCTTTTTTTTTTCTCAAGGCCACCGCAGACACGAGAGTCGA
GGGTTACGGTCTCCAGCTCTCCGTTTTAAGGGGGGGTTCAAGAGTGCGAT
TGGTTTGCTTGCTTAGATTTGCAGCGATGGGGGTTTCAATGTTACTTGTT
TTTCAGTGTTTCGAACTCAGGTGTGCAAGGTGCGGTGACTGGATTTTTTC
TGAATCTTGTGTGTTGAGTCAGGGAGAGTGTTGTGGGGAACCGCTCCAAG
GTATGTGCAACATTTTTATTTTTGTTTTTTACCAGTACTGTTGGTAACAG
GGAATCTTGAAATGGCCTTGTGTACTGCGAGGACATTGCAGCTTCTCCTC
CCTCCCCCCCTCCCCTCCCTTCCCCTTACCTCGCCTCACATTTTTGATGT
TGTCTTGTGTTTTTCTGTTCTGTTCTGTTCTATTCTTTTCTGTTCTGTTT
TGTTTTGGTATGTCCTGCCACAGTTTGGTTTGGTTTTGGTTTGGTTTTGA
TTTGGTTTCTGGTTTTGTTTGGGCCTCTCAAATTGTGCGGCTTTATCCCT
CTTTGCTCTTATTTGTCTTGTTTGTTCCGCTGCTGCTGTCGGCTTTGTCA
CTCCCAGCTATCCCCAACCCTGAACCCTAGCCCATTGACCTTAAACCCTA
ACCTATCAACCCTAAATCCGAACCGCTAACCCTACCCTAACCCCCATTGC
TTGTGGCAGCTCATGACGTCCTTCTCCAGGGTCCTGCTGGGGCAGTACCC
ACGTCCCTCACACAGGGAAGAAGGTGTTCACCCCCTCAGCGTGCACGCCT
ATGCCATATCCTCCTTCATCGGCGAGGCATTGCTGTCCGCCCTCTGTGAT
GGTGTTGGGGAGAGCGGCCGCGTCGGGGGTGAGAGAGCAGGAGAGGGTTA
GGGTTAGGGTTAGGGTTAGGGTCAGGGTTAGGGTCAGGGTTACAGGGAGA
GTGGCTGTGTGGGTAGTGAAAGAGAGAGAAAGGGTGTGTGTGAAACTTGG
GGTCGGTGTTAGGTTAGTGCTAGGGTTCCGTCTAAGGGGGGAGCAGGTGT
GTGTGTGTGGGGTGATCTACCCCGATTGAAGTACTATCGGTTGTCGAAAT
CACCTTGTTGCTGTTAGACTTCCCCCCCCTGATGCTTCACCCTCAGTGAC
TGACCTCTGTGTTCTGCTCTCTCTCAGGCGGCCGTCTTCCTCCGGAGGCC
CATTGCATGCATCTGGGGGGGGTGCTGGAGCTGGCGCTGTGCGCCCTGTT
TGATGAGAGGAAGGGTGTCCTCAACACACTTGTATGTCCCCCCCCCCAGA
GTTTTTTTTCCCATGCATTGGACGTTGTTGTACGGGAGGGACACCAAGAT
CCATTATATTCAGGCCAGGCCCCTTATGCCCCTCCCCTGCCCCCCCCCTC
CCCAGACTTTCTACTCTCCCACTTTGAATGTACCCTATCAATATGTCCTA
ACCTCAATGCCAAGCCTAACCCTAAACCTAAGTACTTCTCGCGTTACAAT
TGCCTGTAGTGTCGGACTAAACATGGAGCTGTGTTGAAACCCACCCTCCA
CCACCATCATTTTTTGTCTTTCCTGATCCTTATTTTGACTCTTCCACGCC
CACACTCCCACACTCCCACCCTCTGTCCCCCCAGCTGCTGTCGCAGATGA
AAAACAAGGGCACCCCTCTGAGGCTTCTACTTGATGCCTGTGTGTTTGTA
CTCAAGGCGGCTCTGGACATGGCGGGGGGGCCCAAGCGACTGGGCCCCGA
GCACGGGGCAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10160:327..3187+

>mRNA_D-mesarthrocarpus_Contig10160.1.1 ID=mRNA_D-mesarthrocarpus_Contig10160.1.1|Name=mRNA_D-mesarthrocarpus_Contig10160.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=657bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10160:327..3187+ (Discosporangium mesarthrocarpum MT17_79)
AGGGCGGGCAGTGTGCATGGAGTGACACGGTACCATACGGCCCATGGCTG
GATATCAGAACATGTTCGTGGGAGTGGCCGGCAGCCCCTGGTGGAGGTGG
TGGCTGTGGGTTTGCGGGGGGAGGGCGAGAACTGGCCCGAGGGATTGACT
CAGGACTGTGACAAGGCCCTCCAGACACCCAGTCGCCGCCGACATGTATT
GGGCATGCGCCACGCAGGGTCCAAGGCGCTTGCCCGGACTCATGTGTGCA
TGAAGCAGCTCATGACGTCCTTCTCCAGGGTCCTGCTGGGGCAGTACCCA
CGTCCCTCACACAGGGAAGAAGGTGTTCACCCCCTCAGCGTGCACGCCTA
TGCCATATCCTCCTTCATCGGCGAGGCATTGCTGTCCGCCCTCTGTGATG
GTGTTGGGGAGAGCGGCCGCGTCGGGGGCGGCCGTCTTCCTCCGGAGGCC
CATTGCATGCATCTGGGGGGGGTGCTGGAGCTGGCGCTGTGCGCCCTGTT
TGATGAGAGGAAGGGTGTCCTCAACACACTTCTGCTGTCGCAGATGAAAA
ACAAGGGCACCCCTCTGAGGCTTCTACTTGATGCCTGTGTGTTTGTACTC
AAGGCGGCTCTGGACATGGCGGGGGGGCCCAAGCGACTGGGCCCCGAGCA
CGGGGCA
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