mRNA_D-mesarthrocarpus_Contig1016.7.3 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig1016.7.3
Unique NamemRNA_D-mesarthrocarpus_Contig1016.7.3
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig1016.7.3 vs. uniprot
Match: UPI0019BFC838 (Bifunctional ornithine acetyltransferase/N-acetylglutamate synthase n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=UPI0019BFC838)

HSP 1 Score: 60.1 bits (144), Expect = 8.920e-7
Identity = 30/50 (60.00%), Postives = 34/50 (68.00%), Query Frame = 2 
Query:  782 FPSEEAYMEHLAGQAALPQGFSVGTEGFEFSPLEVPGRSTMNITAIALDE 931
            FPS +A+   LA QAALPQGF VGT  FEF+P E P  S M +T IALD 
Sbjct:    8 FPSRDAHRAWLAEQAALPQGFRVGTTRFEFTPKEAPKPSKMTLTLIALDR 57
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1016.7.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI0019BFC8388.920e-760.00Bifunctional ornithine acetyltransferase/N-acetylg... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig1016contigD-mesarthrocarpus_Contig1016:13450..16502 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G2H9
Preferred nameECM42
PFAMsArgJ
Model size1110
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00064
KEGG koko:K00620
KEGG ReactionR00259,R02282
KEGG Pathwayko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230
KEGG ModuleM00028
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004042,GO:0004358,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006536,GO:0006591,GO:0006592,GO:0006807,GO:0008080,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0019752,GO:0031974,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0070013,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
Exons6
Evalue2.59e-06
EggNOG OGsCOG1364@1|root,KOG2786@2759|Eukaryota
EC2.3.1.1,2.3.1.35
Descriptionglutamate N-acetyltransferase activity
Cds size462
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig1016.7.3prot_D-mesarthrocarpus_Contig1016.7.3Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig1016 13738..15970 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789159.69246-UTR-D-mesarthrocarpus_Contig1016:13449..135311680789159.69246-UTR-D-mesarthrocarpus_Contig1016:13449..13531Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig1016 13450..13531 -
1680789159.7171695-UTR-D-mesarthrocarpus_Contig1016:13703..137371680789159.7171695-UTR-D-mesarthrocarpus_Contig1016:13703..13737Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig1016 13704..13737 -
1680789159.785461-UTR-D-mesarthrocarpus_Contig1016:15970..165021680789159.785461-UTR-D-mesarthrocarpus_Contig1016:15970..16502Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig1016 15971..16502 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789159.728874-CDS-D-mesarthrocarpus_Contig1016:13737..138001680789159.728874-CDS-D-mesarthrocarpus_Contig1016:13737..13800Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1016 13738..13800 -
1680789159.7435815-CDS-D-mesarthrocarpus_Contig1016:14193..143721680789159.7435815-CDS-D-mesarthrocarpus_Contig1016:14193..14372Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1016 14194..14372 -
1680789159.7531447-CDS-D-mesarthrocarpus_Contig1016:14891..149831680789159.7531447-CDS-D-mesarthrocarpus_Contig1016:14891..14983Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1016 14892..14983 -
1680789159.7642913-CDS-D-mesarthrocarpus_Contig1016:15486..155611680789159.7642913-CDS-D-mesarthrocarpus_Contig1016:15486..15561Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1016 15487..15561 -
1680789159.7740984-CDS-D-mesarthrocarpus_Contig1016:15917..159701680789159.7740984-CDS-D-mesarthrocarpus_Contig1016:15917..15970Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1016 15918..15970 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig1016.7.3

>prot_D-mesarthrocarpus_Contig1016.7.3 ID=prot_D-mesarthrocarpus_Contig1016.7.3|Name=mRNA_D-mesarthrocarpus_Contig1016.7.3|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=154bp
MSVLTGTSGIRAFLTFLGCGYNLGLLNVGLHLSMASAFIRPSLSFIGAED
WKASVIVGRKRNRPSSTRISMMEDTPLETHGLEFPSEEAYMEHLAGQAAL
PQGFSVGTEGFEFSPLEVPGRSTMNITAIALDELHTASILLLYCNYTATV
LLL*
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mRNA from alignment at D-mesarthrocarpus_Contig1016:13450..16502-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig1016.7.3 ID=mRNA_D-mesarthrocarpus_Contig1016.7.3|Name=mRNA_D-mesarthrocarpus_Contig1016.7.3|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=3053bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1016:13450..16502- (Discosporangium mesarthrocarpum MT17_79)
ACAAGACTGTCGAATTGTCCAAAACGAACATACTCCCCTGAAGTCTGACA
GTCTCACCTGTCTCGTGGTGTTTTATTCCATTTGTCACTTCCCCTTTTTC
CTTTGGTACAAAATTCAGTACCCCTGGGGACAGGCAGCCCATCGAAAGAC
AGCTGGGTTTTTACAGCAAACCCCTTCTTGAATGAACGCCTTTTCGTTGT
TCCAAAAACCCTACAGGATTTGGCCCAAACGAACAGTTCTGGGCGATTCC
TGTTGGCTGTGCCCGCCCCTCCTCGTCTTCACCCCTTCCTTCTGGCCCAC
ATAATCCCTGACGTCGCAGCACAGGTGCATCGAGTAGCGACCAGCGCGAA
CAGAGCTTGTGTCGCCAAGAAAAACTCCTCACTACGAGGGCGAGCTGCGG
TCGCAAGCAAAAGGGAGTGCAGTGCTCGCTCTTTCGTACCAGTTCCCTGC
AGCTGAGGGACGCTTGGTGAGGTTGACCCCAACCACAGGTCAGAAACCCA
AGGAAATTTGGATCGAGGAAAGGAGGACGGATATGTCCGTCCTCACAGGT
ACCTCGGGGATCCGAGCGTTCTTGACATTTCTTGGGTGAGCAGGCATACT
GTAGGTTGGCCTCTGGATTTGTGGTATAGACGGATGCTTTTGAAGTATGG
TCTATGGTCGCAGTGCTAAAGGCGGGTTTAGGGCTTCAAAAGATTAGGCA
AGAAATCCCCCCCGCTTTCCTCGGGACTGGCCTTTCCATCAAGGAGAACA
AAGGGGAGGTGGCCTTGTGCTGAAACCACCACGCCCGACAGAAAATATAA
CCTCCCCAGCCCTCCCTGGGCTTGGTAGTATTGCACGCTGTCTGGCATCA
ACTCGATTTAAAGACGTGGTGGTTTCAGCCAATTGCTGACCGCTGATCAT
AGCTTCTACAACAGAGACCATGCCTTTTCGTCCTCCCTCAGATGCGGGTA
CAACCTTGGCCTTCTAAACGTAGGGCTTCATCTGTCCATGGCATCAGCCT
TCATCCGTCCATCACTGTGAGGATCGCATGTGGAAGGACTTCCTATTGCA
GCTGTCATCTGAAGCTTCTCGTAGCTCCAGAGTGGTCGCGCCCTTGTCAG
GCTGGGTTACTCGCAAGTTGATGGGGGGGAAGCCGACACCACCCGGCCCC
TGCTCTGGGCCGCCACACCACGAAGCATGAGTGCACTGCTATGCCCCACG
AGACAAAAGATAGACAAGGCCTGCCTCACCGTTGTTAGTTTGTAGGGTCA
CAAGGATCGGTACAGAATGGAGGCCCTCTTGCGACGCCGACTCAGCTCCG
TGTGTATTTGTACGTGCGTTTTGTGTCAACTAATGATGAGGGTGCTGTAC
AACAATATAGTGGTATAGCTCGTAGTACATACACCTGCAAGCCCTGGAAC
AAGGTGCTCCTTCTTGAACGACAGGGTCTGGCAGGGGCCGGTCGTTCCGT
TCCCCAACCAGCTCACCCCCCCTCTGCTGCGCTTGCCCTCTCGCCCGGGG
CCGACCAAAAAAAGAACAGGTCATTTATTGGTGCTGAGGACTGGAAAGCC
AGTGTCATTGTGGGGAGGAAACGGAACCGGCCCTCGTCCACCAGGATATC
AATGATGGAAGGTGTGTGTTTTTTTTGGTTGTGCAAGAGCAAGCATGTGG
CGCTGTGGCATTACAGCCCCCTCCTCCATTCTTTGCTCTTGTTCGCGTTT
TGGGACACCCCCCCTCCTCCCATTCCTCCTCCTCTTCACTGAGCTTGTCA
AGCACCTGAATGCATATTGCTTGGTCGAAGTTCAACACACTGAACTGTAA
CACCAAGTATGGTGGAGTGCCTGATGGAATCGACCCGTGGTTGTTATCCG
CGGCTTGTTTCTTCTAGTTTTTGTATCTGCTCTGTTCAGCTCTGCCCTGC
TTTGCCCTGCCCTGGCCTGCCCTGCCCTGCTATGCTCTGCTATGCTCTGC
TATGCTCTGCTATTTCTTTTTTCTTTCTCTGAACAAAATTACATGGCTTT
ACCCTAACCCTCTCTCCCCGCCATACTCCACACATGTGCTTCTCAGCCTC
TCTCTTGACACACACATTCTGTATACAAGTATGCATAACCAATAGTCTCT
TGCCCGCCTGTTGGTACTGCGTACGCAAAGACACCCCCCTGGAGACACAC
GGGCTAGAGTTCCCCTCTGAAGAGGCATACATGGAGCACCTGGCAGGGCA
GGCAGCACTGCCTCAGGGCTTCAGCGTTGGCACAGAAGGGTTTGAGTTCT
CTCCCCTCGAGGTGCCTGGGCGGAGCACCATGAACATCACTGCCATTGCC
CTGGATGAGGTGAGGGGGTGAGGGGGCGAGGGGGTGTGGGGCCGGAGGGT
GTGGGGGGGGTTAGCGTTACGGTTAGGATTCGGGAGAAGACTGGGCGCAA
ACCAAGCAAAAAAAGAGAACCACAAGGAAAAAAACTAAGCAGTCGTCAAA
CGCCTGTCCACCGAACGAGAGGAAAAAACTACACCCTAACCCTAACCCTA
AACCAAACCCTAACCCTAACCCTAACCCCAACCCTAACCCTAGCCCTAGC
CCGAACCACAGATTGACCTTTTCCAAGCTACCCTGGACATCCCGCTTAAT
CTAGTTTACCACCACAGTAAAACAAATCACACAACTTTCCACATGCTTCT
GCCATTACTGCAACTGTACACTTGTACTCCTCCTACTAATGTGCTGCTGC
AGCTCCATACTGCTTCTATCCTGCTGCTATACTGCAACTATACTGCTACT
GTACTGCTACTATAAGTGGTCTTACCACCACCACTACCGGCATTTTCAGG
TCAGTTGGAAATCCTTCAGAGCGTGAATGGAGTAAGGAAAAGGGAGGGGG
GTAACAAAAAAAGATAGAAAAAAAAGTTACACCACAAGGGTCTCTCTCGC
ACTCCCCCCCCTCCAGCCTCACACCGACCCCTCCCTTCTCCCCCAAACTC
CCTGCCCCACTACCTCTGTAGCCCTCAGACCAATGGGGTGCCGTCTTCAC
CAGGAACCTGTTCCCAGGGGCACCCGTCCTCGTGGGGCGGCAGCGCCTGG
GTG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1016:13450..16502-

>mRNA_D-mesarthrocarpus_Contig1016.7.3 ID=mRNA_D-mesarthrocarpus_Contig1016.7.3|Name=mRNA_D-mesarthrocarpus_Contig1016.7.3|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=462bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1016:13450..16502- (Discosporangium mesarthrocarpum MT17_79)
ATGTCCGTCCTCACAGGTACCTCGGGGATCCGAGCGTTCTTGACATTTCT
TGGATGCGGGTACAACCTTGGCCTTCTAAACGTAGGGCTTCATCTGTCCA
TGGCATCAGCCTTCATCCGTCCATCACTGTCATTTATTGGTGCTGAGGAC
TGGAAAGCCAGTGTCATTGTGGGGAGGAAACGGAACCGGCCCTCGTCCAC
CAGGATATCAATGATGGAAGACACCCCCCTGGAGACACACGGGCTAGAGT
TCCCCTCTGAAGAGGCATACATGGAGCACCTGGCAGGGCAGGCAGCACTG
CCTCAGGGCTTCAGCGTTGGCACAGAAGGGTTTGAGTTCTCTCCCCTCGA
GGTGCCTGGGCGGAGCACCATGAACATCACTGCCATTGCCCTGGATGAGC
TCCATACTGCTTCTATCCTGCTGCTATACTGCAACTATACTGCTACTGTA
CTGCTACTATAA
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