mRNA_D-mesarthrocarpus_Contig1016.10.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig1016.10.1
Unique NamemRNA_D-mesarthrocarpus_Contig1016.10.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1016.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig1016contigD-mesarthrocarpus_Contig1016:23212..23777 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size566
Hectar predicted targeting categoryother localisation
Exons1
Cds size384
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789159.3874657-UTR-D-mesarthrocarpus_Contig1016:23211..233511680789159.3874657-UTR-D-mesarthrocarpus_Contig1016:23211..23351Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig1016 23212..23351 -
1680789159.4141457-UTR-D-mesarthrocarpus_Contig1016:23735..237771680789159.4141457-UTR-D-mesarthrocarpus_Contig1016:23735..23777Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig1016 23736..23777 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789159.4029875-CDS-D-mesarthrocarpus_Contig1016:23351..237351680789159.4029875-CDS-D-mesarthrocarpus_Contig1016:23351..23735Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1016 23352..23735 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig1016.10.1prot_D-mesarthrocarpus_Contig1016.10.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig1016 23352..23735 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig1016.10.1

>prot_D-mesarthrocarpus_Contig1016.10.1 ID=prot_D-mesarthrocarpus_Contig1016.10.1|Name=mRNA_D-mesarthrocarpus_Contig1016.10.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=128bp
MGTALELRGPDLFFLFGHGTRYCKKKKLRPVPECVYYCSDTCVDNCSETC
VDNCSRMHTLECYARPGCQTVLGRCRRKCSRPWFFSETSNAQCVDGHGKR
QLWLTLSPLRSSVRVHTRTWGVCCGCF*
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mRNA from alignment at D-mesarthrocarpus_Contig1016:23212..23777-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig1016.10.1 ID=mRNA_D-mesarthrocarpus_Contig1016.10.1|Name=mRNA_D-mesarthrocarpus_Contig1016.10.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=566bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1016:23212..23777- (Discosporangium mesarthrocarpum MT17_79)
CGACAAGGAGACAACAAAGAACACCTTATCCATCGTTGAAAAATGGGTAC
AGCTCTGGAGTTACGGGGGCCGGATCTTTTTTTTCTTTTCGGGCATGGTA
CTCGGTATTGCAAAAAAAAAAAATTGCGCCCCGTTCCCGAGTGCGTTTAC
TATTGTTCTGACACGTGTGTGGACAATTGTTCTGAAACGTGTGTGGATAA
TTGTTCTCGAATGCATACGCTCGAGTGCTACGCGCGTCCAGGGTGTCAAA
CGGTGCTGGGGCGATGTCGCCGGAAATGTTCCAGGCCGTGGTTTTTCTCT
GAGACTTCGAATGCACAGTGTGTCGACGGCCACGGGAAAAGGCAGCTTTG
GTTGACCTTGAGCCCGTTGCGGTCCTCTGTTAGGGTGCATACCCGTACCT
GGGGTGTCTGCTGTGGCTGCTTCTGACCTTTGGAGAATGTGTTCATATCA
TTGTTCTTTCTGACCCTATCCCTCTCTCTGTCTCTCTCTCTCTCTCTCCC
CCCCCCCATGAGCAGCAGTCAATCCGCTGCCCTTTGCGTGACTGTCTGTC
TACCCCATAGGGAGCT
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1016:23212..23777-

>mRNA_D-mesarthrocarpus_Contig1016.10.1 ID=mRNA_D-mesarthrocarpus_Contig1016.10.1|Name=mRNA_D-mesarthrocarpus_Contig1016.10.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=384bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1016:23212..23777- (Discosporangium mesarthrocarpum MT17_79)
ATGGGTACAGCTCTGGAGTTACGGGGGCCGGATCTTTTTTTTCTTTTCGG
GCATGGTACTCGGTATTGCAAAAAAAAAAAATTGCGCCCCGTTCCCGAGT
GCGTTTACTATTGTTCTGACACGTGTGTGGACAATTGTTCTGAAACGTGT
GTGGATAATTGTTCTCGAATGCATACGCTCGAGTGCTACGCGCGTCCAGG
GTGTCAAACGGTGCTGGGGCGATGTCGCCGGAAATGTTCCAGGCCGTGGT
TTTTCTCTGAGACTTCGAATGCACAGTGTGTCGACGGCCACGGGAAAAGG
CAGCTTTGGTTGACCTTGAGCCCGTTGCGGTCCTCTGTTAGGGTGCATAC
CCGTACCTGGGGTGTCTGCTGTGGCTGCTTCTGA
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