mRNA_D-mesarthrocarpus_Contig10159.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10159.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10159.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10159.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10159contigD-mesarthrocarpus_Contig10159:2443..4098 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size804
Hectar predicted targeting categoryother localisation
Exons3
Cds size801
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789159.3287563-CDS-D-mesarthrocarpus_Contig10159:2442..25951680789159.3287563-CDS-D-mesarthrocarpus_Contig10159:2442..2595Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10159 2443..2595 +
1680789159.3384128-CDS-D-mesarthrocarpus_Contig10159:3084..31861680789159.3384128-CDS-D-mesarthrocarpus_Contig10159:3084..3186Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10159 3085..3186 +
1680789159.3532512-CDS-D-mesarthrocarpus_Contig10159:3551..40971680789159.3532512-CDS-D-mesarthrocarpus_Contig10159:3551..4097Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10159 3552..4097 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10159.1.1prot_D-mesarthrocarpus_Contig10159.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10159 2443..4097 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10159.1.1

>prot_D-mesarthrocarpus_Contig10159.1.1 ID=prot_D-mesarthrocarpus_Contig10159.1.1|Name=mRNA_D-mesarthrocarpus_Contig10159.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=267bp
GGGRSRGEGGGENGAKNRAPQLGPVVGVPSQLKVTYMRLVYSRHSFLAAL
EESFGVVIPAVPRTLKEAELSFLRKDQLDKPPHTEREGQGKLGGDTPGSH
LRRLDNLPRFVTRLRTCGTYGSVVLVPPPPPGGGGGEGDKPSLGKELELK
PVIEVITCNDSIASLVRRPLGELEGKSLCSLARLRMDHPGATGGAGWRRS
RASGVQHEAATVGLEGEVQGKDIKSGPGDAGTGAGTTSAPELGEEPPGGQ
QGQRRGHGERAKRVSRE
back to top

mRNA from alignment at D-mesarthrocarpus_Contig10159:2443..4098+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10159.1.1 ID=mRNA_D-mesarthrocarpus_Contig10159.1.1|Name=mRNA_D-mesarthrocarpus_Contig10159.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1656bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10159:2443..4098+ (Discosporangium mesarthrocarpum MT17_79)
GGTGGGGGCAGGAGCAGAGGTGAGGGCGGGGGTGAGAATGGGGCCAAGAA
CAGGGCTCCACAGCTGGGTCCAGTGGTGGGGGTCCCATCGCAGCTCAAGG
TGACATATATGAGGCTCGTCTACAGCCGCCACAGCTTCCTGGCAGCATTA
GAGGTAAGAGGGGCAAGGCTTGTGTGACAAAAAGGACAATGACATGATAT
TCAGTAGTGCAGGGGTGCAGCGGTACAGTGGTTTACGGTACTGCAAGAAG
GCTGGGATTAGGGTTAGGGGTTGAGTGTGGCATCTGCTGCACATCCATGA
TCAAGGGTGAGTACAAACGGGGAAAGGAGGTGCTCCTTTTTTGGTATTTT
TTATTAGGCAGGTTCGTTTTGTTTGCTCTTGACTTAGCATGTGTTGTTGC
GAGCACGCCCTGCCTTCTTTTTTTTTGGTTTGTACATGAAACCTTTTTGG
TGATTCGCTGATGAAAAGCCGCTGCCAATAACACCACCGCCACCACTGGC
AGGCTGGCTGGCTGGCCAAAAAAGGGACTACACCTCCTCAGCTTTATGGC
CCAGTTCTTATCAACGAGGAGCATGTCCCCCACCCTAACCCTAACCCTTA
CCCTTACCCTAACTTCAACCCTTTCCGCATGCGGTGCCAAAGGAAAGCTT
CGGAGTGGTTATCCCAGCAGTTCCCCGAACCCTGAAGGAAGCAGAGCTGT
CCTTCCTTCGAAAGGACCAGCTTGATAAGCCCCCTCATACTGAGGTAGGA
GTTTTTCGGGAGGGAGGGTGTGGGGTGGGGTTATCTATGCGATCTTTCCT
TGGGGAGTCTTGTTGGCGAGGTCCGGGGAGGAGGAGAAAAAGTGAAATGT
TTTGTCGCATTGACTTGCGTTGTTTTATTGATGAACTTCACCAGATGCTC
CTGTCTTGGAGTCACTCTGAGAGACCTGAGCAGGGGGGGAGGACCTCTCC
CTCAAACCCCCTAACCCTCAACCACTTCCCCCTACCCACCCTGGAAAATA
TATATATATTGTTTCTTTCCTCCACACTAGTGAAGCTTGTCTCTCGATCT
TTCTTTCTCTCTGGTCCTTGATATCTTCGTGTGTCTGTCTCTCTTTGCGT
CTGTGCCAGCGGGAGGGACAAGGGAAGCTAGGAGGAGACACACCTGGCTC
CCACTTGAGGAGGTTGGACAACCTCCCCCGCTTTGTGACCCGCCTCCGGA
CATGTGGGACGTATGGAAGTGTCGTCCTCGTGCCACCACCTCCACCCGGA
GGGGGAGGAGGGGAAGGGGACAAACCCAGCCTGGGGAAGGAGCTGGAGTT
GAAGCCCGTGATCGAGGTGATCACTTGCAACGATTCCATCGCCTCCCTGG
TGCGGCGGCCTCTGGGAGAACTAGAGGGAAAATCCCTTTGCTCTCTCGCA
CGCCTCCGTATGGATCACCCTGGGGCCACGGGAGGGGCAGGGTGGAGGAG
GTCCCGGGCATCAGGAGTGCAGCATGAGGCGGCGACCGTCGGTTTGGAAG
GGGAGGTCCAGGGAAAAGATATAAAATCAGGACCGGGGGATGCTGGGACT
GGGGCTGGGACCACAAGTGCTCCAGAGCTGGGAGAGGAACCTCCTGGTGG
GCAGCAGGGGCAGAGGCGGGGGCATGGGGAGAGGGCAAAACGTGTGTCAA
GGGAGT
back to top

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10159:2443..4098+

>mRNA_D-mesarthrocarpus_Contig10159.1.1 ID=mRNA_D-mesarthrocarpus_Contig10159.1.1|Name=mRNA_D-mesarthrocarpus_Contig10159.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=801bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10159:2443..4098+ (Discosporangium mesarthrocarpum MT17_79)
GGTGGGGGCAGGAGCAGAGGTGAGGGCGGGGGTGAGAATGGGGCCAAGAA
CAGGGCTCCACAGCTGGGTCCAGTGGTGGGGGTCCCATCGCAGCTCAAGG
TGACATATATGAGGCTCGTCTACAGCCGCCACAGCTTCCTGGCAGCATTA
GAGGAAAGCTTCGGAGTGGTTATCCCAGCAGTTCCCCGAACCCTGAAGGA
AGCAGAGCTGTCCTTCCTTCGAAAGGACCAGCTTGATAAGCCCCCTCATA
CTGAGCGGGAGGGACAAGGGAAGCTAGGAGGAGACACACCTGGCTCCCAC
TTGAGGAGGTTGGACAACCTCCCCCGCTTTGTGACCCGCCTCCGGACATG
TGGGACGTATGGAAGTGTCGTCCTCGTGCCACCACCTCCACCCGGAGGGG
GAGGAGGGGAAGGGGACAAACCCAGCCTGGGGAAGGAGCTGGAGTTGAAG
CCCGTGATCGAGGTGATCACTTGCAACGATTCCATCGCCTCCCTGGTGCG
GCGGCCTCTGGGAGAACTAGAGGGAAAATCCCTTTGCTCTCTCGCACGCC
TCCGTATGGATCACCCTGGGGCCACGGGAGGGGCAGGGTGGAGGAGGTCC
CGGGCATCAGGAGTGCAGCATGAGGCGGCGACCGTCGGTTTGGAAGGGGA
GGTCCAGGGAAAAGATATAAAATCAGGACCGGGGGATGCTGGGACTGGGG
CTGGGACCACAAGTGCTCCAGAGCTGGGAGAGGAACCTCCTGGTGGGCAG
CAGGGGCAGAGGCGGGGGCATGGGGAGAGGGCAAAACGTGTGTCAAGGGA
G
back to top